Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017040

Physical Location & Seq

Genomic Coordinates Reverse (-)

19418032 .. 19421849

Gene Structure 3818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGGGAAGAGCTCCATATTGTGACAAAGCTAATGTCAAAAAAGGGCAATGGTCTCTTGAGGAAGATGAAGCTCTCAAGACTTACCTTGAGACTCATGGAACTGGTGGCAATTGGATTCATCTGCCACAAAAAGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

46

Amino Acids

5.13

Weight (kDa)

6.7

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 45	9.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49330
pyrus_communis	pycom15g04920
rosa_chinensis	RchiOBHm_Chr3g0473591
rosa_laevigata	RLG00000024002
rosa_multiflora	Rmu_ssc0000322.1_g000028
rosa_roxburghii	Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780
rosa_samantha	Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	4 cut(s)	11, 29, 71, 134
AluI	AGCT	4 cut(s)	11, 29, 71, 134
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	57, 83
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	57, 83
BpuEI	CTTGAG	3 cut(s)	59, 77, 107
BsaI	GGTCTC	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	13
BsmAI	GTCTC	2 cut(s)	57, 83
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	57, 83
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	4 cut(s)	11, 29, 71, 134
CviKI_1	RGCY	4 cut(s)	11, 29, 71, 134
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	1 cut(s)	98
FaiI	YATR	2 cut(s)	16, 96
FatI	CATG	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	2 cut(s)	91, 115
Hpy188III	TCNNGA	2 cut(s)	56, 76
Hsp92II	CATG	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	2 cut(s)	87, 120
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	18, 74
MfeI	CAATTG	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	1 cut(s)	52
MunI	CAATTG	1 cut(s)	109
NlaIII	CATG	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	5 cut(s)	13, 31, 73, 87, 136
SgeI	CNNG	5 cut(s)	68, 88, 98, 107, 114
SmlI	CTYRAG	3 cut(s)	56, 74, 86
SmoI	CTYRAG	3 cut(s)	56, 74, 86
Sse9I	AATT	1 cut(s)	109
SstI	GAGCTC	1 cut(s)	13
TasI	AATT	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	81, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.