Rroxscaffold_3G00255700

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017040
Physical Location & Seq
Forward (+)
50083372 .. 50087397
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255700.1

Sequence Viewer

Length: 402 bp
ATGATGCAATTGAGGGAAGAAAGGCTAGGGACAGCTAGCCCTGAGGTGGATGATGAGAAAAGAAAGTTGGCTGACTTATTGAAAGAAACAGGCAGATTTCGGAACAGAAAAGCCAGATCACTAGAGAACCTCCTTGAGGTCAACTCTCATGGTATAAACAATGATCGAATTAAGGTCGTAACGGTGAGTCCCCTTGTACCTCATCAATTGTTGCTGCACAATCCGCCTCCTCGCACGCATGTCCACCGCAGCCTTCGCAGTTTCGAGATCTCCTCCGGTTCAGCCAGCTTCTCCGCTACGGCCACGGCTCCGGCTGCCACGTTGGACAGCTCCTCCGAGGTTTCCCGGGCCGACTCGTCCTCGTCAACAGTTCGGATCCAGGTCGTAGGTCAAATGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

133

Amino Acids

14.6

Weight (kDa)

9.8

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49330
pyrus_communis pycom15g04920
rosa_chinensis RchiOBHm_Chr3g0473591
rosa_laevigata RLG00000024002
rosa_multiflora Rmu_ssc0000322.1_g000028
rosa_roxburghii Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780
rosa_samantha Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 224, 247, 294
AclWI GGATC 2 cut(s) 370, 383
AcoI YGGCCR 1 cut(s) 300
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 46, 136
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 1 cut(s) 378
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 3 cut(s) 35, 288, 330
AluI AGCT 3 cut(s) 35, 288, 330
AlwI GGATC 2 cut(s) 370, 383
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 2 cut(s) 300, 348
ApeKI GCWGC 3 cut(s) 214, 249, 314
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 2 cut(s) 346, 347
AsuHPI GGTGA 1 cut(s) 196
AsuNHI GCTAGC 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 345
AxyI CCTNAGG 1 cut(s) 42
BamHI GGATCC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 201, 261, 301
BceAI ACGGC 2 cut(s) 315, 321
BciT130I CCWGG 1 cut(s) 380
BcnI CCSGG 2 cut(s) 346, 347
BfaI CTAG 3 cut(s) 26, 36, 122
BglII AGATCT 1 cut(s) 267
BisI GCNGC 3 cut(s) 215, 250, 315
BlsI GCNGC 3 cut(s) 216, 251, 316
Bme1390I CCNGG 3 cut(s) 346, 347, 380
BmeT110I CYCGRG 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 2 cut(s) 309, 377
BmrFI CCNGG 3 cut(s) 346, 347, 380
BmtI GCTAGC 1 cut(s) 39
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 257, 289
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 346, 347
BsaJI CCNNGG 3 cut(s) 303, 336, 345
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 136
Bse21I CCTNAGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 303, 336, 345
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 46, 136
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 3 cut(s) 219, 262, 322
BseXI GCAGC 3 cut(s) 201, 261, 301
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 2 cut(s) 302, 350
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 3 cut(s) 276, 311, 346
BslFI GGGAC 2 cut(s) 43, 174
BslI CCNNNNNNNGG 2 cut(s) 46, 136
BsmFI GGGAC 2 cut(s) 43, 174
BsnI GGCC 2 cut(s) 302, 350
BsoBI CYCGRG 1 cut(s) 345
Bsp143I GATC 4 cut(s) 116, 163, 267, 375
BspACI CCGC 3 cut(s) 224, 247, 294
BspANI GGCC 2 cut(s) 302, 350
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 309, 377
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 2 cut(s) 370, 383
BssECI CCNNGG 3 cut(s) 303, 336, 345
BssMI GATC 4 cut(s) 116, 163, 267, 375
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 2 cut(s) 184, 370
BstC8I GCNNGC 3 cut(s) 37, 236, 286
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 4 cut(s) 119, 166, 270, 378
BstMBI GATC 4 cut(s) 116, 163, 267, 375
BstMWI GCNNNNNNNGC 3 cut(s) 223, 255, 314
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 344, 345, 378
BstV1I GCAGC 3 cut(s) 201, 261, 301
BstX2I RGATCY 2 cut(s) 267, 375
BstYI RGATCY 2 cut(s) 267, 375
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 2 cut(s) 302, 350
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 37, 236, 286
Cfr13I GGNCC 1 cut(s) 348
Cfr9I CCCGGG 1 cut(s) 345
Csp6I GTAC 1 cut(s) 197
CviAII CATG 2 cut(s) 149, 239
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 1 cut(s) 42
DpnI GATC 4 cut(s) 118, 165, 269, 377
DpnII GATC 4 cut(s) 116, 163, 267, 375
EaeI YGGCCR 1 cut(s) 300
EciI GGCGGA 1 cut(s) 213
Eco81I CCTNAGG 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 378
FaeI CATG 2 cut(s) 152, 242
FaiI YATR 3 cut(s) 150, 155, 240
FaqI GGGAC 2 cut(s) 43, 174
FatI CATG 2 cut(s) 148, 238
Fnu4HI GCNGC 3 cut(s) 215, 250, 315
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 215, 250, 315
FspBI CTAG 3 cut(s) 26, 36, 122
GluI GCNGC 3 cut(s) 215, 250, 315
HaeIII GGCC 2 cut(s) 302, 350
HapII CCGG 3 cut(s) 276, 311, 346
Hin1II CATG 2 cut(s) 152, 242
HincII GTYRAC 2 cut(s) 142, 366
HindII GTYRAC 2 cut(s) 142, 366
HinfI GANTC 2 cut(s) 187, 353
HpaII CCGG 3 cut(s) 276, 311, 346
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 142, 244, 366
Hpy188I TCNGA 3 cut(s) 102, 337, 375
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 3 cut(s) 142, 244, 366
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 2 cut(s) 184, 370
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 7, 217
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 255, 314
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 2 cut(s) 152, 242
Kzo9I GATC 4 cut(s) 116, 163, 267, 375
LmnI GCTCC 2 cut(s) 313, 335
LpnPI CCDG 9 cut(s) 54, 75, 127, 289, 298, 324, 359, 365, 392
Lsp1109I GCAGC 3 cut(s) 201, 261, 301
MaeI CTAG 3 cut(s) 26, 36, 122
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 178
MalI GATC 4 cut(s) 118, 165, 269, 377
MboI GATC 4 cut(s) 116, 163, 267, 375
MboII GAAGA 1 cut(s) 29
MfeI CAATTG 2 cut(s) 8, 206
MflI RGATCY 2 cut(s) 267, 375
MluCI AATT 3 cut(s) 8, 168, 206
MlyI GAGTC 2 cut(s) 196, 347
MmeI TCCRAC 1 cut(s) 303
MseI TTAA 1 cut(s) 171
MspI CCGG 3 cut(s) 276, 311, 346
MspR9I CCNGG 3 cut(s) 346, 347, 380
MunI CAATTG 2 cut(s) 8, 206
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 223, 255, 314
NciI CCSGG 2 cut(s) 346, 347
NdeII GATC 4 cut(s) 116, 163, 267, 375
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 152, 242
NlaIV GGNNCC 2 cut(s) 309, 377
NspI RCATGY 1 cut(s) 242
PkrI GCNGC 3 cut(s) 216, 251, 316
PleI GAGTC 2 cut(s) 195, 347
PpsI GAGTC 2 cut(s) 195, 347
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 309, 377
PspPI GGNCC 1 cut(s) 348
PsuI RGATCY 2 cut(s) 267, 375
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 3 cut(s) 215, 250, 315
Sau3AI GATC 4 cut(s) 116, 163, 267, 375
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 2 cut(s) 196, 347
ScrFI CCNGG 3 cut(s) 346, 347, 380
SmaI CCCGGG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 8, 168, 206
SsiI CCGC 3 cut(s) 224, 247, 294
SspMI CTAG 3 cut(s) 26, 36, 122
StyD4I CCNGG 3 cut(s) 344, 345, 378
TaaI ACNGT 2 cut(s) 184, 370
TaiI ACGT 1 cut(s) 323
TaqI TCGA 2 cut(s) 166, 264
TasI AATT 3 cut(s) 8, 168, 206
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 3 cut(s) 214, 249, 314
TspMI CCCGGG 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 134
XceI RCATGY 1 cut(s) 242
XmaI CCCGGG 1 cut(s) 345
XspI CTAG 3 cut(s) 26, 36, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.