AT5G49970

Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
20329103 .. 20333172
4070 bp
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UTR
Exon/CDS
Intron
AT5G49970.2

Sequence Viewer

Length: 1593 bp
ATGAGGAATGTGATACGCAGAGTCACAACAATGACATTCACCTTCCTTCTCCAATCACCACCACTCCCAATTTCTCCATCTCCTCCTCAATTCTCTCTTTCCTCTTCTCCTTTATCAAAAACGCAGCGATTCATCACTCCAAGCCAGGGCTCTCGTCTACGGACTTTGTGTACCAAAGTCATCATACCAAACATGCAAGATTCAGGATCACCACCACTCTCTTATCTTACTCAGCGAGAAGCCGCTGAGATTGATGAGACCTTGATGGGTCCTCTTGGTTTCTCCATTGATCAGCTCATGGAATTGGCTGGTCTTAGTGTGGCAGCTTCAATTGCTGAGGTTTATAAACCGGAAGAATATAGCCGGGTTCTAGCTATCTGTGGTCCTGGGAACAATGGTGGTGATGGTTTGGTGGCGGCGAGGCATTTGCACCACTTTGGATATAAACCGTTTATTTGTTATCCCAAACGTACAGCCAAGCCACTTTATACTGGACTGGTCACTCAGTTGGATTCACTCTCAGTCCCTTTTGTTTCCGTTGAGGATCTGCCGGATGACTTGTCAAAGGACTTTGATGTTATTGTAGATGCAATGTTTGGGTTTTCATTCCATGGAGCTCCCAGGCCTCCTTTTGATGACCTCATCCGGCGATTAGTATCGTTACAGAACTATGAGCAGACTCTTCAAAAACACCCAGTCATTGTCTCTGTGGATATTCCCTCTGGTTGGCACGTTGAAGAAGGAGACCATGAAGATGGAGGAATTAAGCCTGATATGTTGGTATCTTTGACTGCCCCAAAATTATGTGCAAAGAGATTCCGTGGCCCTCATCACTTTTTAGGTGGGAGATTTGTACCACCTTCTGTTGCAGAAAAGTATAAGCTGGAGCTCCCTAGTTACCCAGGGACATCTATGTGTGTTAGAATTGGTAAACCTCCCAAAGTTGACATATCTGCTATGAGAGTGAACTATGTCTCTCCAGAATTGCTTGAGGAGCAGGTTGAAACTGATCCTACGGTACAGTTTCGTAAATGGTTTGATGAGGCAGTTGCTGCTGGATTGAGAGAAACAAATGCTATGGCTTTGTCTACAGCGAACAAGGACAAAAAACCCTCATCAAGAATGGTTTTACTAAAAGGATTTGATGAGAATGGATTTGTCTGGTTCACCAACTACGAAAGTAAAAAGGGTTCTGATTTATCAGAAAATCCTAGTGCAGCACTTCTTTTTTACTGGGAAATTTTGAACCGTCAGGTAAGAATTGAAGGACCAGTGGAAAGAATACCTGAGTCAGAATCCGAGAATTACTTTCATAGTCGTCCTAGAGGAAGTCAGATTGGAGCTATTGTTAGCAAGCAGAGTTCTGTTGTACCTGGCAGGCATGTTCTATACGACGAATATGAAGAACTGACAAAACAATATTCGGATGGAAGTGTGATACCAAAGCCGAAAAACTGGGGAGGATTCAGACTTAAACCAAACCTTTTCGAGTTTTGGCAGGGACAGCCATCTCGTTTACATGACAGGCTGCAGTATTCTCTGCAAGACGTAAACGGGAATCCTGCGTGGAAAATTCATAGATTGGCCCCATGA

Protein Analysis

530

Amino Acids

59.38

Weight (kDa)

6.91

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjeF_N PF03853 97 - 259 1.5e-30 YjeF-related protein N-terminus
Pyridox_oxase_2 PF12766 331 - 415 3e-06 Pyridoxamine 5'-phosphate oxidase
PNPOx_N PF01243 335 - 460 4.5e-29 Pyridoxamine 5'-phosphate oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 988
AccI GTMKAC 2 cut(s) 157, 1088
AciI CCGC 2 cut(s) 243, 416
AclWI GGATC 3 cut(s) 214, 552, 1004
AcsI RAATTY 2 cut(s) 1239, 1572
AfaI GTAC 5 cut(s) 172, 472, 855, 1020, 1371
AfiI CCNNNNNNNGG 2 cut(s) 146, 726
AgsI TTSAA 6 cut(s) 330, 686, 737, 1004, 1246, 1265
AjnI CCWGG 5 cut(s) 144, 385, 620, 901, 1372
AluBI AGCT 7 cut(s) 295, 326, 374, 617, 883, 889, 1343
AluI AGCT 7 cut(s) 295, 326, 374, 617, 883, 889, 1343
Alw21I GWGCWC 2 cut(s) 619, 891
Alw26I GTCTC 4 cut(s) 251, 709, 738, 979
AlwI GGATC 3 cut(s) 214, 552, 1004
AlwNI CAGNNNCTG 1 cut(s) 1052
AoxI GGCC 3 cut(s) 623, 823, 1584
ApeKI GCWGC 5 cut(s) 124, 323, 1052, 1217, 1528
ApoI RAATTY 2 cut(s) 1239, 1572
AspS9I GGNCC 5 cut(s) 269, 383, 824, 1268, 1585
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 5 cut(s) 31, 48, 201, 413, 1159
AvaII GGWCC 3 cut(s) 269, 383, 1268
BanII GRGCYC 3 cut(s) 152, 619, 891
Bbv12I GWGCWC 2 cut(s) 619, 891
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 5 cut(s) 136, 335, 1039, 1229, 1515
BccI CCATC 6 cut(s) 85, 259, 398, 749, 1421, 1516
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 5 cut(s) 146, 387, 622, 903, 1374
BclI TGATCA 1 cut(s) 289
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 4 cut(s) 251, 709, 738, 979
BfaI CTAG 4 cut(s) 371, 894, 1212, 1323
BfmI CTRYAG 2 cut(s) 1089, 1529
BfuAI ACCTGC 1 cut(s) 988
BisI GCNGC 7 cut(s) 125, 243, 324, 417, 1053, 1218, 1529
BlsI GCNGC 7 cut(s) 126, 244, 325, 418, 1054, 1219, 1530
Bme1390I CCNGG 6 cut(s) 146, 365, 387, 622, 903, 1374
Bme18I GGWCC 3 cut(s) 269, 383, 1268
BmgT120I GGNCC 5 cut(s) 269, 383, 824, 1268, 1585
BmiI GGNNCC 2 cut(s) 270, 1587
BmrFI CCNGG 6 cut(s) 146, 365, 387, 622, 903, 1374
BmrI ACTGGG 3 cut(s) 689, 1243, 1465
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 3 cut(s) 689, 1243, 1465
BpmI CTGGAG 2 cut(s) 905, 963
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 1010
BpuMI CCSGG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 655
BsaI GGTCTC 2 cut(s) 251, 738
BsaJI CCNNGG 7 cut(s) 145, 386, 610, 620, 820, 901, 902
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 1332, 1362
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 726
Bse1I ACTGG 6 cut(s) 496, 501, 695, 1238, 1271, 1460
Bse3DI GCAATG 1 cut(s) 597
Bse8I GATNNNNATC 1 cut(s) 655
BseBI CCWGG 5 cut(s) 146, 387, 622, 903, 1374
BseDI CCNNGG 7 cut(s) 145, 386, 610, 620, 820, 901, 902
BseGI GGATG 3 cut(s) 559, 642, 1432
BseJI GATNNNNATC 1 cut(s) 655
BseLI CCNNNNNNNGG 2 cut(s) 146, 726
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 6 cut(s) 237, 245, 327, 518, 534, 1278
BseNI ACTGG 6 cut(s) 496, 501, 695, 1238, 1271, 1460
BseRI GAGGAG 3 cut(s) 72, 75, 1007
BseXI GCAGC 5 cut(s) 136, 335, 1039, 1229, 1515
BsgI GTGCAG 1 cut(s) 1236
BshFI GGCC 3 cut(s) 625, 825, 1586
BsiHKAI GWGCWC 2 cut(s) 619, 891
BsiSI CCGG 4 cut(s) 350, 364, 551, 646
BslFI GGGAC 3 cut(s) 509, 919, 1515
BslI CCNNNNNNNGG 2 cut(s) 146, 726
BsmAI GTCTC 4 cut(s) 251, 709, 738, 979
BsmFI GGGAC 3 cut(s) 509, 919, 1515
BsnI GGCC 3 cut(s) 625, 825, 1586
Bso31I GGTCTC 2 cut(s) 251, 738
Bsp1286I GDGCHC 3 cut(s) 152, 619, 891
Bsp143I GATC 4 cut(s) 206, 289, 544, 1009
Bsp19I CCATGG 1 cut(s) 610
BspACI CCGC 2 cut(s) 243, 416
BspANI GGCC 3 cut(s) 625, 825, 1586
BspCNI CTCAG 6 cut(s) 238, 244, 328, 517, 533, 1279
BspLI GGNNCC 2 cut(s) 270, 1587
BspMAI CTGCAG 1 cut(s) 1533
BspMI ACCTGC 1 cut(s) 988
BspPI GGATC 3 cut(s) 214, 552, 1004
BspTNI GGTCTC 2 cut(s) 251, 738
BsrDI GCAATG 1 cut(s) 597
BsrI ACTGG 6 cut(s) 496, 501, 695, 1238, 1271, 1460
BssECI CCNNGG 7 cut(s) 145, 386, 610, 620, 820, 901, 902
BssMI GATC 4 cut(s) 206, 289, 544, 1009
BssT1I CCWWGG 1 cut(s) 610
Bst2UI CCWGG 5 cut(s) 146, 387, 622, 903, 1374
Bst4CI ACNGT 4 cut(s) 450, 1018, 1023, 1250
Bst6I CTCTTC 2 cut(s) 109, 687
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstC8I GCNNGC 2 cut(s) 1355, 1379
BstDEI CTNAG 7 cut(s) 231, 246, 314, 336, 504, 520, 1287
BstDSI CCRYGG 2 cut(s) 610, 820
BstF5I GGATG 3 cut(s) 559, 642, 1432
BstKTI GATC 4 cut(s) 209, 292, 547, 1012
BstMAI GTCTC 4 cut(s) 251, 709, 738, 979
BstMBI GATC 4 cut(s) 206, 289, 544, 1009
BstMWI GCNNNNNNNGC 4 cut(s) 332, 994, 1052, 1504
BstNI CCWGG 5 cut(s) 146, 387, 622, 903, 1374
BstNSI RCATGY 2 cut(s) 196, 1385
BstSCI CCNGG 6 cut(s) 144, 363, 385, 620, 901, 1372
BstSFI CTRYAG 2 cut(s) 1089, 1529
BstV1I GCAGC 5 cut(s) 136, 335, 1039, 1229, 1515
BstX2I RGATCY 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 755
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 3 cut(s) 625, 825, 1586
BtgI CCRYGG 2 cut(s) 610, 820
BtsCI GGATG 3 cut(s) 559, 642, 1432
BtsIMutI CAGTG 1 cut(s) 1278
BveI ACCTGC 1 cut(s) 988
Cac8I GCNNGC 2 cut(s) 1355, 1379
CaiI CAGNNNCTG 1 cut(s) 1052
Cfr13I GGNCC 5 cut(s) 269, 383, 824, 1268, 1585
Csp6I GTAC 5 cut(s) 171, 471, 854, 1019, 1370
CviAII CATG 7 cut(s) 193, 298, 611, 749, 1382, 1520, 1590
CviQI GTAC 5 cut(s) 171, 471, 854, 1019, 1370
DdeI CTNAG 7 cut(s) 231, 246, 314, 336, 504, 520, 1287
DpnI GATC 4 cut(s) 208, 291, 546, 1011
DpnII GATC 4 cut(s) 206, 289, 544, 1009
Eam1104I CTCTTC 2 cut(s) 109, 687
EarI CTCTTC 2 cut(s) 109, 687
Ecl136II GAGCTC 2 cut(s) 617, 889
Eco130I CCWWGG 1 cut(s) 610
Eco147I AGGCCT 1 cut(s) 625
Eco24I GRGCYC 3 cut(s) 152, 619, 891
Eco31I GGTCTC 2 cut(s) 251, 738
Eco47I GGWCC 3 cut(s) 269, 383, 1268
Eco53kI GAGCTC 2 cut(s) 617, 889
EcoICRI GAGCTC 2 cut(s) 617, 889
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 5 cut(s) 144, 385, 620, 901, 1372
EcoT14I CCWWGG 1 cut(s) 610
EcoT38I GRGCYC 3 cut(s) 152, 619, 891
ErhI CCWWGG 1 cut(s) 610
FaeI CATG 7 cut(s) 196, 301, 614, 752, 1385, 1523, 1593
FaqI GGGAC 3 cut(s) 509, 919, 1515
FatI CATG 7 cut(s) 192, 297, 610, 748, 1381, 1519, 1589
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 2 cut(s) 157, 1088
Fnu4HI GCNGC 7 cut(s) 125, 243, 324, 417, 1053, 1218, 1529
FokI GGATG 3 cut(s) 566, 629, 1439
FriOI GRGCYC 3 cut(s) 152, 619, 891
Fsp4HI GCNGC 7 cut(s) 125, 243, 324, 417, 1053, 1218, 1529
FspBI CTAG 4 cut(s) 371, 894, 1212, 1323
GluI GCNGC 7 cut(s) 125, 243, 324, 417, 1053, 1218, 1529
GsuI CTGGAG 2 cut(s) 905, 963
HaeIII GGCC 3 cut(s) 625, 825, 1586
HapII CCGG 4 cut(s) 350, 364, 551, 646
Hin1II CATG 7 cut(s) 196, 301, 614, 752, 1385, 1523, 1593
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HpaII CCGG 4 cut(s) 350, 364, 551, 646
HphI GGTGA 5 cut(s) 31, 48, 201, 413, 1159
Hpy166II GTNNAC 9 cut(s) 158, 171, 932, 946, 967, 1089, 1167, 1517, 1552
Hpy188I TCNGA 7 cut(s) 1195, 1204, 1294, 1300, 1335, 1426, 1469
Hpy188III TCNNGA 3 cut(s) 204, 980, 1119
Hpy8I GTNNAC 9 cut(s) 158, 171, 932, 946, 967, 1089, 1167, 1517, 1552
Hpy99I CGWCG 1 cut(s) 1397
HpyAV CCTTC 5 cut(s) 52, 56, 734, 870, 1259
HpyCH4III ACNGT 4 cut(s) 450, 1018, 1023, 1250
HpyCH4IV ACGT 3 cut(s) 469, 732, 1548
HpyCH4V TGCA 8 cut(s) 196, 430, 590, 809, 869, 1217, 1531, 1543
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 994, 1052, 1504
HpyF3I CTNAG 7 cut(s) 231, 246, 314, 336, 504, 520, 1287
HpySE526I ACGT 3 cut(s) 469, 732, 1548
Hsp92II CATG 7 cut(s) 196, 301, 614, 752, 1385, 1523, 1593
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 4 cut(s) 206, 289, 544, 1009
LmnI GCTCC 6 cut(s) 614, 622, 886, 894, 994, 1340
Lsp1109I GCAGC 5 cut(s) 136, 335, 1039, 1229, 1515
LweI GCATC 1 cut(s) 577
MaeI CTAG 4 cut(s) 371, 894, 1212, 1323
MaeII ACGT 3 cut(s) 469, 732, 1548
MaeIII GTNAC 4 cut(s) 22, 499, 660, 896
MalI GATC 4 cut(s) 208, 291, 546, 1011
MboI GATC 4 cut(s) 206, 289, 544, 1009
MboII GAAGA 6 cut(s) 96, 365, 674, 749, 764, 1415
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 3 cut(s) 152, 619, 891
MlyI GAGTC 3 cut(s) 30, 673, 1298
MmeI TCCRAC 1 cut(s) 489
MseI TTAA 2 cut(s) 765, 1473
MslI CAYNNNNRTG 3 cut(s) 29, 753, 913
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 4 cut(s) 350, 364, 551, 646
MspR9I CCNGG 6 cut(s) 146, 365, 387, 622, 903, 1374
MunI CAATTG 1 cut(s) 330
MvaI CCWGG 5 cut(s) 146, 387, 622, 903, 1374
MwoI GCNNNNNNNGC 4 cut(s) 332, 994, 1052, 1504
NciI CCSGG 1 cut(s) 365
NcoI CCATGG 1 cut(s) 610
NdeII GATC 4 cut(s) 206, 289, 544, 1009
NlaIII CATG 7 cut(s) 196, 301, 614, 752, 1385, 1523, 1593
NlaIV GGNNCC 2 cut(s) 270, 1587
NmuCI GTSAC 2 cut(s) 22, 499
NspI RCATGY 2 cut(s) 196, 1385
PasI CCCWGGG 1 cut(s) 902
PceI AGGCCT 1 cut(s) 625
PfeI GAWTC 7 cut(s) 129, 200, 512, 816, 1295, 1464, 1558
PkrI GCNGC 7 cut(s) 126, 244, 325, 418, 1054, 1219, 1530
PleI GAGTC 3 cut(s) 29, 673, 1297
PpsI GAGTC 3 cut(s) 29, 673, 1297
PpuMI RGGWCCY 1 cut(s) 269
PsiI TTATAA 1 cut(s) 345
Psp124BI GAGCTC 2 cut(s) 619, 891
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 5 cut(s) 144, 385, 620, 901, 1372
PspGI CCWGG 5 cut(s) 144, 385, 620, 901, 1372
PspN4I GGNNCC 2 cut(s) 270, 1587
PspPI GGNCC 5 cut(s) 269, 383, 824, 1268, 1585
PspPPI RGGWCCY 1 cut(s) 269
PsrI GAACNNNNNNTAC 2 cut(s) 1174, 1206
PstI CTGCAG 1 cut(s) 1533
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 5 cut(s) 172, 472, 855, 1020, 1371
RsaNI GTAC 5 cut(s) 171, 471, 854, 1019, 1370
RseI CAYNNNNRTG 3 cut(s) 29, 753, 913
SacI GAGCTC 2 cut(s) 619, 891
SaqAI TTAA 2 cut(s) 765, 1473
SatI GCNGC 7 cut(s) 125, 243, 324, 417, 1053, 1218, 1529
Sau3AI GATC 4 cut(s) 206, 289, 544, 1009
Sau96I GGNCC 5 cut(s) 269, 383, 824, 1268, 1585
SchI GAGTC 3 cut(s) 30, 673, 1298
ScrFI CCNGG 6 cut(s) 146, 365, 387, 622, 903, 1374
SduI GDGCHC 3 cut(s) 152, 619, 891
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 2 cut(s) 1089, 1529
SinI GGWCC 3 cut(s) 269, 383, 1268
SmiMI CAYNNNNRTG 3 cut(s) 29, 753, 913
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
SseBI AGGCCT 1 cut(s) 625
SsiI CCGC 2 cut(s) 243, 416
SspI AATATT 1 cut(s) 1421
SspMI CTAG 4 cut(s) 371, 894, 1212, 1323
SstI GAGCTC 2 cut(s) 619, 891
StuI AGGCCT 1 cut(s) 625
StyD4I CCNGG 6 cut(s) 144, 363, 385, 620, 901, 1372
StyI CCWWGG 1 cut(s) 610
TaaI ACNGT 4 cut(s) 450, 1018, 1023, 1250
TaiI ACGT 3 cut(s) 472, 735, 1551
TaqI TCGA 1 cut(s) 1488
TauI GCSGC 2 cut(s) 245, 419
TfiI GAWTC 7 cut(s) 129, 200, 512, 816, 1295, 1464, 1558
Tru1I TTAA 2 cut(s) 765, 1473
Tru9I TTAA 2 cut(s) 765, 1473
TscAI CASTG 1 cut(s) 1278
TseFI GTSAC 2 cut(s) 22, 499
TseI GCWGC 5 cut(s) 124, 323, 1052, 1217, 1528
Tsp45I GTSAC 2 cut(s) 22, 499
TspDTI ATGAA 6 cut(s) 121, 594, 765, 1301, 1416, 1565
TspGWI ACGGA 3 cut(s) 175, 526, 809
TspRI CASTG 1 cut(s) 1278
VpaK11BI GGWCC 3 cut(s) 269, 383, 1268
XapI RAATTY 2 cut(s) 1239, 1572
XceI RCATGY 2 cut(s) 196, 1385
XmiI GTMKAC 2 cut(s) 157, 1088
XspI CTAG 4 cut(s) 371, 894, 1212, 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.