Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471315.1

Orthogroup ID

OG0003643

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1722

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471315.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaatgagaacatgctagtttataaaccgagcgagtataatcgtgtcctcgcgatttgtggtcctggaaacaatggtggtgatggtcttgtggctgctcgtcacctgcatcactttgggtataagccgtttgtttgttatccaaagcgtactgctaagcctctttatactggtctggtcactcaactggaatcactgtcagtccctttcatatctgtggaagatctgcctttggacttgtcaaaggactttgacattgttgtagatgcaatgtttgggttttcattccgtggtgatccaaggcccccttttgataatctaatccaaaagctgaattatatcaataattatgatcaaacacaccaaaagtcctctgctgttgtctccatagatatcccatctgggtggcaggttgaaggagatggtggtccagaaggcattaagcctgatatgttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004733 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006081 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016638 GO:0016641 GO:0016853 GO:0016854 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0031974 GO:0031981 GO:0034356 GO:0034641 GO:0034654 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046184 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0052856 GO:0052857 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

PNP_phzG_C Putative_PNPOx YjeF_N

Protein Analysis

152

Amino Acids

16.87

Weight (kDa)

5.23

Isoelectric Point (pI)

24.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49970 AT5G49970
fragaria_vesca	FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940
malus_domestica	MD08G1191800.v1.1 MD15G1380600.v1.1
prunus_persica	Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1
pyrus_communis	pycom08g16530 pycom15g34090
rosa_chinensis	RchiOBHm_Chr7g0237681
rosa_laevigata	RLG00000000977
rosa_multiflora	Rmu_co8471315.1_g000001 Rmu_sc0007826.1_g000003
rosa_roxburghii	Rroxscaffold_3G00223890
rosa_rugosa	Rorug07G0306200 Rorug07G0306300 Rorug07G0306400 Rorug07G0306500
rosa_samantha	Rh7AG462900 Rh7BG433000 Rh7CG479900 Rh7DG448900
rosa_wichuraiana	Rw7G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AarI	CACCTGC	1 cut(s)	114
Acc36I	ACCTGC	2 cut(s)	114, 400
AccII	CGCG	1 cut(s)	53
AclWI	GGATC	1 cut(s)	290
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	62, 303, 428
AsuHPI	GGTGA	3 cut(s)	92, 95, 305
AvaII	GGWCC	2 cut(s)	62, 428
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	77, 406, 416
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	17
BfuAI	ACCTGC	2 cut(s)	114, 400
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	1 cut(s)	96
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	2 cut(s)	62, 428
BmgT120I	GGNCC	3 cut(s)	62, 303, 428
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	118, 256
Bpu1102I	GCTNAGC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	289, 299
Bse1I	ACTGG	2 cut(s)	175, 192
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	289, 299
BseMI	GCAATG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	175, 192
BseXI	GCAGC	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	223, 295, 352
Bsp1720I	GCTNAGC	1 cut(s)	156
Bsp68I	TCGCGA	1 cut(s)	53
BspANI	GGCC	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	305
BspMI	ACCTGC	2 cut(s)	114, 400
BspPI	GGATC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	175, 192
BssECI	CCNNGG	2 cut(s)	289, 299
BssMI	GATC	3 cut(s)	223, 295, 352
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	226, 298, 355
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	3 cut(s)	223, 295, 352
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	304
BtgI	CCRYGG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	194
BtuMI	TCGCGA	1 cut(s)	53
BveI	ACCTGC	2 cut(s)	114, 400
Cfr13I	GGNCC	3 cut(s)	62, 303, 428
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	95, 127, 160, 304, 331, 445
CviKI_1	RGCY	6 cut(s)	95, 127, 160, 304, 331, 445
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	225, 297, 354
DpnII	GATC	3 cut(s)	223, 295, 352
Eco130I	CCWWGG	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	2 cut(s)	62, 428
EcoO109I	RGGNCCY	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	16
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	3 cut(s)	92, 95, 305
Hpy188III	TCNNGA	2 cut(s)	52, 431
HpyAV	CCTTC	2 cut(s)	410, 428
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	109, 269
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	223, 295, 352
LpnPI	CCDG	9 cut(s)	51, 78, 119, 156, 161, 173, 387, 395, 444
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	118, 256
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	101, 178
MalI	GATC	3 cut(s)	225, 297, 354
MboI	GATC	3 cut(s)	223, 295, 352
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	2 cut(s)	334, 346
MnlI	CCTC	3 cut(s)	59, 171, 382
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	2 cut(s)	215, 403
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	53
NdeII	GATC	3 cut(s)	223, 295, 352
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	101, 178
NruI	TCGCGA	1 cut(s)	53
NspI	RCATGY	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	97
PsiI	TTATAA	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	3 cut(s)	62, 303, 428
PsuI	RGATCY	1 cut(s)	223
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	2 cut(s)	215, 403
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	3 cut(s)	223, 295, 352
Sau96I	GGNCC	3 cut(s)	62, 303, 428
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	3 cut(s)	108, 333, 414
SfaNI	GCATC	2 cut(s)	118, 256
SinI	GGWCC	2 cut(s)	62, 428
SmiMI	CAYNNNNRTG	2 cut(s)	215, 403
Sse9I	AATT	2 cut(s)	334, 346
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	198
TasI	AATT	2 cut(s)	334, 346
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	101, 178
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	2 cut(s)	101, 178
TspDTI	ATGAA	3 cut(s)	17, 199, 273
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	62, 428
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.