Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003643

Physical Location & Seq

Genomic Coordinates Forward (+)

30683924 .. 30684385

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACACAAGATGTTGCTCCACGCATTGGATATCAGAAACCTGCTTTGATCGAGTCTAAGTTCTTCCCTGCCCTGCAGGGAGAAGCAGGAAAAATGTCGGCTAGTGATCCAAATTCTGCCATATACATAACTGATTCCGCAAAGGATATTGTGAGAAAGATAAACAAGTTTGCATTTTCAAGGGGACGAGATTCAATAGAGGAACACAGACATAAGGGAGCAAGGCTCGACGTAGACATACCATACAAATACCTTCAGTTTTTCCTAGAGGATGACAGTGAACTCAATTACATAAAGGAGGCGTATGGTGCGGGACGCATGTTAACAGGTCAAGTAAAACAGCGGCTTATTGAAGTTTTGACTGAAATGGTAGAAAGACATCGTCGAGCTAGGGCTGCTGTGACTGATGAGATGGTAGATGCATTTATGACAGTGAGGTCTCTACCTAATATGTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004733 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006081 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016638 GO:0016641 GO:0016853 GO:0016854 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0031974 GO:0031981 GO:0034356 GO:0034641 GO:0034654 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046184 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0052856 GO:0052857 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

PNP_phzG_C Putative_PNPOx YjeF_N

Protein Analysis

153

Amino Acids

17.49

Weight (kDa)

7.94

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	1 - 124	5.6e-12	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49970 AT5G49970
fragaria_vesca	FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940
malus_domestica	MD08G1191800.v1.1 MD15G1380600.v1.1
prunus_persica	Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1
pyrus_communis	pycom08g16530 pycom15g34090
rosa_chinensis	RchiOBHm_Chr7g0237681
rosa_laevigata	RLG00000000977
rosa_multiflora	Rmu_co8471315.1_g000001 Rmu_sc0007826.1_g000003
rosa_roxburghii	Rroxscaffold_3G00223890
rosa_rugosa	Rorug07G0306200 Rorug07G0306300 Rorug07G0306400 Rorug07G0306500
rosa_samantha	Rh7AG462900 Rh7BG433000 Rh7CG479900 Rh7DG448900
rosa_wichuraiana	Rw7G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	49
AccB7I	CCANNNNNTGG	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	3 cut(s)	138, 311, 343
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	180, 195, 353, 457
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	3 cut(s)	102, 266, 390
BfmI	CTRYAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	344, 396
BlsI	GCNGC	2 cut(s)	345, 397
BmsI	GCATC	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BsaI	GGTCTC	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	382
BslFI	GGGAC	2 cut(s)	198, 327
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	2 cut(s)	198, 327
Bso31I	GGTCTC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	48, 106
BspACI	CCGC	3 cut(s)	138, 311, 343
BspMAI	CTGCAG	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	444
BssMI	GATC	2 cut(s)	48, 106
Bst4CI	ACNGT	2 cut(s)	278, 433
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	51, 109
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	2 cut(s)	48, 106
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 395
BstNSI	RCATGY	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	283, 438
BveI	ACCTGC	1 cut(s)	49
CseI	GACGC	1 cut(s)	324
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	5 cut(s)	101, 226, 346, 389, 395
CviKI_1	RGCY	5 cut(s)	101, 226, 346, 389, 395
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	50, 108
DpnII	GATC	2 cut(s)	48, 106
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	424
FaeI	CATG	1 cut(s)	322
FaqI	GGGAC	2 cut(s)	198, 327
FatI	CATG	1 cut(s)	318
FauI	CCCGC	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	344, 396
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	344, 396
FspBI	CTAG	3 cut(s)	102, 266, 390
GluI	GCNGC	2 cut(s)	344, 396
HgaI	GACGC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	3 cut(s)	53, 134, 191
HpaI	GTTAAC	1 cut(s)	324
Hpy166II	GTNNAC	3 cut(s)	235, 281, 324
Hpy188I	TCNGA	1 cut(s)	36
Hpy8I	GTNNAC	3 cut(s)	235, 281, 324
Hpy99I	CGWCG	2 cut(s)	233, 387
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	278, 433
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	76, 173, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 395
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	48, 106
LmnI	GCTCC	2 cut(s)	22, 218
LpnPI	CCDG	6 cut(s)	54, 62, 72, 81, 86, 312
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	102, 266, 390
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	50, 108
MboI	GATC	2 cut(s)	48, 106
MboII	GAAGA	1 cut(s)	55
MluCI	AATT	2 cut(s)	112, 286
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	193, 262, 292, 429
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	308, 395
NdeII	GATC	2 cut(s)	48, 106
NlaIII	CATG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	134, 191
PflFI	GACNNNGTC	1 cut(s)	381
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	345, 397
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	78
PsyI	GACNNNGTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	2 cut(s)	344, 396
Sau3AI	GATC	2 cut(s)	48, 106
SbfI	CCTGCAGG	1 cut(s)	78
SchI	GAGTC	1 cut(s)	62
SdaI	CCTGCAGG	1 cut(s)	78
SetI	ASST	7 cut(s)	43, 234, 255, 331, 391, 440, 448
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	74
Sse8387I	CCTGCAGG	1 cut(s)	78
Sse9I	AATT	2 cut(s)	112, 286
SsiI	CCGC	3 cut(s)	138, 311, 343
SspMI	CTAG	3 cut(s)	102, 266, 390
TaaI	ACNGT	2 cut(s)	278, 433
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	51, 228, 385
TasI	AATT	2 cut(s)	112, 286
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	134, 191
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	2 cut(s)	283, 438
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	400
TspRI	CASTG	2 cut(s)	283, 438
Tth111I	GACNNNGTC	1 cut(s)	381
Van91I	CCANNNNNTGG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	3 cut(s)	102, 266, 390
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.