AT5G51220

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006864
Physical Location & Seq
Reverse (-)
20821040 .. 20823411
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51220.2

Sequence Viewer

Length: 846 bp
ATGTTGCCCAGATTAGCTCGAGTCGTCACTCAAACCTCAAAGCTTCGATCTTTGACCACTAATGGATCGATGAAAAATCTCTCCTTTTTCTCCCGATATGGGTACGCGACTGTTGCGCCGGCGGCAGCTGATCCTCCGTCGCAGAAGGATTTCCCCAGTAAATCTCCGATAAACTTGGATAAGATGTTTTGGTCAAAGCCATGTTCATTGGCTCTGCCTAAAGACTCTCCTCTCAGAATTGATGAACCAGACTATGTAGGGATTCGTCGTTTCATACTAAAGATGATGATGTTCTATAGCAAACAGAGCATGTCTATCCGTGGGGCTAACGTGATCTACAAGCGGATCATTGCACAAGTTGATAAACCTGCAATATATGATGTATTCAACTTGGAGAAAACATTCAAAATAACGTATTCGCTGCTTGTCCTTCATATGTGGCTTGTTTTACGCCGCTTGAAGGAAGATGGACAGGAAGGTGTTGACCTTGGTCAATACGTCTATGAGATCTACAATCATGATGTTGAACTCAGGGTATCTAAAGCCGGGGTTAACTTGCTGCTAGCCAAGTGGATGAAGGAGTTGGAGAGAATATTTTATGGAAATGTTGTTGCCTATGATGCTGCGCTACTTCCGGAAGCTAAACCAAATGACCTACAAATCAAATTATGGAGGAACGTATTTTCTGATGATGGAACAACAACACCTGATAACACAGATTTAAAAACAGCACAGGCAATGGCAAGATATGTCCGGAGAGAACTTGGTTCTCTTTCTTTAACAGATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCACCCCTTTGGAGAACAAGCCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

281

Amino Acids

32.11

Weight (kDa)

9.42

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 68 - 212 1.9e-37 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccII CGCG 1 cut(s) 107
AccIII TCCGGA 2 cut(s) 634, 753
AciI CCGC 3 cut(s) 122, 343, 454
AclWI GGATC 3 cut(s) 73, 125, 353
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 99, 460
AgsI TTSAA 4 cut(s) 388, 406, 460, 527
AluBI AGCT 4 cut(s) 17, 43, 128, 641
AluI AGCT 4 cut(s) 17, 43, 128, 641
AlwI GGATC 3 cut(s) 73, 125, 353
Ama87I CYCGRG 1 cut(s) 18
Aor13HI TCCGGA 2 cut(s) 634, 753
ApeKI GCWGC 4 cut(s) 125, 421, 559, 623
Asp700I GAANNNNTTC 2 cut(s) 149, 401
AspLEI GCGC 2 cut(s) 118, 628
AsuC2I CCSGG 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 811
AsuNHI GCTAGC 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 18
BbvI GCAGC 4 cut(s) 137, 408, 546, 610
BccI CCATC 2 cut(s) 461, 686
BcnI CCSGG 1 cut(s) 547
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 376
BglII AGATCT 1 cut(s) 507
BisI GCNGC 6 cut(s) 123, 126, 422, 454, 560, 624
BlsI GCNGC 6 cut(s) 124, 127, 423, 455, 561, 625
Bme1390I CCNGG 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 547
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 610
BmtI GCTAGC 1 cut(s) 566
BmuI ACTGGG 1 cut(s) 150
BoxI GACNNNNGTC 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 547
Bsa29I ATCGAT 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 319, 487, 546
BsaWI WCCGGW 2 cut(s) 634, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 460
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 156
Bse3DI GCAATG 2 cut(s) 348, 744
BseAI TCCGGA 2 cut(s) 634, 753
BseCI ATCGAT 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 319, 487, 546
BseGI GGATG 1 cut(s) 579
BseLI CCNNNNNNNGG 2 cut(s) 99, 460
BseMI GCAATG 2 cut(s) 348, 744
BseMII CTCAG 2 cut(s) 247, 544
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 219
BseXI GCAGC 4 cut(s) 137, 408, 546, 610
Bsh1236I CGCG 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 5 cut(s) 119, 546, 635, 754, 804
BslI CCNNNNNNNGG 2 cut(s) 99, 460
BsoBI CYCGRG 1 cut(s) 18
Bsp13I TCCGGA 2 cut(s) 634, 753
Bsp143I GATC 6 cut(s) 47, 65, 130, 333, 345, 507
BspACI CCGC 3 cut(s) 122, 343, 454
BspCNI CTCAG 2 cut(s) 246, 543
BspDI ATCGAT 1 cut(s) 68
BspEI TCCGGA 2 cut(s) 634, 753
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 376
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 3 cut(s) 73, 125, 353
BsrDI GCAATG 2 cut(s) 348, 744
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 3 cut(s) 319, 487, 546
BssMI GATC 6 cut(s) 47, 65, 130, 333, 345, 507
BssT1I CCWWGG 1 cut(s) 487
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 120, 564
BstDEI CTNAG 2 cut(s) 233, 530
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 1 cut(s) 579
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 2 cut(s) 118, 628
BstKTI GATC 6 cut(s) 50, 68, 133, 336, 348, 510
BstMBI GATC 6 cut(s) 47, 65, 130, 333, 345, 507
BstMWI GCNNNNNNNGC 4 cut(s) 113, 122, 306, 620
BstNSI RCATGY 1 cut(s) 313
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 545
BstSFI CTRYAG 1 cut(s) 295
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 137, 408, 546, 610
BstX2I RGATCY 1 cut(s) 507
BstYI RGATCY 1 cut(s) 507
Bsu15I ATCGAT 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 319
BtsCI GGATG 1 cut(s) 579
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 120, 564
CciI TCATGA 1 cut(s) 517
CfoI GCGC 2 cut(s) 118, 628
Cfr10I RCCGGY 1 cut(s) 118
ClaI ATCGAT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 103
CviAII CATG 3 cut(s) 201, 310, 518
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 233, 530
DpnI GATC 6 cut(s) 49, 67, 132, 335, 347, 509
DpnII GATC 6 cut(s) 47, 65, 130, 333, 345, 507
DraI TTTAAA 1 cut(s) 723
Eco130I CCWWGG 1 cut(s) 487
Eco88I CYCGRG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 3 cut(s) 204, 313, 521
FatI CATG 3 cut(s) 200, 309, 517
FauNDI CATATG 1 cut(s) 435
Fnu4HI GCNGC 6 cut(s) 123, 126, 422, 454, 560, 624
FokI GGATG 1 cut(s) 586
Fsp4HI GCNGC 6 cut(s) 123, 126, 422, 454, 560, 624
FspBI CTAG 1 cut(s) 563
GlaI GCGC 2 cut(s) 117, 627
GluI GCNGC 6 cut(s) 123, 126, 422, 454, 560, 624
HapII CCGG 5 cut(s) 119, 546, 635, 754, 804
HhaI GCGC 2 cut(s) 118, 628
Hin1II CATG 3 cut(s) 204, 313, 521
Hin6I GCGC 2 cut(s) 116, 626
HinP1I GCGC 2 cut(s) 116, 626
HincII GTYRAC 2 cut(s) 484, 553
HindII GTYRAC 2 cut(s) 484, 553
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 4 cut(s) 21, 224, 262, 791
HpaI GTTAAC 1 cut(s) 553
HpaII CCGG 5 cut(s) 119, 546, 635, 754, 804
HphI GGTGA 1 cut(s) 811
Hpy166II GTNNAC 2 cut(s) 484, 553
Hpy188I TCNGA 3 cut(s) 168, 236, 688
Hpy188III TCNNGA 4 cut(s) 93, 518, 635, 754
Hpy8I GTNNAC 2 cut(s) 484, 553
Hpy99I CGWCG 2 cut(s) 142, 270
HpyAV CCTTC 6 cut(s) 139, 440, 454, 470, 571, 826
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 4 cut(s) 330, 413, 498, 678
HpyCH4V TGCA 2 cut(s) 353, 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 122, 306, 620
HpyF3I CTNAG 2 cut(s) 233, 530
HpySE526I ACGT 4 cut(s) 330, 413, 498, 678
Hsp92II CATG 3 cut(s) 204, 313, 521
HspAI GCGC 2 cut(s) 116, 626
Kpn2I TCCGGA 2 cut(s) 634, 753
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
KspAI GTTAAC 1 cut(s) 553
Kzo9I GATC 6 cut(s) 47, 65, 130, 333, 345, 507
Lsp1109I GCAGC 4 cut(s) 137, 408, 546, 610
LweI GCATC 1 cut(s) 610
MaeI CTAG 1 cut(s) 563
MaeII ACGT 4 cut(s) 330, 413, 498, 678
MaeIII GTNAC 1 cut(s) 25
MalI GATC 6 cut(s) 49, 67, 132, 335, 347, 509
MboI GATC 6 cut(s) 47, 65, 130, 333, 345, 507
MboII GAAGA 1 cut(s) 476
MflI RGATCY 1 cut(s) 507
MluCI AATT 3 cut(s) 237, 665, 808
MlyI GAGTC 3 cut(s) 30, 218, 800
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 4 cut(s) 46, 144, 240, 666
MreI CGCCGGCG 1 cut(s) 118
MroI TCCGGA 2 cut(s) 634, 753
MroNI GCCGGC 1 cut(s) 118
MroXI GAANNNNTTC 2 cut(s) 149, 401
MseI TTAA 3 cut(s) 552, 722, 779
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 5 cut(s) 119, 546, 635, 754, 804
MspR9I CCNGG 1 cut(s) 547
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 4 cut(s) 113, 122, 306, 620
NaeI GCCGGC 1 cut(s) 120
NciI CCSGG 1 cut(s) 547
NdeI CATATG 1 cut(s) 435
NdeII GATC 6 cut(s) 47, 65, 130, 333, 345, 507
NgoMIV GCCGGC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 3 cut(s) 204, 313, 521
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 313
PaeR7I CTCGAG 1 cut(s) 18
PagI TCATGA 1 cut(s) 517
PdiI GCCGGC 1 cut(s) 120
PdmI GAANNNNTTC 2 cut(s) 149, 401
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 6 cut(s) 124, 127, 423, 455, 561, 625
PleI GAGTC 3 cut(s) 29, 218, 799
PpsI GAGTC 3 cut(s) 29, 218, 799
PshAI GACNNNNGTC 1 cut(s) 489
PspXI VCTCGAGB 1 cut(s) 18
PsuI RGATCY 1 cut(s) 507
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 552, 722, 779
SatI GCNGC 6 cut(s) 123, 126, 422, 454, 560, 624
Sau3AI GATC 6 cut(s) 47, 65, 130, 333, 345, 507
SchI GAGTC 3 cut(s) 30, 218, 800
ScrFI CCNGG 1 cut(s) 547
SfaNI GCATC 1 cut(s) 610
SfcI CTRYAG 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 18
SgrAI CRCCGGYG 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 3 cut(s) 237, 665, 808
SsiI CCGC 3 cut(s) 122, 343, 454
SspI AATATT 1 cut(s) 594
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 1 cut(s) 545
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 4 cut(s) 333, 416, 501, 681
TaqI TCGA 3 cut(s) 19, 46, 68
TasI AATT 3 cut(s) 237, 665, 808
TauI GCSGC 2 cut(s) 125, 456
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 3 cut(s) 552, 722, 779
Tru9I TTAA 3 cut(s) 552, 722, 779
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 4 cut(s) 125, 421, 559, 623
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 6 cut(s) 86, 195, 258, 262, 422, 590
TspGWI ACGGA 2 cut(s) 126, 308
XceI RCATGY 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 18
XmnI GAANNNNTTC 2 cut(s) 149, 401
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.