Rroxscaffold_4G00284000

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006864
Physical Location & Seq
Reverse (-)
5751600 .. 5754907
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284000.1

Sequence Viewer

Length: 861 bp
ATGCTGCCGAGGTGGAGCAGAGCTCTCACTCAGCTCTCGCGGATGGGCTCGCAGCGTGGCCTGAACCACGGAAACGATTTCTATGCTATTTCGCGCCAAAGCTACGCCAAGGCAGCTGTGGCTCCGGTTATGGCTGATACTCTGGAAAAAGGCCTCCCCACCGAGCCAGTGGTGAATTTGGACAAGCTGTTTTGGTCTAAGCCTTGCTCGTTGGCTTTGCCTCCGGAGTCACCGTTGAGGATTGATGAGCCGGAGTATGAGGGCATTAAGCGTGTGTTTCTTAAGCTGATGCTGTTTTACAGCAAGCAAAGCAAGTCTATTCGAGGGGCGAATGTGGTGTATAAGAGAGTAGTTTCTCAAGTTGATAAACCGGCCATATACGAAGTGTTCAACTTGGAGAAAACTTTTAAGACGACGTATGCTTTGCTTGTACTTCATATGTGGCTTTGCTTACGCCGGTTGAAACAAGAGGGAAAAGAAGGTGTTGAGTTCGGGCAATATGTGTATGAGATTTACAACCATGATGTGGAACTTAGAGTCTCTAAGGCTGGGGTCAACTTGCTACTGAGTAAATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCTGTGCTTCCAGAGGCAAGGCTGGATGATCTGCCAAATGTCATATGGAGGAATGTCTTTTCTGATGACGGTTCATCAAAGCCAGATGAGGCTGCATCACGAACTGCAATGGCAAGATATGTTCGCCGGGAAGTTAGTTGCCTGTCCTTAACAGATAAAGAAGCTATGTTTTCCGGCAATTTCATGTTTACTCCACTAAAAATCGAGAAAGCAAAATTGGAGGGGTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

286

Amino Acids

32.69

Weight (kDa)

9.22

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 129 - 271 3.4e-35 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 2 cut(s) 40, 94
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 175
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 526
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 391, 463
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AluBI AGCT 7 cut(s) 23, 34, 102, 116, 187, 286, 791
AluI AGCT 7 cut(s) 23, 34, 102, 116, 187, 286, 791
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 58, 151, 372
ApeKI GCWGC 5 cut(s) 4, 52, 113, 626, 719
ApoI RAATTY 1 cut(s) 175
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 852
AsuC2I CCSGG 1 cut(s) 755
AsuHPI GGTGA 2 cut(s) 184, 222
AvaII GGWCC 1 cut(s) 852
BanII GRGCYC 2 cut(s) 25, 50
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 4 cut(s) 64, 125, 613, 706
BccI CCATC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BcnI CCSGG 1 cut(s) 755
BcoDI GTCTC 1 cut(s) 544
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 5 cut(s) 5, 53, 114, 627, 720
BlsI GCNGC 5 cut(s) 6, 54, 115, 628, 721
Bme1390I CCNGG 1 cut(s) 755
Bme18I GGWCC 1 cut(s) 852
BmgT120I GGNCC 1 cut(s) 852
BmiI GGNNCC 2 cut(s) 123, 853
BmrFI CCNGG 1 cut(s) 755
BmsI GCATC 3 cut(s) 279, 613, 731
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 755
BsaJI CCNNGG 3 cut(s) 8, 67, 108
BsaWI WCCGGW 2 cut(s) 124, 223
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse118I RCCGGY 2 cut(s) 370, 456
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 741
BseAI TCCGGA 1 cut(s) 223
BseDI CCNNGG 3 cut(s) 8, 67, 108
BseGI GGATG 3 cut(s) 48, 582, 658
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 2 cut(s) 44, 557
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 4 cut(s) 64, 125, 613, 706
BseYI CCCAGC 1 cut(s) 548
Bsh1236I CGCG 2 cut(s) 40, 94
BshFI GGCC 3 cut(s) 60, 153, 374
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 7 cut(s) 125, 224, 251, 371, 457, 754, 801
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 544
BsnI GGCC 3 cut(s) 60, 153, 374
Bsp1286I GDGCHC 2 cut(s) 25, 50
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 655
BspACI CCGC 1 cut(s) 40
BspANI GGCC 3 cut(s) 60, 153, 374
BspCNI CTCAG 2 cut(s) 43, 558
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 2 cut(s) 40, 94
BspLI GGNNCC 2 cut(s) 123, 853
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 741
BsrFI RCCGGY 2 cut(s) 370, 456
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 2 cut(s) 370, 456
BssECI CCNNGG 3 cut(s) 8, 67, 108
BssMI GATC 1 cut(s) 655
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 234, 698
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 50, 305
BstDEI CTNAG 5 cut(s) 30, 198, 533, 543, 566
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 3 cut(s) 48, 582, 658
BstFNI CGCG 2 cut(s) 40, 94
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 4 cut(s) 113, 119, 309, 623
BstSCI CCNGG 1 cut(s) 753
BstUI CGCG 2 cut(s) 40, 94
BstV1I GCAGC 4 cut(s) 64, 125, 613, 706
BsuRI GGCC 3 cut(s) 60, 153, 374
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 3 cut(s) 48, 582, 658
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 50, 305
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 370, 456
Cfr13I GGNCC 1 cut(s) 852
Csp6I GTAC 1 cut(s) 431
CviAII CATG 2 cut(s) 521, 811
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 5 cut(s) 30, 198, 533, 543, 566
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 25, 50
Eco47I GGWCC 1 cut(s) 852
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 25, 50
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 524, 814
FatI CATG 2 cut(s) 520, 810
FauNDI CATATG 2 cut(s) 438, 671
Fnu4HI GCNGC 5 cut(s) 5, 53, 114, 627, 720
FokI GGATG 3 cut(s) 55, 589, 665
FriOI GRGCYC 2 cut(s) 25, 50
Fsp4HI GCNGC 5 cut(s) 5, 53, 114, 627, 720
GlaI GCGC 1 cut(s) 95
GluI GCNGC 5 cut(s) 5, 53, 114, 627, 720
GsaI CCCAGC 1 cut(s) 552
HaeIII GGCC 3 cut(s) 60, 153, 374
HapII CCGG 7 cut(s) 125, 224, 251, 371, 457, 754, 801
HhaI GCGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 524, 814
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 2 cut(s) 227, 537
HpaII CCGG 7 cut(s) 125, 224, 251, 371, 457, 754, 801
HphI GGTGA 2 cut(s) 184, 222
Hpy166II GTNNAC 2 cut(s) 556, 816
Hpy188I TCNGA 1 cut(s) 691
Hpy188III TCNNGA 6 cut(s) 143, 224, 638, 726, 832, 855
Hpy8I GTNNAC 2 cut(s) 556, 816
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 473, 574
HpyCH4III ACNGT 2 cut(s) 234, 698
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 722, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 119, 309, 623
HpyF3I CTNAG 5 cut(s) 30, 198, 533, 543, 566
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 2 cut(s) 524, 814
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 2 cut(s) 15, 127
Lsp1109I GCAGC 4 cut(s) 64, 125, 613, 706
LweI GCATC 3 cut(s) 279, 613, 731
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 228
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 1 cut(s) 604
MhlI GDGCHC 2 cut(s) 25, 50
MluCI AATT 3 cut(s) 175, 805, 842
MlyI GAGTC 2 cut(s) 236, 546
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 4 cut(s) 267, 282, 408, 776
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 7 cut(s) 125, 224, 251, 371, 457, 754, 801
MspR9I CCNGG 1 cut(s) 755
MvnI CGCG 2 cut(s) 40, 94
MwoI GCNNNNNNNGC 4 cut(s) 113, 119, 309, 623
NciI CCSGG 1 cut(s) 755
NdeI CATATG 2 cut(s) 438, 671
NdeII GATC 1 cut(s) 655
NlaIII CATG 2 cut(s) 524, 814
NlaIV GGNNCC 2 cut(s) 123, 853
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 228
PceI AGGCCT 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 5 cut(s) 6, 54, 115, 628, 721
PleI GAGTC 2 cut(s) 235, 545
PpsI GAGTC 2 cut(s) 235, 545
Psp124BI GAGCTC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 548
PspN4I GGNNCC 2 cut(s) 123, 853
PspPI GGNCC 1 cut(s) 852
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 4 cut(s) 267, 282, 408, 776
SatI GCNGC 5 cut(s) 5, 53, 114, 627, 720
Sau3AI GATC 1 cut(s) 655
Sau96I GGNCC 1 cut(s) 852
SchI GAGTC 2 cut(s) 236, 546
ScrFI CCNGG 1 cut(s) 755
SduI GDGCHC 2 cut(s) 25, 50
SfaNI GCATC 3 cut(s) 279, 613, 731
SinI GGWCC 1 cut(s) 852
SmlI CTYRAG 2 cut(s) 281, 357
SmoI CTYRAG 2 cut(s) 281, 357
Sse9I AATT 3 cut(s) 175, 805, 842
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 610
SstI GAGCTC 1 cut(s) 25
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 753
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 234, 698
TaiI ACGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 322, 831
TasI AATT 3 cut(s) 175, 805, 842
TatI WGTACW 1 cut(s) 430
Tru1I TTAA 4 cut(s) 267, 282, 408, 776
Tru9I TTAA 4 cut(s) 267, 282, 408, 776
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 5 cut(s) 4, 52, 113, 626, 719
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 4 cut(s) 425, 593, 690, 799
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 526
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 852
XapI RAATTY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 3 cut(s) 115, 166, 669
XmnI GAANNNNTTC 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.