MD07G1249400.v1.1

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006864
Physical Location & Seq
Forward (+)
31832282 .. 31835429
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1249400.v1.1.491

Sequence Viewer

Length: 873 bp
ATGCTGCCGAGATGGAGCAGAGCTGTTGCTCAGCTCTCGAGGCTGGGTACGCAGCAGAACCTGAATCTCAGAAACGAATTCTATGTTGTTTCGCGCCAAACCTATGCCAGGGCTGCTGCTGCAGTTGCTCCTGATACCGCTTTTACTGTGGAAAAACCTCTTCCTGCCGAGCCAGTGGTAAATTTGGACAAATTGTTTTGGTCTAAGCCCTCCTCATTGGCTTTGGCCCCGGACTCCCCATTGAGAATTGATGAGCCACAATATGGGAGCTTTAAGCGTGCGATTCTTAGGATGTTGCTGTTTTATAGCAAACAAAGCAAGTCTATTCGAGGGGCCAATGTCGTGTATAAGCGAATCGTTTCACAAGTTGATAAGCCGGGCATCTATGAAGTATTCAATTTGGAGAAAACCTTTAAGACAACATTCTCTCTACTTGTACTACATATGTGGCTTTGCTTACGCCGGTTGAAAGAAGAGGGAAAGGATGGTGTTGAATTCGGGCAATACATATATGAGATTTACAATCATGATGTGGAACTTAGGGTATCTAAGGCTGGGGTCAACTTACTACTAACTAGATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCCCTGCTTCAAGAGGCTAAACTGGATGATCTGCAAAATGTGATATGGAGGAATGTCTTTTCTGACGATGGTTCATCACAACCAACTGGAGATGCATCACGAGCAGTCCAGGCAATGGCAAGATATATTCGCCGGGAACTTTCTTGCCTGTCCTTAACAGACAAAGAAGCTATGTTTTCTGGTAATTTCATGTTTACTCCGCTGAAGGGCGAGAAAGCGAAATCGGAGGCAACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

291

Amino Acids

33.07

Weight (kDa)

9.39

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 131 - 275 8.3e-38 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 263, 748
AccII CGCG 1 cut(s) 94
AciI CCGC 2 cut(s) 138, 833
AcsI RAATTY 3 cut(s) 77, 181, 494
AcuI CTGAAG 1 cut(s) 857
AfaI GTAC 2 cut(s) 49, 438
AfiI CCNNNNNNNGG 4 cut(s) 108, 263, 748, 839
AgsI TTSAA 4 cut(s) 397, 469, 494, 644
AjnI CCWGG 2 cut(s) 107, 741
AluBI AGCT 4 cut(s) 23, 34, 270, 803
AluI AGCT 4 cut(s) 23, 34, 270, 803
AlwNI CAGNNNCTG 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 2 cut(s) 225, 333
ApeKI GCWGC 6 cut(s) 4, 52, 113, 116, 119, 632
ApoI RAATTY 3 cut(s) 77, 181, 494
Asp700I GAANNNNTTC 2 cut(s) 358, 602
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 226, 333
AsuC2I CCSGG 3 cut(s) 230, 378, 767
AvaI CYCGRG 1 cut(s) 37
BauI CACGAG 1 cut(s) 732
BbvI GCAGC 5 cut(s) 64, 100, 103, 106, 619
BccI CCATC 4 cut(s) 6, 479, 573, 695
BciT130I CCWGG 2 cut(s) 109, 743
BcnI CCSGG 3 cut(s) 230, 378, 767
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 6 cut(s) 5, 53, 114, 117, 120, 633
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 6 cut(s) 6, 54, 115, 118, 121, 634
Bme1390I CCNGG 5 cut(s) 109, 230, 378, 743, 767
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 226, 333
BmiI GGNNCC 2 cut(s) 228, 334
BmrFI CCNGG 5 cut(s) 109, 230, 378, 743, 767
BmsI GCATC 4 cut(s) 390, 619, 715, 737
BpmI CTGGAG 1 cut(s) 741
Bpu1102I GCTNAGC 1 cut(s) 30
BpuMI CCSGG 3 cut(s) 230, 378, 767
BsaJI CCNNGG 2 cut(s) 108, 228
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 263, 748, 839
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 3 cut(s) 173, 660, 724
Bse3DI GCAATG 1 cut(s) 753
BseBI CCWGG 2 cut(s) 109, 743
BseDI CCNNGG 2 cut(s) 108, 228
BseGI GGATG 4 cut(s) 297, 490, 588, 664
BseLI CCNNNNNNNGG 4 cut(s) 108, 263, 748, 839
BseMI GCAATG 1 cut(s) 753
BseMII CTCAG 2 cut(s) 44, 82
BseNI ACTGG 3 cut(s) 173, 660, 724
BseRI GAGGAG 1 cut(s) 202
BseXI GCAGC 5 cut(s) 64, 100, 103, 106, 619
BseYI CCCAGC 2 cut(s) 43, 554
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 227, 335
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 4 cut(s) 230, 377, 463, 766
BslI CCNNNNNNNGG 4 cut(s) 108, 263, 748, 839
BsnI GGCC 2 cut(s) 227, 335
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 1 cut(s) 661
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 2 cut(s) 138, 833
BspANI GGCC 2 cut(s) 227, 335
BspCNI CTCAG 2 cut(s) 43, 81
BspFNI CGCG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 228, 334
BspMAI CTGCAG 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 753
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 3 cut(s) 173, 660, 724
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 2 cut(s) 108, 228
BssMI GATC 1 cut(s) 661
BssSI CACGAG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 109, 743
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 165, 468
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 6 cut(s) 30, 68, 204, 287, 539, 549
BstENI CCTNNNNNAGG 1 cut(s) 106
BstF5I GGATG 4 cut(s) 297, 490, 588, 664
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 664
BstMBI GATC 1 cut(s) 661
BstMWI GCNNNNNNNGC 9 cut(s) 40, 49, 113, 119, 125, 315, 629, 734, 743
BstNI CCWGG 2 cut(s) 109, 743
BstSCI CCNGG 5 cut(s) 107, 228, 376, 741, 765
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 5 cut(s) 64, 100, 103, 106, 619
BsuRI GGCC 2 cut(s) 227, 335
BtsCI GGATG 4 cut(s) 297, 490, 588, 664
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 279
CaiI CAGNNNCTG 1 cut(s) 61
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 2 cut(s) 226, 333
Csp6I GTAC 2 cut(s) 48, 437
CviAII CATG 2 cut(s) 527, 823
CviQI GTAC 2 cut(s) 48, 437
DdeI CTNAG 6 cut(s) 30, 68, 204, 287, 539, 549
DpnI GATC 1 cut(s) 663
DpnII GATC 1 cut(s) 661
Eam1104I CTCTTC 2 cut(s) 165, 468
EarI CTCTTC 2 cut(s) 165, 468
Eco57I CTGAAG 1 cut(s) 857
Eco88I CYCGRG 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 106
EcoRI GAATTC 2 cut(s) 77, 494
EcoRII CCWGG 2 cut(s) 107, 741
EcoT22I ATGCAT 1 cut(s) 730
FaeI CATG 2 cut(s) 530, 826
FatI CATG 2 cut(s) 526, 822
FauNDI CATATG 1 cut(s) 444
Fnu4HI GCNGC 6 cut(s) 5, 53, 114, 117, 120, 633
FokI GGATG 4 cut(s) 304, 497, 595, 671
Fsp4HI GCNGC 6 cut(s) 5, 53, 114, 117, 120, 633
FspBI CTAG 1 cut(s) 576
GlaI GCGC 1 cut(s) 95
GluI GCNGC 6 cut(s) 5, 53, 114, 117, 120, 633
GsaI CCCAGC 2 cut(s) 47, 558
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 2 cut(s) 227, 335
HapII CCGG 4 cut(s) 230, 377, 463, 766
HhaI GCGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 530, 826
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 4 cut(s) 64, 233, 283, 354
HpaII CCGG 4 cut(s) 230, 377, 463, 766
Hpy166II GTNNAC 2 cut(s) 562, 828
Hpy188I TCNGA 3 cut(s) 71, 697, 859
Hpy188III TCNNGA 5 cut(s) 37, 131, 527, 644, 732
Hpy8I GTNNAC 2 cut(s) 562, 828
HpyAV CCTTC 2 cut(s) 580, 832
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 122, 667, 728
HpyF10VI GCNNNNNNNGC 9 cut(s) 40, 49, 113, 119, 125, 315, 629, 734, 743
HpyF3I CTNAG 6 cut(s) 30, 68, 204, 287, 539, 549
Hsp92II CATG 2 cut(s) 530, 826
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 661
LmnI GCTCC 3 cut(s) 15, 133, 267
Lsp1109I GCAGC 5 cut(s) 64, 100, 103, 106, 619
LweI GCATC 4 cut(s) 390, 619, 715, 737
MaeI CTAG 1 cut(s) 576
MalI GATC 1 cut(s) 663
MboI GATC 1 cut(s) 661
MboII GAAGA 3 cut(s) 152, 485, 610
MluCI AATT 7 cut(s) 77, 181, 191, 246, 397, 494, 817
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 9 cut(s) 33, 168, 220, 223, 323, 469, 640, 675, 853
Mph1103I ATGCAT 1 cut(s) 730
MroXI GAANNNNTTC 2 cut(s) 358, 602
MseI TTAA 3 cut(s) 273, 414, 788
MspA1I CMGCKG 1 cut(s) 835
MspI CCGG 4 cut(s) 230, 377, 463, 766
MspR9I CCNGG 5 cut(s) 109, 230, 378, 743, 767
MvaI CCWGG 2 cut(s) 109, 743
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 9 cut(s) 40, 49, 113, 119, 125, 315, 629, 734, 743
NciI CCSGG 3 cut(s) 230, 378, 767
NdeI CATATG 1 cut(s) 444
NdeII GATC 1 cut(s) 661
NlaIII CATG 2 cut(s) 530, 826
NlaIV GGNNCC 2 cut(s) 228, 334
NmeAIII GCCGAG 2 cut(s) 33, 193
NsiI ATGCAT 1 cut(s) 730
PaeR7I CTCGAG 1 cut(s) 37
PagI TCATGA 1 cut(s) 526
PdmI GAANNNNTTC 2 cut(s) 358, 602
PfeI GAWTC 3 cut(s) 64, 283, 354
PflMI CCANNNNNTGG 2 cut(s) 263, 748
PkrI GCNGC 6 cut(s) 6, 54, 115, 118, 121, 634
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 107, 741
PspFI CCCAGC 2 cut(s) 43, 554
PspGI CCWGG 2 cut(s) 107, 741
PspN4I GGNNCC 2 cut(s) 228, 334
PspPI GGNCC 2 cut(s) 226, 333
PstI CTGCAG 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 49, 438
RsaNI GTAC 2 cut(s) 48, 437
SaqAI TTAA 3 cut(s) 273, 414, 788
SatI GCNGC 6 cut(s) 5, 53, 114, 117, 120, 633
Sau3AI GATC 1 cut(s) 661
Sau96I GGNCC 2 cut(s) 226, 333
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 5 cut(s) 109, 230, 378, 743, 767
SetI ASST 8 cut(s) 25, 36, 63, 104, 160, 272, 413, 805
SfaNI GCATC 4 cut(s) 390, 619, 715, 737
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 7 cut(s) 77, 181, 191, 246, 397, 494, 817
SsiI CCGC 2 cut(s) 138, 833
SspI AATATT 1 cut(s) 616
SspMI CTAG 1 cut(s) 576
StyD4I CCNGG 5 cut(s) 107, 228, 376, 741, 765
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 38, 328
TasI AATT 7 cut(s) 77, 181, 191, 246, 397, 494, 817
TatI WGTACW 1 cut(s) 436
TfiI GAWTC 3 cut(s) 64, 283, 354
Tru1I TTAA 3 cut(s) 273, 414, 788
Tru9I TTAA 3 cut(s) 273, 414, 788
TscAI CASTG 1 cut(s) 180
TseI GCWGC 6 cut(s) 4, 52, 113, 116, 119, 632
TspDTI ATGAA 4 cut(s) 402, 599, 696, 811
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 2 cut(s) 263, 748
XagI CCTNNNNNAGG 1 cut(s) 106
XapI RAATTY 3 cut(s) 77, 181, 494
XhoI CTCGAG 1 cut(s) 37
XmnI GAANNNNTTC 2 cut(s) 358, 602
XspI CTAG 1 cut(s) 576
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.