RchiOBHm_Chr1g0373791

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006864
Physical Location & Seq
Forward (+)
61835581 .. 61837753
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59763

Sequence Viewer

Length: 852 bp
ATGCTTCCGAGGTGGAGCAGAGCTCTCACTCAGCTCTCGCGGCTGGGCTCGCAGCGTGGCCTGAACCACGGAAACGATTTCTATGCCATTTCGCGCCAAAGCTACGCCAAGGCAGCTGTGGCTCCGGTTATGGCTGATACTCTGGAAAAAGGCCTCCCCACCGAGCCCGTGGTGAATTTGGACAAGCTGTTTTGGTCTAAGCCTTGCTCGTTGGCTTTGCCTCCGGAGTCGCCGTTGAGGATTGATGAGCCGGAGTATGAGGGCATTAAGCGTGTGTTTCTTAAGCTGATGCTGTTTTACAGCAAGCAAAGCAAGTCTATTCGAGGGGCGAATGTGGTGTATAAGAGAGTCGTTTCCCAAGTTGATAAACCGGCCATATACGAAGTGTTCAACTTGGAGAAAACTTTTAAGACGACGTATGCTTTGCTTGTACTTCATATGTGGCTTTGCCTACGCCGGTTGAAACAAGAGGGAAAAGAAGGTGTTGAGTTCGGGCAATATGTGTATGAGATTTACAACCATGATGTGGAACTTAGAGTCTCTAGGGCTGGGGTCAACTTGCTACTGAGTAAATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCTGTGCTTCCAGAGGCAAGGCTGGATGATCTGCCAAATGTCATATGGAGGAATGTCTTTTCTGATGATGGTTCATCAAAGCCAGATGAGGCTGCATCACGAACCATCCAGGCACGCTCTCATTTTTCTTTTGTTGCAAAATTTAATGTAGTAATGTACTCTGTGAAATTCCACAAAATGCTTGATTCTCCAAGTTTAGAGTGTAGAAGTGTTATTTTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

283

Amino Acids

32.46

Weight (kDa)

9.15

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 129 - 236 1e-27 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 2 cut(s) 40, 94
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 3 cut(s) 175, 767, 794
AfaI GTAC 2 cut(s) 432, 785
AfiI CCNNNNNNNGG 1 cut(s) 526
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 391, 463
AjnI CCWGG 1 cut(s) 735
AluBI AGCT 6 cut(s) 23, 34, 102, 116, 187, 286
AluI AGCT 6 cut(s) 23, 34, 102, 116, 187, 286
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 58, 151, 372
ApeKI GCWGC 4 cut(s) 52, 113, 626, 719
ApoI RAATTY 3 cut(s) 175, 767, 794
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 184
BanII GRGCYC 3 cut(s) 25, 50, 168
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 4 cut(s) 64, 125, 613, 706
BccI CCATC 2 cut(s) 689, 740
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 737
BcoDI GTCTC 1 cut(s) 544
BfaI CTAG 1 cut(s) 543
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 5 cut(s) 41, 53, 114, 627, 720
BlsI GCNGC 5 cut(s) 42, 54, 115, 628, 721
Bme1390I CCNGG 1 cut(s) 737
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 3 cut(s) 279, 613, 731
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BsaJI CCNNGG 4 cut(s) 8, 67, 108, 168
BsaWI WCCGGW 2 cut(s) 124, 223
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse118I RCCGGY 2 cut(s) 370, 456
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 4 cut(s) 8, 67, 108, 168
BseGI GGATG 3 cut(s) 582, 658, 732
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMII CTCAG 2 cut(s) 44, 557
BseXI GCAGC 4 cut(s) 64, 125, 613, 706
BseYI CCCAGC 2 cut(s) 43, 548
Bsh1236I CGCG 2 cut(s) 40, 94
BshFI GGCC 3 cut(s) 60, 153, 374
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 5 cut(s) 125, 224, 251, 371, 457
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 544
BsnI GGCC 3 cut(s) 60, 153, 374
Bsp1286I GDGCHC 3 cut(s) 25, 50, 168
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 655
BspACI CCGC 1 cut(s) 40
BspANI GGCC 3 cut(s) 60, 153, 374
BspCNI CTCAG 2 cut(s) 43, 558
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 2 cut(s) 40, 94
BspLI GGNNCC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 281
BsrFI RCCGGY 2 cut(s) 370, 456
BssAI RCCGGY 2 cut(s) 370, 456
BssECI CCNNGG 4 cut(s) 8, 67, 108, 168
BssMI GATC 1 cut(s) 655
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 737
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 50, 305, 742
BstDEI CTNAG 4 cut(s) 30, 198, 533, 566
BstDSI CCRYGG 2 cut(s) 67, 168
BstF5I GGATG 3 cut(s) 582, 658, 732
BstFNI CGCG 2 cut(s) 40, 94
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 1 cut(s) 735
BstUI CGCG 2 cut(s) 40, 94
BstV1I GCAGC 4 cut(s) 64, 125, 613, 706
BsuRI GGCC 3 cut(s) 60, 153, 374
BtgI CCRYGG 2 cut(s) 67, 168
BtsCI GGATG 3 cut(s) 582, 658, 732
Cac8I GCNNGC 3 cut(s) 50, 305, 742
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 370, 456
Csp6I GTAC 2 cut(s) 431, 784
CviAII CATG 1 cut(s) 521
CviQI GTAC 2 cut(s) 431, 784
DdeI CTNAG 4 cut(s) 30, 198, 533, 566
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 3 cut(s) 25, 50, 168
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 3 cut(s) 25, 50, 168
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 524
FatI CATG 1 cut(s) 520
FauNDI CATATG 2 cut(s) 438, 671
Fnu4HI GCNGC 5 cut(s) 41, 53, 114, 627, 720
FokI GGATG 3 cut(s) 589, 665, 719
FriOI GRGCYC 3 cut(s) 25, 50, 168
Fsp4HI GCNGC 5 cut(s) 41, 53, 114, 627, 720
FspBI CTAG 1 cut(s) 543
GlaI GCGC 1 cut(s) 95
GluI GCNGC 5 cut(s) 41, 53, 114, 627, 720
GsaI CCCAGC 2 cut(s) 47, 552
HaeIII GGCC 3 cut(s) 60, 153, 374
HapII CCGG 5 cut(s) 125, 224, 251, 371, 457
HhaI GCGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 4 cut(s) 227, 348, 537, 812
HpaII CCGG 5 cut(s) 125, 224, 251, 371, 457
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 2 cut(s) 9, 691
Hpy188III TCNNGA 4 cut(s) 143, 224, 638, 726
Hpy8I GTNNAC 1 cut(s) 556
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 473, 574
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 722, 764
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
HpyF3I CTNAG 4 cut(s) 30, 198, 533, 566
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 2 cut(s) 15, 127
Lsp1109I GCAGC 4 cut(s) 64, 125, 613, 706
LweI GCATC 3 cut(s) 279, 613, 731
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 416
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 1 cut(s) 604
MhlI GDGCHC 3 cut(s) 25, 50, 168
MluCI AATT 3 cut(s) 175, 767, 794
MlyI GAGTC 3 cut(s) 236, 357, 546
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 4 cut(s) 267, 282, 408, 771
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 5 cut(s) 125, 224, 251, 371, 457
MspR9I CCNGG 1 cut(s) 737
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 2 cut(s) 40, 94
MwoI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
NdeI CATATG 2 cut(s) 438, 671
NdeII GATC 1 cut(s) 655
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 1 cut(s) 123
PceI AGGCCT 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 812
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 5 cut(s) 42, 54, 115, 628, 721
PleI GAGTC 3 cut(s) 235, 356, 545
PpsI GAGTC 3 cut(s) 235, 356, 545
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 2 cut(s) 43, 548
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 2 cut(s) 432, 785
RsaNI GTAC 2 cut(s) 431, 784
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 4 cut(s) 267, 282, 408, 771
SatI GCNGC 5 cut(s) 41, 53, 114, 627, 720
Sau3AI GATC 1 cut(s) 655
SchI GAGTC 3 cut(s) 236, 357, 546
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 3 cut(s) 25, 50, 168
SetI ASST 9 cut(s) 14, 25, 36, 104, 118, 189, 288, 419, 484
SfaNI GCATC 3 cut(s) 279, 613, 731
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 175, 767, 794
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 610
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 25
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 419
TaqI TCGA 1 cut(s) 322
TasI AATT 3 cut(s) 175, 767, 794
TatI WGTACW 2 cut(s) 430, 783
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 812
Tru1I TTAA 4 cut(s) 267, 282, 408, 771
Tru9I TTAA 4 cut(s) 267, 282, 408, 771
TseI GCWGC 4 cut(s) 52, 113, 626, 719
TspDTI ATGAA 3 cut(s) 425, 593, 690
TspGWI ACGGA 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 526
Vha464I CTTAAG 1 cut(s) 281
XapI RAATTY 3 cut(s) 175, 767, 794
XcmI CCANNNNNNNNNTGG 3 cut(s) 115, 166, 669
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.