Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006864

Physical Location & Seq

Genomic Coordinates Forward (+)

23670801 .. 23673880

Gene Structure 3080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22270.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGACGATACAAAATTATTATGACATATTCATTGTGTGCTTTACTGCCTTAGTCCAATTCCCCCACTGCTCGAAACTTTGTAGGTTGAGGAAAAAAAGGGCAAGAGAACATGGGGTTCGCCGGACTTCCACGCCTACGCAGTCGCTCCCGTTAGTTTTTTTACTACGCGCGCTCCTCCTTCCCGCTCCGTTTCTCATTCGCGCACTCCTCTGTAGGGTTTTGGAATCACAAAACTCTCAAGCATTTCCATCAACTGCAACTCAAAACCTTTCGAATTTCAACCTAAGGGAGCTCGAGATGCTGCCGAGATGGAGCAGAGCTGTTGCTCAGCTCTCGAGGCTGGGTACGCAGCAGAACCTGAATCTCAGAAACGAATTCTATGTTGTTTCGCGCCAAACGTATGCCAGGGCTGCTGCAGTTGCTCCCGATACGGCTTTTACTGTGGAAAAACCTCTACCTGCTGAGCCAGTGGTAAATTTGGACAAATTGTTTTGGTCTAAGCCCTCCTCATTGGCTTTGGCCTCGGACTCCCCATTGAGAATTGATGAGCCACAATATGGGAGCTTTAAGCGTGCGATTCTTAGGATGTTGCTGTTTTATAGCAAACAAAGCAAGTCTATTCGAGGGGCTAATGTCGTGTATAAGCGAATTGTTTCACAAGTTGATAAGCCGGGCATCTATGAAGTATTCAATTTGGAGAAAACCTTTAAGACAACGTTCTCTCTACTTGTACTTCATATGTGGCTTTGCTTACGCCGGTTGAAAGAAGAGGGAAAGGATGGTGTTGAATTCGGGCAACACATATATGAGATTTACAATCATGATGTGGAACTTAGGGTGTCTAAGGCTGGGGTCAACTTACTACTGACTAGATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCCGTGCTTCCAGAGGCTAAACTTGATGATCTGCAAAATGTGATATGGAGGAATGTCTTTTCTGACGATGGTTCATCGCAACCAACTGGAGATGCATCACGAGCAGTCCAGGCTATGGCAAGATATATTCGCCGGGAACTTTCTTGCCTGTCCTTAACAGGTATCCCTTGTTTGTTCTTTGTGTTTCCTGTTCTGCATTCGGTTCTGTTGAGATTGCACAAGAACTCTCCATCTCTTCGCGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ubiq_cyt_C_chap

Protein Analysis

392

Amino Acids

44.77

Weight (kDa)

9.7

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51220 AT5G51220 AT5G51220
fragaria_vesca	FvH4_7g27000 FvH4_7g27000 FvH4_7g27000 FvH4_7g27000
malus_domestica	MD01G1177600.v1.1 MD07G1249400.v1.1
prunus_persica	Prupe.2G273100_v2.0.a1 Prupe.2G273100_v2.0.a1 Prupe.2G273100_v2.0.a1
pyrus_communis	pycom07g22270
rosa_chinensis	RchiOBHm_Chr1g0373791
rosa_laevigata	RLG00000026805
rosa_multiflora	Rmu_co8123160.1_g000001 Rmu_sc0013735.1_g000008 Rmu_sc0015585.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284000
rosa_rugosa	Rorug01G0379500 Rorug01G0379500
rosa_samantha	Rh1AG388800 Rh1BG353000 Rh1CG366000 Rh1DG383700
rosa_wichuraiana	Rw1G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccB7I	CCANNNNNTGG	2 cut(s)	557, 1042
AccBSI	CCGCTC	1 cut(s)	185
AccII	CGCG	5 cut(s)	168, 170, 201, 391, 1167
AciI	CCGC	1 cut(s)	183
AclI	AACGTT	1 cut(s)	716
AcsI	RAATTY	4 cut(s)	274, 374, 475, 788
AfaI	GTAC	2 cut(s)	346, 732
AfiI	CCNNNNNNNGG	3 cut(s)	214, 557, 1042
AgsI	TTSAA	4 cut(s)	280, 691, 763, 788
AjnI	CCWGG	2 cut(s)	404, 1035
AluBI	AGCT	4 cut(s)	292, 320, 331, 564
AluI	AGCT	4 cut(s)	292, 320, 331, 564
Alw21I	GWGCWC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	358
Ama87I	CYCGRG	2 cut(s)	293, 334
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	5 cut(s)	301, 349, 410, 413, 926
ApoI	RAATTY	4 cut(s)	274, 374, 475, 788
Asp700I	GAANNNNTTC	2 cut(s)	652, 896
AspLEI	GCGC	4 cut(s)	170, 172, 203, 393
AsuC2I	CCSGG	2 cut(s)	672, 1061
AsuII	TTCGAA	1 cut(s)	272
AvaI	CYCGRG	2 cut(s)	293, 334
AxyI	CCTNAGG	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	1026
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	5 cut(s)	288, 361, 397, 400, 913
BccI	CCATC	6 cut(s)	256, 303, 773, 867, 989, 1165
BceAI	ACGGC	2 cut(s)	447, 914
BciT130I	CCWGG	2 cut(s)	406, 1037
BciVI	GTATCC	1 cut(s)	1100
BcnI	CCSGG	2 cut(s)	672, 1061
BfaI	CTAG	1 cut(s)	870
BfmI	CTRYAG	2 cut(s)	211, 414
BfuAI	ACCTGC	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	1100
BisI	GCNGC	5 cut(s)	302, 350, 411, 414, 927
BlpI	GCTNAGC	2 cut(s)	327, 462
BlsI	GCNGC	5 cut(s)	303, 351, 412, 415, 928
Bme1390I	CCNGG	4 cut(s)	406, 672, 1037, 1061
BmeT110I	CYCGRG	2 cut(s)	293, 334
BmrFI	CCNGG	4 cut(s)	406, 672, 1037, 1061
BmsI	GCATC	5 cut(s)	288, 684, 913, 1009, 1031
BpmI	CTGGAG	1 cut(s)	1035
Bpu1102I	GCTNAGC	2 cut(s)	327, 462
Bpu14I	TTCGAA	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	2 cut(s)	672, 1061
BsaJI	CCNNGG	2 cut(s)	405, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 557, 1042
Bse118I	RCCGGY	1 cut(s)	756
Bse1I	ACTGG	2 cut(s)	467, 1018
Bse21I	CCTNAGG	1 cut(s)	284
BseBI	CCWGG	2 cut(s)	406, 1037
BseDI	CCNNGG	2 cut(s)	405, 522
BseGI	GGATG	3 cut(s)	591, 784, 882
BseLI	CCNNNNNNNGG	3 cut(s)	214, 557, 1042
BseMII	CTCAG	3 cut(s)	341, 379, 453
BseNI	ACTGG	2 cut(s)	467, 1018
BsePI	GCGCGC	1 cut(s)	168
BseRI	GAGGAG	3 cut(s)	164, 197, 496
BseXI	GCAGC	5 cut(s)	288, 361, 397, 400, 913
BseYI	CCCAGC	2 cut(s)	340, 848
Bsh1236I	CGCG	5 cut(s)	168, 170, 201, 391, 1167
BshFI	GGCC	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	2 cut(s)	293, 334
BsiSI	CCGG	4 cut(s)	121, 671, 757, 1060
BslI	CCNNNNNNNGG	3 cut(s)	214, 557, 1042
BsmI	GAATGC	1 cut(s)	1123
BsnI	GGCC	1 cut(s)	521
BsoBI	CYCGRG	2 cut(s)	293, 334
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	955
Bsp1720I	GCTNAGC	2 cut(s)	327, 462
Bsp68I	TCGCGA	1 cut(s)	1167
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	3 cut(s)	340, 378, 454
BspFNI	CGCG	5 cut(s)	168, 170, 201, 391, 1167
BspHI	TCATGA	1 cut(s)	820
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	466
BspT104I	TTCGAA	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	467, 1018
BssAI	RCCGGY	1 cut(s)	756
BssECI	CCNNGG	2 cut(s)	405, 522
BssHII	GCGCGC	1 cut(s)	168
BssMI	GATC	1 cut(s)	955
BssSI	CACGAG	1 cut(s)	1026
Bst2BI	CACGAG	1 cut(s)	1026
Bst2UI	CCWGG	2 cut(s)	406, 1037
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	2 cut(s)	762, 1167
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	170, 573
BstDEI	CTNAG	9 cut(s)	49, 284, 327, 365, 462, 498, 581, 833, 843
BstF5I	GGATG	3 cut(s)	591, 784, 882
BstFNI	CGCG	5 cut(s)	168, 170, 201, 391, 1167
BstHHI	GCGC	4 cut(s)	170, 172, 203, 393
BstKTI	GATC	1 cut(s)	958
BstMBI	GATC	1 cut(s)	955
BstMWI	GCNNNNNNNGC	9 cut(s)	298, 337, 346, 410, 419, 609, 923, 1028, 1037
BstNI	CCWGG	2 cut(s)	406, 1037
BstSCI	CCNGG	4 cut(s)	404, 670, 1035, 1059
BstSFI	CTRYAG	2 cut(s)	211, 414
BstUI	CGCG	5 cut(s)	168, 170, 201, 391, 1167
BstV1I	GCAGC	5 cut(s)	288, 361, 397, 400, 913
Bsu36I	CCTNAGG	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	1100
BsuRI	GGCC	1 cut(s)	521
BtgZI	GCGATG	1 cut(s)	987
BtsCI	GGATG	3 cut(s)	591, 784, 882
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	64, 474
BtuMI	TCGCGA	1 cut(s)	1167
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	2 cut(s)	170, 573
CaiI	CAGNNNCTG	1 cut(s)	358
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	4 cut(s)	170, 172, 203, 393
Cfr10I	RCCGGY	1 cut(s)	756
Csp6I	GTAC	2 cut(s)	345, 731
CviAII	CATG	2 cut(s)	110, 821
CviQI	GTAC	2 cut(s)	345, 731
DdeI	CTNAG	9 cut(s)	49, 284, 327, 365, 462, 498, 581, 833, 843
DpnI	GATC	1 cut(s)	957
DpnII	GATC	1 cut(s)	955
Eam1104I	CTCTTC	2 cut(s)	762, 1167
EarI	CTCTTC	2 cut(s)	762, 1167
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
Eco81I	CCTNAGG	1 cut(s)	284
Eco88I	CYCGRG	2 cut(s)	293, 334
EcoICRI	GAGCTC	1 cut(s)	292
EcoRI	GAATTC	2 cut(s)	374, 788
EcoRII	CCWGG	2 cut(s)	404, 1035
EcoT22I	ATGCAT	1 cut(s)	1024
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	113, 824
FatI	CATG	2 cut(s)	109, 820
FauI	CCCGC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	738
Fnu4HI	GCNGC	5 cut(s)	302, 350, 411, 414, 927
FokI	GGATG	3 cut(s)	598, 791, 889
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	5 cut(s)	302, 350, 411, 414, 927
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	4 cut(s)	169, 171, 202, 392
GluI	GCNGC	5 cut(s)	302, 350, 411, 414, 927
GsaI	CCCAGC	2 cut(s)	344, 852
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	4 cut(s)	121, 671, 757, 1060
HhaI	GCGC	4 cut(s)	170, 172, 203, 393
Hin1II	CATG	2 cut(s)	113, 824
Hin6I	GCGC	4 cut(s)	168, 170, 201, 391
HinP1I	GCGC	4 cut(s)	168, 170, 201, 391
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	4 cut(s)	224, 361, 527, 577
HpaII	CCGG	4 cut(s)	121, 671, 757, 1060
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	3 cut(s)	368, 526, 991
Hpy188III	TCNNGA	7 cut(s)	295, 334, 425, 821, 938, 1026, 1166
Hpy8I	GTNNAC	1 cut(s)	856
HpyAV	CCTTC	2 cut(s)	188, 874
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	2 cut(s)	398, 716
HpyCH4V	TGCA	6 cut(s)	257, 416, 961, 1022, 1123, 1144
HpyF10VI	GCNNNNNNNGC	9 cut(s)	298, 337, 346, 410, 419, 609, 923, 1028, 1037
HpyF3I	CTNAG	9 cut(s)	49, 284, 327, 365, 462, 498, 581, 833, 843
HpySE526I	ACGT	2 cut(s)	398, 716
Hsp92II	CATG	2 cut(s)	113, 824
HspAI	GCGC	4 cut(s)	168, 170, 201, 391
Kzo9I	GATC	1 cut(s)	955
LmnI	GCTCC	7 cut(s)	150, 177, 190, 289, 312, 427, 561
Lsp1109I	GCAGC	5 cut(s)	288, 361, 397, 400, 913
LweI	GCATC	5 cut(s)	288, 684, 913, 1009, 1031
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	2 cut(s)	398, 716
MalI	GATC	1 cut(s)	957
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	1 cut(s)	955
MboII	GAAGA	3 cut(s)	779, 904, 1154
MhlI	GDGCHC	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	521
Mph1103I	ATGCAT	1 cut(s)	1024
MroXI	GAANNNNTTC	2 cut(s)	652, 896
MseI	TTAA	3 cut(s)	567, 708, 1082
MslI	CAYNNNNRTG	1 cut(s)	804
MspI	CCGG	4 cut(s)	121, 671, 757, 1060
MspR9I	CCNGG	4 cut(s)	406, 672, 1037, 1061
Mva1269I	GAATGC	1 cut(s)	1123
MvaI	CCWGG	2 cut(s)	406, 1037
MvnI	CGCG	5 cut(s)	168, 170, 201, 391, 1167
MwoI	GCNNNNNNNGC	9 cut(s)	298, 337, 346, 410, 419, 609, 923, 1028, 1037
NciI	CCSGG	2 cut(s)	672, 1061
NdeI	CATATG	1 cut(s)	738
NdeII	GATC	1 cut(s)	955
NlaIII	CATG	2 cut(s)	113, 824
NmeAIII	GCCGAG	1 cut(s)	330
NruI	TCGCGA	1 cut(s)	1167
NsiI	ATGCAT	1 cut(s)	1024
NspV	TTCGAA	1 cut(s)	272
PaeR7I	CTCGAG	2 cut(s)	293, 334
PagI	TCATGA	1 cut(s)	820
PauI	GCGCGC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PctI	GAATGC	1 cut(s)	1123
PdmI	GAANNNNTTC	2 cut(s)	652, 896
PfeI	GAWTC	3 cut(s)	224, 361, 577
PflMI	CCANNNNNTGG	2 cut(s)	557, 1042
PkrI	GCNGC	5 cut(s)	303, 351, 412, 415, 928
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	716
Psp6I	CCWGG	2 cut(s)	404, 1035
PspFI	CCCAGC	2 cut(s)	340, 848
PspGI	CCWGG	2 cut(s)	404, 1035
PstI	CTGCAG	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	358
PteI	GCGCGC	1 cut(s)	168
RruI	TCGCGA	1 cut(s)	1167
RsaI	GTAC	2 cut(s)	346, 732
RsaNI	GTAC	2 cut(s)	345, 731
RseI	CAYNNNNRTG	1 cut(s)	804
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	567, 708, 1082
SatI	GCNGC	5 cut(s)	302, 350, 411, 414, 927
Sau3AI	GATC	1 cut(s)	955
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	4 cut(s)	406, 672, 1037, 1061
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	5 cut(s)	288, 684, 913, 1009, 1031
SfcI	CTRYAG	2 cut(s)	211, 414
Sfr274I	CTCGAG	2 cut(s)	293, 334
SfuI	TTCGAA	1 cut(s)	272
SlaI	CTCGAG	2 cut(s)	293, 334
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	3 cut(s)	237, 293, 334
SmoI	CTYRAG	3 cut(s)	237, 293, 334
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	4 cut(s)	404, 670, 1035, 1059
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	2 cut(s)	401, 719
TaqI	TCGA	5 cut(s)	71, 272, 294, 335, 622
TatI	WGTACW	1 cut(s)	730
TfiI	GAWTC	3 cut(s)	224, 361, 577
Tru1I	TTAA	3 cut(s)	567, 708, 1082
Tru9I	TTAA	3 cut(s)	567, 708, 1082
TscAI	CASTG	2 cut(s)	71, 474
TseI	GCWGC	5 cut(s)	301, 349, 410, 413, 926
TspDTI	ATGAA	5 cut(s)	19, 696, 725, 893, 990
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	71, 474
Van91I	CCANNNNNTGG	2 cut(s)	557, 1042
XapI	RAATTY	4 cut(s)	274, 374, 475, 788
XhoI	CTCGAG	2 cut(s)	293, 334
XmnI	GAANNNNTTC	2 cut(s)	652, 896
XspI	CTAG	1 cut(s)	870
Zsp2I	ATGCAT	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.