MD01G1177600.v1.1

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0006864
Physical Location & Seq
Forward (+)
27817923 .. 27820923
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1177600.v1.1.491

Sequence Viewer

Length: 870 bp
ATGCTGCCGAGATGGAGCAGAGCTGTTGCTCAGCTCTCGAGGTTGGGTACGCAGCAGAACCTGAATCTCAGAAACGAATTCTATGTTGTTTCGCGCCAAAGCTATGCCAGGGCTGCTGCGGTGGCTCCGGATACGGCTTTTACAGTGGAAAAACCTCTCCCTGCCGAGCCAGTGGTAAATTTGGACAAACTGTTTTGGTCTAAGCCCTCCTCATTGGCTTTGGCCCCGGACTCCCCATTGAGAATTGATGAGCCACAATATGGGAGGTTCAGGCGTGCGATTCTTACGATGTTGCTGTTTTATAGCAAACAAAGCAAGTCTATTCGAGGGGCCAATGTTGTGTATAAGCGAATTGTTTCACAAGTTGATAAACCGGGCATATATGAAGTATTCAATTTGGAGAAAACCTTTAAGACAACATTCTCTCTACTTGTACTTCATATGTGGCTTTGCTTACGCCGGTTGAAAGAAGAGGGAAAGGATGGTGTTGAATTCGGGCAATATATGTATGAGATTTACAATCATGATGTGGAACTTAGAGTATCTAAGGCTGGGGTCAACTTACTACTGTCTAGATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCCGTGCTTCCAGAGGCTAAACTGGATGATCTCCAAAATGTGATATGGAGGAATGTCTTTTCCGACGATGGTTCATCACAACCAACTGGAGATGCATCACGAGCAGTCCAGGCAATGGCAAGATACATTCGCCGGGAACTTTGTTGCCTGTCCTTAACAGATAAAGAAGCTATGTTTTCTGGTAATTTCATGTTTACTCCACTGAAGGGCGAGAAAATGAAACCGGAGGCCTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

290

Amino Acids

33.06

Weight (kDa)

9.35

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 130 - 274 5.1e-36 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 260, 745
AccII CGCG 1 cut(s) 94
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 1 cut(s) 119
AcsI RAATTY 3 cut(s) 77, 178, 491
AcuI CTGAAG 1 cut(s) 854
AfaI GTAC 2 cut(s) 49, 435
AfiI CCNNNNNNNGG 3 cut(s) 260, 745, 836
AgsI TTSAA 3 cut(s) 394, 466, 491
AjnI CCWGG 2 cut(s) 107, 738
AluBI AGCT 4 cut(s) 23, 34, 102, 800
AluI AGCT 4 cut(s) 23, 34, 102, 800
AlwNI CAGNNNCTG 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 37
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 3 cut(s) 222, 330, 858
ApeKI GCWGC 5 cut(s) 4, 52, 113, 116, 629
ApoI RAATTY 3 cut(s) 77, 178, 491
Asp700I GAANNNNTTC 2 cut(s) 355, 599
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 223, 330
AsuC2I CCSGG 3 cut(s) 227, 375, 764
AvaI CYCGRG 1 cut(s) 37
BauI CACGAG 1 cut(s) 729
BbvI GCAGC 4 cut(s) 64, 100, 103, 616
BccI CCATC 4 cut(s) 6, 476, 570, 692
BceAI ACGGC 2 cut(s) 150, 617
BciT130I CCWGG 2 cut(s) 109, 740
BciVI GTATCC 1 cut(s) 124
BcnI CCSGG 3 cut(s) 227, 375, 764
BfaI CTAG 1 cut(s) 573
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 5 cut(s) 5, 53, 114, 117, 630
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 5 cut(s) 6, 54, 115, 118, 631
Bme1390I CCNGG 5 cut(s) 109, 227, 375, 740, 764
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 223, 330
BmiI GGNNCC 3 cut(s) 126, 225, 331
BmrFI CCNGG 5 cut(s) 109, 227, 375, 740, 764
BmsI GCATC 3 cut(s) 616, 712, 734
BpmI CTGGAG 1 cut(s) 738
Bpu1102I GCTNAGC 1 cut(s) 30
BpuMI CCSGG 3 cut(s) 227, 375, 764
BsaJI CCNNGG 2 cut(s) 108, 225
BsaWI WCCGGW 2 cut(s) 127, 853
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 745, 836
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 3 cut(s) 170, 657, 721
Bse3DI GCAATG 1 cut(s) 750
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 2 cut(s) 109, 740
BseDI CCNNGG 2 cut(s) 108, 225
BseGI GGATG 3 cut(s) 487, 585, 661
BseLI CCNNNNNNNGG 3 cut(s) 260, 745, 836
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 2 cut(s) 44, 82
BseNI ACTGG 3 cut(s) 170, 657, 721
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 4 cut(s) 64, 100, 103, 616
BseYI CCCAGC 1 cut(s) 551
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 224, 332, 860
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 6 cut(s) 128, 227, 374, 460, 763, 854
BslI CCNNNNNNNGG 3 cut(s) 260, 745, 836
BsnI GGCC 3 cut(s) 224, 332, 860
BsoBI CYCGRG 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 127
Bsp143I GATC 1 cut(s) 658
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 119
BspANI GGCC 3 cut(s) 224, 332, 860
BspCNI CTCAG 2 cut(s) 43, 81
BspEI TCCGGA 1 cut(s) 127
BspFNI CGCG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 3 cut(s) 126, 225, 331
BsrDI GCAATG 1 cut(s) 750
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 3 cut(s) 170, 657, 721
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 108, 225
BssMI GATC 1 cut(s) 658
BssSI CACGAG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 729
Bst2UI CCWGG 2 cut(s) 109, 740
Bst4CI ACNGT 3 cut(s) 145, 192, 570
Bst6I CTCTTC 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 5 cut(s) 30, 68, 201, 536, 546
BstF5I GGATG 3 cut(s) 487, 585, 661
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 661
BstMBI GATC 1 cut(s) 658
BstMWI GCNNNNNNNGC 6 cut(s) 113, 122, 312, 626, 731, 740
BstNI CCWGG 2 cut(s) 109, 740
BstSCI CCNGG 5 cut(s) 107, 225, 373, 738, 762
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 4 cut(s) 64, 100, 103, 616
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 3 cut(s) 224, 332, 860
BtsCI GGATG 3 cut(s) 487, 585, 661
BtsIMutI CAGTG 3 cut(s) 150, 177, 830
Cac8I GCNNGC 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 61
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 2 cut(s) 223, 330
Csp6I GTAC 2 cut(s) 48, 434
CviAII CATG 2 cut(s) 524, 820
CviQI GTAC 2 cut(s) 48, 434
DdeI CTNAG 5 cut(s) 30, 68, 201, 536, 546
DpnI GATC 1 cut(s) 660
DpnII GATC 1 cut(s) 658
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 854
Eco88I CYCGRG 1 cut(s) 37
EcoRI GAATTC 2 cut(s) 77, 491
EcoRII CCWGG 2 cut(s) 107, 738
EcoT22I ATGCAT 1 cut(s) 727
FaeI CATG 2 cut(s) 527, 823
FatI CATG 2 cut(s) 523, 819
FauNDI CATATG 1 cut(s) 441
Fnu4HI GCNGC 5 cut(s) 5, 53, 114, 117, 630
FokI GGATG 3 cut(s) 494, 592, 668
Fsp4HI GCNGC 5 cut(s) 5, 53, 114, 117, 630
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 95
GluI GCNGC 5 cut(s) 5, 53, 114, 117, 630
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 3 cut(s) 224, 332, 860
HapII CCGG 6 cut(s) 128, 227, 374, 460, 763, 854
HhaI GCGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 527, 823
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 3 cut(s) 64, 230, 280
HpaII CCGG 6 cut(s) 128, 227, 374, 460, 763, 854
Hpy166II GTNNAC 2 cut(s) 559, 825
Hpy188I TCNGA 2 cut(s) 71, 694
Hpy188III TCNNGA 6 cut(s) 37, 128, 524, 573, 641, 729
Hpy8I GTNNAC 2 cut(s) 559, 825
Hpy99I CGWCG 1 cut(s) 698
HpyAV CCTTC 2 cut(s) 577, 829
HpyCH4III ACNGT 3 cut(s) 145, 192, 570
HpyCH4V TGCA 1 cut(s) 725
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 122, 312, 626, 731, 740
HpyF3I CTNAG 5 cut(s) 30, 68, 201, 536, 546
Hsp92II CATG 2 cut(s) 527, 823
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 127
Kzo9I GATC 1 cut(s) 658
LmnI GCTCC 2 cut(s) 15, 130
Lsp1109I GCAGC 4 cut(s) 64, 100, 103, 616
LweI GCATC 3 cut(s) 616, 712, 734
MaeI CTAG 1 cut(s) 573
MalI GATC 1 cut(s) 660
MboI GATC 1 cut(s) 658
MboII GAAGA 2 cut(s) 482, 607
MluCI AATT 7 cut(s) 77, 178, 243, 351, 394, 491, 814
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 717
Mph1103I ATGCAT 1 cut(s) 727
MroI TCCGGA 1 cut(s) 127
MroXI GAANNNNTTC 2 cut(s) 355, 599
MseI TTAA 2 cut(s) 411, 785
MspI CCGG 6 cut(s) 128, 227, 374, 460, 763, 854
MspR9I CCNGG 5 cut(s) 109, 227, 375, 740, 764
MvaI CCWGG 2 cut(s) 109, 740
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 6 cut(s) 113, 122, 312, 626, 731, 740
NciI CCSGG 3 cut(s) 227, 375, 764
NdeI CATATG 1 cut(s) 441
NdeII GATC 1 cut(s) 658
NlaIII CATG 2 cut(s) 527, 823
NlaIV GGNNCC 3 cut(s) 126, 225, 331
NmeAIII GCCGAG 2 cut(s) 33, 190
NsiI ATGCAT 1 cut(s) 727
PaeR7I CTCGAG 1 cut(s) 37
PagI TCATGA 1 cut(s) 523
PceI AGGCCT 1 cut(s) 860
PdmI GAANNNNTTC 2 cut(s) 355, 599
PfeI GAWTC 2 cut(s) 64, 280
PflMI CCANNNNNTGG 2 cut(s) 260, 745
PkrI GCNGC 5 cut(s) 6, 54, 115, 118, 631
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 107, 738
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 2 cut(s) 107, 738
PspN4I GGNNCC 3 cut(s) 126, 225, 331
PspPI GGNCC 2 cut(s) 223, 330
PstNI CAGNNNCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 49, 435
RsaNI GTAC 2 cut(s) 48, 434
SaqAI TTAA 2 cut(s) 411, 785
SatI GCNGC 5 cut(s) 5, 53, 114, 117, 630
Sau3AI GATC 1 cut(s) 658
Sau96I GGNCC 2 cut(s) 223, 330
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 5 cut(s) 109, 227, 375, 740, 764
SetI ASST 9 cut(s) 25, 36, 44, 63, 104, 157, 269, 410, 802
SfaNI GCATC 3 cut(s) 616, 712, 734
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 7 cut(s) 77, 178, 243, 351, 394, 491, 814
SseBI AGGCCT 1 cut(s) 860
SsiI CCGC 1 cut(s) 119
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 573
StuI AGGCCT 1 cut(s) 860
StyD4I CCNGG 5 cut(s) 107, 225, 373, 738, 762
TaaI ACNGT 3 cut(s) 145, 192, 570
TaqI TCGA 2 cut(s) 38, 325
TasI AATT 7 cut(s) 77, 178, 243, 351, 394, 491, 814
TatI WGTACW 1 cut(s) 433
TfiI GAWTC 2 cut(s) 64, 280
Tru1I TTAA 2 cut(s) 411, 785
Tru9I TTAA 2 cut(s) 411, 785
TscAI CASTG 3 cut(s) 150, 177, 837
TseI GCWGC 5 cut(s) 4, 52, 113, 116, 629
TspDTI ATGAA 6 cut(s) 399, 428, 596, 693, 808, 863
TspRI CASTG 3 cut(s) 150, 177, 837
Van91I CCANNNNNTGG 2 cut(s) 260, 745
XapI RAATTY 3 cut(s) 77, 178, 491
XbaI TCTAGA 1 cut(s) 572
XhoI CTCGAG 1 cut(s) 37
XmnI GAANNNNTTC 2 cut(s) 355, 599
XspI CTAG 1 cut(s) 573
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.