Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006864

Physical Location & Seq

Genomic Coordinates Forward (+)

27609553 .. 27615238

Gene Structure 5686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G273100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCTGTTCCTGCCGTTAGATTTACCACGCGCCGTCCATCCTTTTCTGAGGTTTTTGGGCCATGAAGCCGTCCATCATTTTCTGAGCTGCGTTTGCTGGATTTACGAACGGGGTTCCTCAGTCCTGCGTTTACTACTCAGCGAGAAGGTAAAGGCAAAGCATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGCGTTTACTACTCTGCGAGAAGGTAAAGGGAACTTAAAAATGTTGCCAAGATGGAGCAGAGCTGTTACTCACTTCTCAAGGCTGGGTTCACAGTATAACTTGAATCTCAGAAATGAATTTTATGTTATTTCTCGCCAAAGCTATGGCAGGGCTGCTGCAGCTGTGGCTCCAGATAAAGCTATTACTGTGGAAAAACTTCTCCCGAGTGAGTCAATGGTAAATCTGGACAAACTGTTTTGGTCTAAGCCATGCTCATTGGCTTTGGCCCCGGACTCCCCATTAAGAATTGAGGAGCCACAATATGCGGGATTTAAACGTGCAATCCTTAGGCTGATGCTGTTTTATAGCAAACAAAGCACGTCCATTCGAGGAGCAAATGTGGTATATAAGCGAATCATTTCACAAGTTGATAAACCTGCCATTTATGAAGTATTCAACTTGGAGAAAACCTTTAAGACAACATTCTCTCTACTTGTACTTCATATGTGGCTTTGCTTACGCCGGTTGAAAGAAGACGGAAAGGAAGGGGTTGAATTCGGGCAATACATATATGAGACTTACAATCACGATGTGGAACTTAGAGTATCTAAGGCTGGGGTCAACTTATTACTGACTAAATGGATGAAGGATTTGGAGAAGATATTCTATGGGAATATTGTTGCTTATGATGCTGCCGTGCTTCCGGAGGCTAGGCAGAATGAGCTGCAAAATGTGATTTGGAGGAATGTCTTTTCTGATGATGGTTCATCACAACCAAATGGTGATGCATCACGAGCAGTCCAGGCAATGGCAAGATATATTCGCCGGGAAGTTAGTTGCCTGTCCTTGACAGATAAAGAAGCTGTGTTCTCTGGTAATTTCATGTTTACTTCATTGAAGGGCGAGAAACCAAAATCAGAGGCATCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ubiq_cyt_C_chap

Protein Analysis

370

Amino Acids

42.04

Weight (kDa)

9.49

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51220 AT5G51220 AT5G51220
fragaria_vesca	FvH4_7g27000 FvH4_7g27000 FvH4_7g27000 FvH4_7g27000
malus_domestica	MD01G1177600.v1.1 MD07G1249400.v1.1
prunus_persica	Prupe.2G273100_v2.0.a1 Prupe.2G273100_v2.0.a1 Prupe.2G273100_v2.0.a1
pyrus_communis	pycom07g22270
rosa_chinensis	RchiOBHm_Chr1g0373791
rosa_laevigata	RLG00000026805
rosa_multiflora	Rmu_co8123160.1_g000001 Rmu_sc0013735.1_g000008 Rmu_sc0015585.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284000
rosa_rugosa	Rorug01G0379500 Rorug01G0379500
rosa_samantha	Rh1AG388800 Rh1BG353000 Rh1CG366000 Rh1DG383700
rosa_wichuraiana	Rw1G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	622
AccB7I	CCANNNNNTGG	1 cut(s)	985
AccII	CGCG	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	1 cut(s)	503
AcsI	RAATTY	2 cut(s)	314, 731
AdeI	CACNNNGTG	1 cut(s)	769
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	1 cut(s)	985
AgsI	TTSAA	5 cut(s)	301, 634, 706, 731, 1075
AjiI	CACGTC	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	978
AluBI	AGCT	7 cut(s)	87, 260, 339, 359, 377, 901, 1040
AluI	AGCT	7 cut(s)	87, 260, 339, 359, 377, 901, 1040
Alw26I	GTCTC	1 cut(s)	746
Ama87I	CYCGRG	1 cut(s)	400
Aor13HI	TCCGGA	1 cut(s)	880
AoxI	GGCC	2 cut(s)	58, 462
ApeKI	GCWGC	6 cut(s)	87, 350, 353, 356, 869, 901
ApoI	RAATTY	2 cut(s)	314, 731
Asp700I	GAANNNNTTC	3 cut(s)	393, 595, 839
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	58, 463
AsuC2I	CCSGG	2 cut(s)	467, 1004
AsuHPI	GGTGA	1 cut(s)	971
AvaI	CYCGRG	1 cut(s)	400
AxyI	CCTNAGG	1 cut(s)	524
BauI	CACGAG	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	717
BbvI	GCAGC	6 cut(s)	74, 337, 340, 368, 856, 888
BccI	CCATC	4 cut(s)	45, 81, 243, 932
BceAI	ACGGC	3 cut(s)	17, 53, 857
BciT130I	CCWGG	1 cut(s)	980
BcnI	CCSGG	2 cut(s)	467, 1004
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	1 cut(s)	888
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	6 cut(s)	88, 351, 354, 357, 870, 902
BlsI	GCNGC	6 cut(s)	89, 352, 355, 358, 871, 903
Bme1390I	CCNGG	3 cut(s)	467, 980, 1004
BmeT110I	CYCGRG	1 cut(s)	400
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	58, 463
BmiI	GGNNCC	4 cut(s)	115, 366, 465, 492
BmrFI	CCNGG	3 cut(s)	467, 980, 1004
BmsI	GCATC	5 cut(s)	169, 522, 856, 952, 974
BpiI	GAAGAC	1 cut(s)	717
BpmI	CTGGAG	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	2 cut(s)	467, 1004
BsaJI	CCNNGG	1 cut(s)	465
BsaWI	WCCGGW	1 cut(s)	880
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	985
Bse118I	RCCGGY	1 cut(s)	699
Bse21I	CCTNAGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	990
BseAI	TCCGGA	1 cut(s)	880
BseBI	CCWGG	1 cut(s)	980
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	4 cut(s)	37, 160, 825, 1100
BseLI	CCNNNNNNNGG	1 cut(s)	985
BseMI	GCAATG	1 cut(s)	990
BseMII	CTCAG	5 cut(s)	38, 74, 132, 151, 319
BseRI	GAGGAG	2 cut(s)	503, 582
BseXI	GCAGC	6 cut(s)	74, 337, 340, 368, 856, 888
BseYI	CCCAGC	2 cut(s)	280, 791
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	60, 464
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	4 cut(s)	467, 700, 881, 1003
BslI	CCNNNNNNNGG	1 cut(s)	985
BsmAI	GTCTC	1 cut(s)	746
BsnI	GGCC	2 cut(s)	60, 464
BsoBI	CYCGRG	1 cut(s)	400
Bsp13I	TCCGGA	1 cut(s)	880
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	2 cut(s)	60, 464
BspCNI	CTCAG	5 cut(s)	39, 75, 131, 150, 318
BspEI	TCCGGA	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	4 cut(s)	115, 366, 465, 492
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	990
BsrFI	RCCGGY	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	699
BssECI	CCNNGG	1 cut(s)	465
BssSI	CACGAG	1 cut(s)	969
Bst2BI	CACGAG	1 cut(s)	969
Bst2UI	CCWGG	1 cut(s)	980
Bst4CI	ACNGT	3 cut(s)	291, 385, 432
BstDEI	CTNAG	9 cut(s)	47, 83, 118, 137, 305, 441, 524, 776, 786
BstF5I	GGATG	4 cut(s)	37, 160, 825, 1100
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	746
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 93, 356, 362, 552, 866, 898, 971, 980
BstNI	CCWGG	1 cut(s)	980
BstSCI	CCNGG	3 cut(s)	465, 978, 1002
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	6 cut(s)	74, 337, 340, 368, 856, 888
BstV2I	GAAGAC	1 cut(s)	717
BstXI	CCANNNNNNTGG	1 cut(s)	341
Bsu36I	CCTNAGG	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	60, 464
BtrI	CACGTC	1 cut(s)	558
BtsCI	GGATG	4 cut(s)	37, 160, 825, 1100
BveI	ACCTGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	699
Cfr13I	GGNCC	2 cut(s)	58, 463
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	3 cut(s)	62, 447, 1060
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	9 cut(s)	47, 83, 118, 137, 305, 441, 524, 776, 786
DraI	TTTAAA	1 cut(s)	511
DraIII	CACNNNGTG	1 cut(s)	769
Eco81I	CCTNAGG	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	978
EcoT22I	ATGCAT	1 cut(s)	967
FaeI	CATG	3 cut(s)	65, 450, 1063
FatI	CATG	3 cut(s)	61, 446, 1059
FauI	CCCGC	1 cut(s)	496
FauNDI	CATATG	1 cut(s)	681
Fnu4HI	GCNGC	6 cut(s)	88, 351, 354, 357, 870, 902
FokI	GGATG	4 cut(s)	24, 147, 832, 1087
Fsp4HI	GCNGC	6 cut(s)	88, 351, 354, 357, 870, 902
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	6 cut(s)	88, 351, 354, 357, 870, 902
GsaI	CCCAGC	2 cut(s)	284, 795
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	60, 464
HapII	CCGG	4 cut(s)	467, 700, 881, 1003
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	65, 450, 1063
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	4 cut(s)	301, 407, 470, 591
HpaII	CCGG	4 cut(s)	467, 700, 881, 1003
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	5 cut(s)	131, 204, 287, 799, 1065
Hpy188I	TCNGA	5 cut(s)	48, 84, 308, 934, 1096
Hpy188III	TCNNGA	6 cut(s)	368, 400, 422, 764, 881, 969
Hpy8I	GTNNAC	5 cut(s)	131, 204, 287, 799, 1065
HpyAV	CCTTC	5 cut(s)	139, 212, 716, 817, 1069
HpyCH4III	ACNGT	3 cut(s)	291, 385, 432
HpyCH4IV	ACGT	2 cut(s)	514, 557
HpyCH4V	TGCA	4 cut(s)	356, 518, 904, 965
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 93, 356, 362, 552, 866, 898, 971, 980
HpyF3I	CTNAG	9 cut(s)	47, 83, 118, 137, 305, 441, 524, 776, 786
HpySE526I	ACGT	2 cut(s)	514, 557
Hsp92II	CATG	3 cut(s)	65, 450, 1063
HspAI	GCGC	1 cut(s)	30
Kpn2I	TCCGGA	1 cut(s)	880
LmnI	GCTCC	4 cut(s)	252, 370, 490, 569
Lsp1109I	GCAGC	6 cut(s)	74, 337, 340, 368, 856, 888
LweI	GCATC	5 cut(s)	169, 522, 856, 952, 974
MaeI	CTAG	1 cut(s)	888
MaeII	ACGT	2 cut(s)	514, 557
MaeIII	GTNAC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	722, 847
MluCI	AATT	4 cut(s)	314, 483, 731, 1054
MlyI	GAGTC	2 cut(s)	416, 464
MnlI	CCTC	8 cut(s)	42, 127, 174, 481, 560, 877, 912, 1090
Mph1103I	ATGCAT	1 cut(s)	967
MroI	TCCGGA	1 cut(s)	880
MroXI	GAANNNNTTC	3 cut(s)	393, 595, 839
MseI	TTAA	4 cut(s)	233, 479, 510, 651
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	4 cut(s)	467, 700, 881, 1003
MspR9I	CCNGG	3 cut(s)	467, 980, 1004
MvaI	CCWGG	1 cut(s)	980
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	9 cut(s)	10, 93, 356, 362, 552, 866, 898, 971, 980
NciI	CCSGG	2 cut(s)	467, 1004
NdeI	CATATG	1 cut(s)	681
NlaIII	CATG	3 cut(s)	65, 450, 1063
NlaIV	GGNNCC	4 cut(s)	115, 366, 465, 492
NsiI	ATGCAT	1 cut(s)	967
PdmI	GAANNNNTTC	3 cut(s)	393, 595, 839
PfeI	GAWTC	2 cut(s)	301, 591
PflMI	CCANNNNNTGG	1 cut(s)	985
PkrI	GCNGC	6 cut(s)	89, 352, 355, 358, 871, 903
PleI	GAGTC	2 cut(s)	415, 464
PpsI	GAGTC	2 cut(s)	415, 464
Psp6I	CCWGG	1 cut(s)	978
PspFI	CCCAGC	2 cut(s)	280, 791
PspGI	CCWGG	1 cut(s)	978
PspN4I	GGNNCC	4 cut(s)	115, 366, 465, 492
PspPI	GGNCC	2 cut(s)	58, 463
PstI	CTGCAG	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
SaqAI	TTAA	4 cut(s)	233, 479, 510, 651
SatI	GCNGC	6 cut(s)	88, 351, 354, 357, 870, 902
Sau96I	GGNCC	2 cut(s)	58, 463
SchI	GAGTC	2 cut(s)	416, 464
ScrFI	CCNGG	3 cut(s)	467, 980, 1004
SfaNI	GCATC	5 cut(s)	169, 522, 856, 952, 974
SfcI	CTRYAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	4 cut(s)	314, 483, 731, 1054
SsiI	CCGC	1 cut(s)	503
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	1 cut(s)	888
StyD4I	CCNGG	3 cut(s)	465, 978, 1002
TaaI	ACNGT	3 cut(s)	291, 385, 432
TaiI	ACGT	2 cut(s)	517, 560
TaqI	TCGA	1 cut(s)	565
TasI	AATT	4 cut(s)	314, 483, 731, 1054
TatI	WGTACW	1 cut(s)	673
TfiI	GAWTC	2 cut(s)	301, 591
Tru1I	TTAA	4 cut(s)	233, 479, 510, 651
Tru9I	TTAA	4 cut(s)	233, 479, 510, 651
TseI	GCWGC	6 cut(s)	87, 350, 353, 356, 869, 901
TspDTI	ATGAA	8 cut(s)	78, 327, 639, 668, 836, 933, 1048, 1059
TspGWI	ACGGA	1 cut(s)	729
Van91I	CCANNNNNTGG	1 cut(s)	985
XapI	RAATTY	2 cut(s)	314, 731
XmnI	GAANNNNTTC	3 cut(s)	393, 595, 839
XspI	CTAG	1 cut(s)	888
Zsp2I	ATGCAT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.