FvH4_7g27000

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006864
Physical Location & Seq
Forward (+)
20273426 .. 20276626
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27000.t4

Sequence Viewer

Length: 819 bp
ATGCTGCCGAGGTTGAGCAGAGCTCTCCCTCAGCTCTCGCGGCTGGGCTCACAGCGCGGCCTGAATCACCGTAACGATTTCTATGCTATTTCGCGCCAAAGCTACGCCAAGGCAGCTGTAGCTCCGGTCGATACTCCGAGCGAGCCAGCGGTGAATTTGGACAAGCTGTTTTGGTCCAAGCCGTGCTCGTTGGCTCTGCCTCCGGAGTCGCCGTTGAGGATTGAGGAGCCGCAGTATGGGGGAATCAAGCGTGTGCTGTTTACACTCATGCTGTTCTACACCAAACAAAGCAAGTCCATTCGAGGGGCGAATGTGGTGTATAAGAGAGTCCTATCGCAGGCTGATAAACCGGCCATATACGAAGTGTTTAACTTGGAGAGAACTTTTAAGACGAATTATGCTTTGCTTGTACTTCATATGTGGCTTTGTTTACGCCGGTTGAGACAAGAGGGCAAAGAAGGTGTTGAGCTCGGGCAATATGTGTATGAGACTTACAATCACGATGTGGAACTTAGAGTATCTAAGGCTGGGGTCAACTTGCTATTGAGTAAATGGATGAAAGATTTGGAGAGGATATTCTATGGAAACATTGTTGCTTATGATGCTGCACTGCTTCCAGAGGCAAGGCAGGATGAGCTGCCAAATGTCATATGGAGGAATGTCTTTTCTGATGATGGTTCATCAAGGCCAGATGAGGCTGCATCAAGAACTGTCCAGGCAATGGCAAGATATGTTCGCCGGGAAGTTAGTTGCCTGTCCTTAACAGATAAAGAAGCTATGTTTACTGGCAATTTCATGTTTACTCTACTAAAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

273

Amino Acids

31.21

Weight (kDa)

9.42

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 155 - 298 3.3e-36 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 721
AccII CGCG 3 cut(s) 40, 57, 94
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 4 cut(s) 40, 57, 149, 230
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 1 cut(s) 154
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 4 cut(s) 236, 303, 337, 721
AjnI CCWGG 1 cut(s) 714
AluBI AGCT 9 cut(s) 23, 34, 102, 116, 122, 166, 469, 637, 776
AluI AGCT 9 cut(s) 23, 34, 102, 116, 122, 166, 469, 637, 776
Alw21I GWGCWC 3 cut(s) 25, 188, 471
Alw26I GTCTC 2 cut(s) 436, 482
Ama87I CYCGRG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 3 cut(s) 58, 351, 686
ApeKI GCWGC 5 cut(s) 4, 113, 605, 637, 698
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 2 cut(s) 57, 96
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 740
AsuHPI GGTGA 2 cut(s) 59, 163
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 1 cut(s) 174
BanII GRGCYC 3 cut(s) 25, 50, 471
Bbv12I GWGCWC 3 cut(s) 25, 188, 471
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 4 cut(s) 125, 592, 624, 685
BccI CCATC 1 cut(s) 668
BceAI ACGGC 2 cut(s) 166, 196
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 716
BcnI CCSGG 1 cut(s) 740
BcoDI GTCTC 2 cut(s) 436, 482
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 8 cut(s) 5, 41, 58, 114, 230, 606, 638, 699
BlsI GCNGC 8 cut(s) 6, 42, 59, 115, 231, 607, 639, 700
Bme1390I CCNGG 2 cut(s) 716, 740
Bme18I GGWCC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 716, 740
BmsI GCATC 2 cut(s) 592, 710
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bpu10I CCTNAGC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 740
BsaJI CCNNGG 2 cut(s) 8, 108
BsaWI WCCGGW 2 cut(s) 124, 202
BsaXI ACNNNNNCTCC 4 cut(s) 197, 218, 227, 248
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 303, 337, 721
Bse118I RCCGGY 2 cut(s) 349, 435
Bse1I ACTGG 1 cut(s) 790
Bse3DI GCAATG 1 cut(s) 726
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 1 cut(s) 716
BseDI CCNNGG 2 cut(s) 8, 108
BseGI GGATG 2 cut(s) 561, 637
BseLI CCNNNNNNNGG 4 cut(s) 236, 303, 337, 721
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 790
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 4 cut(s) 125, 592, 624, 685
BseYI CCCAGC 2 cut(s) 43, 527
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 3 cut(s) 40, 57, 94
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 60, 353, 688
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 3 cut(s) 25, 188, 471
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 5 cut(s) 125, 203, 350, 436, 739
BslI CCNNNNNNNGG 4 cut(s) 236, 303, 337, 721
BsmAI GTCTC 2 cut(s) 436, 482
BsnI GGCC 3 cut(s) 60, 353, 688
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 4 cut(s) 25, 50, 188, 471
Bsp13I TCCGGA 1 cut(s) 202
BspACI CCGC 4 cut(s) 40, 57, 149, 230
BspANI GGCC 3 cut(s) 60, 353, 688
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 202
BspFNI CGCG 3 cut(s) 40, 57, 94
BspLI GGNNCC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 726
BsrFI RCCGGY 2 cut(s) 349, 435
BsrI ACTGG 1 cut(s) 790
BssAI RCCGGY 2 cut(s) 349, 435
BssECI CCNNGG 2 cut(s) 8, 108
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 2 cut(s) 71, 712
BstC8I GCNNGC 3 cut(s) 143, 147, 339
BstDEI CTNAG 3 cut(s) 30, 512, 522
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 561, 637
BstFNI CGCG 3 cut(s) 40, 57, 94
BstHHI GCGC 2 cut(s) 57, 96
BstMAI GTCTC 2 cut(s) 436, 482
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 6 cut(s) 40, 54, 113, 119, 602, 634
BstNI CCWGG 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 714, 738
BstSFI CTRYAG 1 cut(s) 117
BstUI CGCG 3 cut(s) 40, 57, 94
BstV1I GCAGC 4 cut(s) 125, 592, 624, 685
BsuRI GGCC 3 cut(s) 60, 353, 688
BtsCI GGATG 2 cut(s) 561, 637
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 1 cut(s) 608
Cac8I GCNNGC 3 cut(s) 143, 147, 339
CfoI GCGC 2 cut(s) 57, 96
Cfr10I RCCGGY 2 cut(s) 349, 435
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 410
CviAII CATG 2 cut(s) 268, 796
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 3 cut(s) 30, 512, 522
DraIII CACNNNGTG 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 351
Ecl136II GAGCTC 2 cut(s) 23, 469
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 3 cut(s) 25, 50, 471
Eco47I GGWCC 1 cut(s) 174
Eco53kI GAGCTC 2 cut(s) 23, 469
Eco88I CYCGRG 1 cut(s) 470
EcoICRI GAGCTC 2 cut(s) 23, 469
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 714
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 3 cut(s) 25, 50, 471
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 271, 799
FatI CATG 2 cut(s) 267, 795
FauNDI CATATG 2 cut(s) 417, 650
Fnu4HI GCNGC 8 cut(s) 5, 41, 58, 114, 230, 606, 638, 699
FokI GGATG 2 cut(s) 568, 644
FriOI GRGCYC 3 cut(s) 25, 50, 471
Fsp4HI GCNGC 8 cut(s) 5, 41, 58, 114, 230, 606, 638, 699
GlaI GCGC 2 cut(s) 56, 95
GluI GCNGC 8 cut(s) 5, 41, 58, 114, 230, 606, 638, 699
GsaI CCCAGC 2 cut(s) 47, 531
HaeIII GGCC 3 cut(s) 60, 353, 688
HapII CCGG 5 cut(s) 125, 203, 350, 436, 739
HhaI GCGC 2 cut(s) 57, 96
Hin1II CATG 2 cut(s) 271, 799
Hin6I GCGC 2 cut(s) 55, 94
HinP1I GCGC 2 cut(s) 55, 94
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 4 cut(s) 64, 206, 243, 327
HpaII CCGG 5 cut(s) 125, 203, 350, 436, 739
HphI GGTGA 2 cut(s) 59, 163
Hpy166II GTNNAC 5 cut(s) 261, 431, 535, 783, 801
Hpy188I TCNGA 2 cut(s) 138, 670
Hpy188III TCNNGA 4 cut(s) 203, 500, 617, 705
Hpy8I GTNNAC 5 cut(s) 261, 431, 535, 783, 801
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 2 cut(s) 71, 712
HpyCH4V TGCA 2 cut(s) 608, 701
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 54, 113, 119, 602, 634
HpyF3I CTNAG 3 cut(s) 30, 512, 522
Hsp92II CATG 2 cut(s) 271, 799
HspAI GCGC 2 cut(s) 55, 94
Kpn2I TCCGGA 1 cut(s) 202
LmnI GCTCC 2 cut(s) 127, 226
Lsp1109I GCAGC 4 cut(s) 125, 592, 624, 685
LweI GCATC 2 cut(s) 592, 710
MaeIII GTNAC 1 cut(s) 71
MhlI GDGCHC 4 cut(s) 25, 50, 188, 471
MluCI AATT 3 cut(s) 154, 394, 790
MlyI GAGTC 2 cut(s) 215, 336
MroI TCCGGA 1 cut(s) 202
MseI TTAA 3 cut(s) 369, 387, 761
MspA1I CMGCKG 2 cut(s) 116, 149
MspI CCGG 5 cut(s) 125, 203, 350, 436, 739
MspR9I CCNGG 2 cut(s) 716, 740
MvaI CCWGG 1 cut(s) 716
MvnI CGCG 3 cut(s) 40, 57, 94
MwoI GCNNNNNNNGC 6 cut(s) 40, 54, 113, 119, 602, 634
NciI CCSGG 1 cut(s) 740
NdeI CATATG 2 cut(s) 417, 650
NlaIII CATG 2 cut(s) 271, 799
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 33
PfeI GAWTC 2 cut(s) 64, 243
PflMI CCANNNNNTGG 1 cut(s) 721
PkrI GCNGC 8 cut(s) 6, 42, 59, 115, 231, 607, 639, 700
PleI GAGTC 2 cut(s) 214, 335
PpsI GAGTC 2 cut(s) 214, 335
Psp124BI GAGCTC 2 cut(s) 25, 471
Psp6I CCWGG 1 cut(s) 714
PspFI CCCAGC 2 cut(s) 43, 527
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SacI GAGCTC 2 cut(s) 25, 471
SaqAI TTAA 3 cut(s) 369, 387, 761
SatI GCNGC 8 cut(s) 5, 41, 58, 114, 230, 606, 638, 699
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 2 cut(s) 215, 336
ScrFI CCNGG 2 cut(s) 716, 740
SduI GDGCHC 4 cut(s) 25, 50, 188, 471
SfaNI GCATC 2 cut(s) 592, 710
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 174
Sse9I AATT 3 cut(s) 154, 394, 790
SsiI CCGC 4 cut(s) 40, 57, 149, 230
SstI GAGCTC 2 cut(s) 25, 471
StyD4I CCNGG 2 cut(s) 714, 738
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 71, 712
TaqI TCGA 2 cut(s) 129, 301
TasI AATT 3 cut(s) 154, 394, 790
TatI WGTACW 1 cut(s) 409
TauI GCSGC 3 cut(s) 43, 60, 232
TfiI GAWTC 2 cut(s) 64, 243
Tru1I TTAA 3 cut(s) 369, 387, 761
Tru9I TTAA 3 cut(s) 369, 387, 761
TscAI CASTG 1 cut(s) 615
TseI GCWGC 5 cut(s) 4, 113, 605, 637, 698
TspDTI ATGAA 4 cut(s) 404, 572, 669, 784
TspRI CASTG 1 cut(s) 615
Van91I CCANNNNNTGG 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 174
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.