Rh1DG383700

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006864
Physical Location & Seq
Forward (+)
60433691 .. 60437585
3895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG383700.1

Sequence Viewer

Length: 921 bp
ATGACGCCTCCGGTGACTGCCGAGGCACGAAACTGCGTCGGTTTACTCTCAGAAATGCTGCCGAGGTGGAGCAGAGCTCTCACTCAGCTCTCGCGGATGGGCTCGCAGCGTGGCCTGAACCACGGAAACGATTTCTATGCTATGTCGCGCCAAAGCTACGCCAAGGCAGCTGTGGCTCCGGTTTTGGCTGATACTCTGGAAAAAGGCCTTCCCACCGAGCCAGTGGTGAATTTGGACAAGCTGTTTTGGTCTAAGCCTTGCTCGTTGGCTTTGCCTCCGGAGTCGCCGTTGAGGATTGATGAGCCGGAGTATGAGGGCATTAAGCGTGTGTTTCTTAAGCTGATGCTGTTTTACAGCAAGCAAAGCAAGTCGATTCGGGGGGCGAATGTGGTGTATAAGAGAGTCGTTTCCCAAGTTGATAAACCGGCCATATACGAAGTGTTCAACTTGGAGAAAACTTTTAAGACGACGTATGCTTTACTTGTACTTCATATGTGGCTTTGCTTACGCCGGTTGAAACAAGAGGGAAAACAAGGTGTTGAGTTCGGGCAATATGTGTATGAGATTTACAACCATGATGTGGAACTTAGAGTCTCTAAGGCTGGGGTCAACTTGCTACTGAGTAAATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCTGTGCTTCCAGAGGCAAGGCTGGATGATCTGCCAAATGTCATATGGAGGAATGTCTTTTCTGATGATGGTTCATCAAAGCCAGATGAGGCTGCATCACGAACCGTCCAGGCAATGGCAAGATATGTTCGCCGGGAAGTTAGTTGCCTGTCCTTAACAGATAAAGAAGCTATGTTTTCCGGCAATTTCATGTTTACTCCACTAAAAATCGAGAAAGCAAAATTGGAGGGGTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

306

Amino Acids

34.79

Weight (kDa)

9.17

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 147 - 291 1.6e-35 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 580, 796
AccII CGCG 2 cut(s) 94, 148
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 229
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 486
AfiI CCNNNNNNNGG 2 cut(s) 580, 796
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 445, 517
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
AluBI AGCT 7 cut(s) 77, 88, 156, 170, 241, 340, 851
AluI AGCT 7 cut(s) 77, 88, 156, 170, 241, 340, 851
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 598
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 3 cut(s) 112, 205, 426
ApeKI GCWGC 5 cut(s) 58, 106, 167, 680, 773
ApoI RAATTY 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 912
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 2 cut(s) 25, 238
AvaII GGWCC 1 cut(s) 912
BanII GRGCYC 2 cut(s) 79, 104
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 5 cut(s) 45, 118, 179, 667, 760
BccI CCATC 2 cut(s) 91, 743
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 1 cut(s) 791
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 1 cut(s) 598
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 5 cut(s) 59, 107, 168, 681, 774
BlsI GCNGC 5 cut(s) 60, 108, 169, 682, 775
Bme1390I CCNGG 2 cut(s) 791, 815
Bme18I GGWCC 1 cut(s) 912
BmgT120I GGNCC 1 cut(s) 912
BmiI GGNNCC 2 cut(s) 177, 913
BmrFI CCNGG 2 cut(s) 791, 815
BmsI GCATC 3 cut(s) 333, 667, 785
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BpuMI CCSGG 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 21, 62, 121, 162
BsaWI WCCGGW 3 cut(s) 10, 178, 277
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 580, 796
Bse118I RCCGGY 2 cut(s) 424, 510
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 801
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 4 cut(s) 21, 62, 121, 162
BseGI GGATG 3 cut(s) 102, 636, 712
BseLI CCNNNNNNNGG 2 cut(s) 580, 796
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 3 cut(s) 63, 98, 611
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 5 cut(s) 45, 118, 179, 667, 760
BseYI CCCAGC 1 cut(s) 602
Bsh1236I CGCG 2 cut(s) 94, 148
BshFI GGCC 3 cut(s) 114, 207, 428
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 8 cut(s) 11, 179, 278, 305, 425, 511, 814, 861
BslI CCNNNNNNNGG 2 cut(s) 580, 796
BsmAI GTCTC 1 cut(s) 598
BsnI GGCC 3 cut(s) 114, 207, 428
Bsp1286I GDGCHC 2 cut(s) 79, 104
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 1 cut(s) 709
BspACI CCGC 1 cut(s) 94
BspANI GGCC 3 cut(s) 114, 207, 428
BspCNI CTCAG 3 cut(s) 62, 97, 612
BspEI TCCGGA 1 cut(s) 277
BspFNI CGCG 2 cut(s) 94, 148
BspLI GGNNCC 2 cut(s) 177, 913
BspTI CTTAAG 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 801
BsrFI RCCGGY 2 cut(s) 424, 510
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 2 cut(s) 424, 510
BssECI CCNNGG 4 cut(s) 21, 62, 121, 162
BssMI GATC 1 cut(s) 709
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 1 cut(s) 787
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 104, 359
BstDEI CTNAG 6 cut(s) 49, 84, 252, 587, 597, 620
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 102, 636, 712
BstFNI CGCG 2 cut(s) 94, 148
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 712
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 1 cut(s) 709
BstMWI GCNNNNNNNGC 4 cut(s) 167, 173, 363, 677
BstNI CCWGG 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 789, 813
BstUI CGCG 2 cut(s) 94, 148
BstV1I GCAGC 5 cut(s) 45, 118, 179, 667, 760
BsuRI GGCC 3 cut(s) 114, 207, 428
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 102, 636, 712
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 104, 359
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 2 cut(s) 424, 510
Cfr13I GGNCC 1 cut(s) 912
CseI GACGC 2 cut(s) 13, 25
Csp6I GTAC 1 cut(s) 485
CviAII CATG 2 cut(s) 575, 871
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 6 cut(s) 49, 84, 252, 587, 597, 620
DpnI GATC 1 cut(s) 711
DpnII GATC 1 cut(s) 709
EaeI YGGCCR 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 79, 104
Eco47I GGWCC 1 cut(s) 912
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 789
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 2 cut(s) 79, 104
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 578, 874
FatI CATG 2 cut(s) 574, 870
FauNDI CATATG 2 cut(s) 492, 725
Fnu4HI GCNGC 5 cut(s) 59, 107, 168, 681, 774
FokI GGATG 3 cut(s) 109, 643, 719
FriOI GRGCYC 2 cut(s) 79, 104
Fsp4HI GCNGC 5 cut(s) 59, 107, 168, 681, 774
GlaI GCGC 1 cut(s) 149
GluI GCNGC 5 cut(s) 59, 107, 168, 681, 774
GsaI CCCAGC 1 cut(s) 606
HaeIII GGCC 3 cut(s) 114, 207, 428
HapII CCGG 8 cut(s) 11, 179, 278, 305, 425, 511, 814, 861
HgaI GACGC 2 cut(s) 13, 25
HhaI GCGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 578, 874
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 4 cut(s) 281, 373, 402, 591
HpaII CCGG 8 cut(s) 11, 179, 278, 305, 425, 511, 814, 861
HphI GGTGA 2 cut(s) 25, 238
Hpy166II GTNNAC 3 cut(s) 44, 610, 876
Hpy188I TCNGA 2 cut(s) 52, 745
Hpy188III TCNNGA 6 cut(s) 197, 278, 692, 780, 892, 915
Hpy8I GTNNAC 3 cut(s) 44, 610, 876
Hpy99I CGWCG 2 cut(s) 41, 472
HpyAV CCTTC 2 cut(s) 218, 628
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 1 cut(s) 776
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 173, 363, 677
HpyF3I CTNAG 6 cut(s) 49, 84, 252, 587, 597, 620
HpySE526I ACGT 1 cut(s) 470
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 578, 874
HspAI GCGC 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 277
Kzo9I GATC 1 cut(s) 709
LmnI GCTCC 2 cut(s) 69, 181
Lsp1109I GCAGC 5 cut(s) 45, 118, 179, 667, 760
LweI GCATC 3 cut(s) 333, 667, 785
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 711
MboI GATC 1 cut(s) 709
MboII GAAGA 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 79, 104
MluCI AATT 3 cut(s) 229, 865, 902
MlyI GAGTC 3 cut(s) 290, 411, 600
MroI TCCGGA 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 4 cut(s) 321, 336, 462, 836
MspA1I CMGCKG 1 cut(s) 170
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 8 cut(s) 11, 179, 278, 305, 425, 511, 814, 861
MspR9I CCNGG 2 cut(s) 791, 815
MvaI CCWGG 1 cut(s) 791
MvnI CGCG 2 cut(s) 94, 148
MwoI GCNNNNNNNGC 4 cut(s) 167, 173, 363, 677
NciI CCSGG 1 cut(s) 815
NdeI CATATG 2 cut(s) 492, 725
NdeII GATC 1 cut(s) 709
NlaIII CATG 2 cut(s) 578, 874
NlaIV GGNNCC 2 cut(s) 177, 913
NmeAIII GCCGAG 2 cut(s) 46, 87
NmuCI GTSAC 1 cut(s) 13
PceI AGGCCT 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 373
PflMI CCANNNNNTGG 2 cut(s) 580, 796
PkrI GCNGC 5 cut(s) 60, 108, 169, 682, 775
PleI GAGTC 3 cut(s) 289, 410, 599
PpsI GAGTC 3 cut(s) 289, 410, 599
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 789
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 2 cut(s) 177, 913
PspPI GGNCC 1 cut(s) 912
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 4 cut(s) 321, 336, 462, 836
SatI GCNGC 5 cut(s) 59, 107, 168, 681, 774
Sau3AI GATC 1 cut(s) 709
Sau96I GGNCC 1 cut(s) 912
SchI GAGTC 3 cut(s) 290, 411, 600
ScrFI CCNGG 2 cut(s) 791, 815
SduI GDGCHC 2 cut(s) 79, 104
SfaNI GCATC 3 cut(s) 333, 667, 785
SinI GGWCC 1 cut(s) 912
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 3 cut(s) 229, 865, 902
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 664
SstI GAGCTC 1 cut(s) 79
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 789, 813
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 1 cut(s) 473
TaqI TCGA 2 cut(s) 371, 891
TasI AATT 3 cut(s) 229, 865, 902
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 4 cut(s) 321, 336, 462, 836
Tru9I TTAA 4 cut(s) 321, 336, 462, 836
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 5 cut(s) 58, 106, 167, 680, 773
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 479, 647, 744, 859
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 228
Van91I CCANNNNNTGG 2 cut(s) 580, 796
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 912
XapI RAATTY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 3 cut(s) 169, 220, 723
XmnI GAANNNNTTC 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.