Rh1BG353000

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006864
Physical Location & Seq
Forward (+)
48512603 .. 48515935
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG353000.1

Sequence Viewer

Length: 816 bp
ATGCTGCCGAGGTGGAGCAGAGCTCTCACTCAGCTCTCGCGGCTGGGCTCGCAGCGTGGCCTGAACCACGGAAACGATTTCTATGCTATTTCGCGCCAAAGCTACGCCAAGGCAGCTGTGGCTCCGGCTATGGCTGATACTCTGGAAAAAGGCCTTCCCACCGAGCCAGTGGTGAATTTGGACAAGTTGTTTTGGTCTAAGCCTTGCTCGTTGGCTTTGCCTCCGGAGTCACCGTTGAGGATTGATGAGCCAGAGTATGAAGGCATTAAGCGTGTGTTTCTTAAGCTCATGCTATTTTATAGCAAGCAAAGCAAGTCTATTCGAGGGGCGAATGTGGTGTATAAGAGAGTAGTTTCTCAAGTTGATAAACCGGCCATATACGAAGTGTTTAACTTGGAGAAAACTTTTAAGACAACATATGCTTTGCTTGTACTTCATATGTGGCTTTGCTTACGCCGGTTGAAACAAGAGGGAAAGGAAGGTGTTGAGTTCGGGCAATATGTGTATGAGATTTACAATCATGATGTGGAACTTAGAGTCTCTAAGGCTGGGGTCAACTTGCTACTGAGTAAATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCTGTGCTTCCAGAGGCAAGGCTGGATGATCTGCCAAATGTCATATGGAGGAATGTCTTTTCTGATGATGGTTCATCAAAGCCAGATGAGGCTGCATCACGAACTGTCCAGGCAATGGCAAGATATGTTCGCCGGGAAGTTAGTTGCCTGTCCTTAACAGGTATAATTATTTTACATTTCCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

271

Amino Acids

30.97

Weight (kDa)

9.07

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 129 - 260 1.1e-32 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 742
AccII CGCG 2 cut(s) 40, 94
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 175
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 742
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 463
AjnI CCWGG 1 cut(s) 735
AluBI AGCT 5 cut(s) 23, 34, 102, 116, 286
AluI AGCT 5 cut(s) 23, 34, 102, 116, 286
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 58, 151, 372
ApeKI GCWGC 5 cut(s) 4, 52, 113, 626, 719
ApoI RAATTY 1 cut(s) 175
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 2 cut(s) 184, 222
BanII GRGCYC 2 cut(s) 25, 50
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 4 cut(s) 64, 125, 613, 706
BccI CCATC 1 cut(s) 689
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 737
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 1 cut(s) 544
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
BlsI GCNGC 6 cut(s) 6, 42, 54, 115, 628, 721
Bme1390I CCNGG 2 cut(s) 737, 761
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 737, 761
BmsI GCATC 2 cut(s) 613, 731
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 761
BsaJI CCNNGG 3 cut(s) 8, 67, 108
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 742
Bse118I RCCGGY 2 cut(s) 370, 456
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 747
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 8, 67, 108
BseGI GGATG 2 cut(s) 582, 658
BseLI CCNNNNNNNGG 1 cut(s) 742
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 2 cut(s) 44, 557
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 4 cut(s) 64, 125, 613, 706
BseYI CCCAGC 2 cut(s) 43, 548
Bsh1236I CGCG 2 cut(s) 40, 94
BshFI GGCC 3 cut(s) 60, 153, 374
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 5 cut(s) 125, 224, 371, 457, 760
BslI CCNNNNNNNGG 1 cut(s) 742
BsmAI GTCTC 1 cut(s) 544
BsnI GGCC 3 cut(s) 60, 153, 374
Bsp1286I GDGCHC 2 cut(s) 25, 50
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 655
BspACI CCGC 1 cut(s) 40
BspANI GGCC 3 cut(s) 60, 153, 374
BspCNI CTCAG 2 cut(s) 43, 558
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 2 cut(s) 40, 94
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 747
BsrFI RCCGGY 2 cut(s) 370, 456
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 2 cut(s) 370, 456
BssECI CCNNGG 3 cut(s) 8, 67, 108
BssMI GATC 1 cut(s) 655
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 2 cut(s) 234, 733
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 50, 305
BstDEI CTNAG 5 cut(s) 30, 198, 533, 543, 566
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 582, 658
BstFNI CGCG 2 cut(s) 40, 94
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 2 cut(s) 735, 759
BstUI CGCG 2 cut(s) 40, 94
BstV1I GCAGC 4 cut(s) 64, 125, 613, 706
BsuRI GGCC 3 cut(s) 60, 153, 374
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 582, 658
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 50, 305
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 370, 456
Csp6I GTAC 1 cut(s) 431
CviAII CATG 2 cut(s) 289, 521
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 5 cut(s) 30, 198, 533, 543, 566
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 25, 50
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 25, 50
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 292, 524
FatI CATG 2 cut(s) 288, 520
FauNDI CATATG 3 cut(s) 418, 438, 671
Fnu4HI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
FokI GGATG 2 cut(s) 589, 665
FriOI GRGCYC 2 cut(s) 25, 50
Fsp4HI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
GlaI GCGC 1 cut(s) 95
GluI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
GsaI CCCAGC 2 cut(s) 47, 552
HaeIII GGCC 3 cut(s) 60, 153, 374
HapII CCGG 5 cut(s) 125, 224, 371, 457, 760
HhaI GCGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 292, 524
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 2 cut(s) 227, 537
HpaII CCGG 5 cut(s) 125, 224, 371, 457, 760
HphI GGTGA 2 cut(s) 184, 222
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 1 cut(s) 691
Hpy188III TCNNGA 5 cut(s) 143, 224, 521, 638, 726
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 4 cut(s) 164, 254, 473, 574
HpyCH4III ACNGT 2 cut(s) 234, 733
HpyCH4V TGCA 1 cut(s) 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
HpyF3I CTNAG 5 cut(s) 30, 198, 533, 543, 566
Hsp92II CATG 2 cut(s) 292, 524
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 2 cut(s) 15, 127
Lsp1109I GCAGC 4 cut(s) 64, 125, 613, 706
LweI GCATC 2 cut(s) 613, 731
MaeIII GTNAC 1 cut(s) 228
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 1 cut(s) 604
MhlI GDGCHC 2 cut(s) 25, 50
MluCI AATT 2 cut(s) 175, 792
MlyI GAGTC 2 cut(s) 236, 546
MnlI CCTC 8 cut(s) 3, 231, 231, 317, 463, 634, 669, 709
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 5 cut(s) 267, 282, 390, 408, 782
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 5 cut(s) 125, 224, 371, 457, 760
MspR9I CCNGG 2 cut(s) 737, 761
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 2 cut(s) 40, 94
MwoI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
NciI CCSGG 1 cut(s) 761
NdeI CATATG 3 cut(s) 418, 438, 671
NdeII GATC 1 cut(s) 655
NlaIII CATG 2 cut(s) 292, 524
NlaIV GGNNCC 1 cut(s) 123
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 228
PagI TCATGA 1 cut(s) 520
PceI AGGCCT 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 6 cut(s) 6, 42, 54, 115, 628, 721
PleI GAGTC 2 cut(s) 235, 545
PpsI GAGTC 2 cut(s) 235, 545
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 2 cut(s) 43, 548
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 5 cut(s) 267, 282, 390, 408, 782
SatI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
Sau3AI GATC 1 cut(s) 655
SchI GAGTC 2 cut(s) 236, 546
ScrFI CCNGG 2 cut(s) 737, 761
SduI GDGCHC 2 cut(s) 25, 50
SetI ASST 8 cut(s) 14, 25, 36, 104, 118, 288, 484, 790
SfaNI GCATC 2 cut(s) 613, 731
SmlI CTYRAG 2 cut(s) 281, 357
SmoI CTYRAG 2 cut(s) 281, 357
Sse9I AATT 2 cut(s) 175, 792
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 610
SstI GAGCTC 1 cut(s) 25
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 735, 759
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 234, 733
TaqI TCGA 1 cut(s) 322
TasI AATT 2 cut(s) 175, 792
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 5 cut(s) 267, 282, 390, 408, 782
Tru9I TTAA 5 cut(s) 267, 282, 390, 408, 782
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 5 cut(s) 4, 52, 113, 626, 719
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 4 cut(s) 273, 425, 593, 690
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 742
Vha464I CTTAAG 1 cut(s) 281
XapI RAATTY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 3 cut(s) 115, 166, 669
XmnI GAANNNNTTC 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.