Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015585.1

Orthogroup ID

OG0006864

Physical Location & Seq

Genomic Coordinates Forward (+)

6712 .. 7558

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015585.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgctgccgaggtggagcagagctctcactcagctctcgcggatgggctcgcagcgtggcctgaaccacggaaacgatttctatgctatttcgcgccaaagctacgccaaggcagctgtggctccggttatggctgatactctggaaaaaggcctccccaccgagccagtggtgaatttggacaagctgttttggtctaagccttgctcgttggctttgcctccggagtcgccgttgaggattgatgagccggagtatgagggcattaagcgtgtgtttcttaagctgatgctgttttacagcaagcaaagcaagtcgattcggggggcgaatgtggtgtacaagagagtcgtttcccaagttgataaaccggccatatacgaagtgttcaacttggagaaaacttttaagacgacgtatgctttgcttgtacttcatatgtggctttgcttacgccggttgaaacaagagggaaaagaaggtgttgagttcgggcaatatgtgtatgagatttacaaccatgatgtggaacttagagtctctaaggctggggtatgtgattcttatacgttaagctctttgaacttgaatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ubiq_cyt_C_chap

Protein Analysis

198

Amino Acids

22.63

Weight (kDa)

9.26

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51220 AT5G51220 AT5G51220
fragaria_vesca	FvH4_7g27000 FvH4_7g27000 FvH4_7g27000 FvH4_7g27000
malus_domestica	MD01G1177600.v1.1 MD07G1249400.v1.1
prunus_persica	Prupe.2G273100_v2.0.a1 Prupe.2G273100_v2.0.a1 Prupe.2G273100_v2.0.a1
pyrus_communis	pycom07g22270
rosa_chinensis	RchiOBHm_Chr1g0373791
rosa_laevigata	RLG00000026805
rosa_multiflora	Rmu_co8123160.1_g000001 Rmu_sc0013735.1_g000008 Rmu_sc0015585.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284000
rosa_rugosa	Rorug01G0379500 Rorug01G0379500
rosa_samantha	Rh1AG388800 Rh1BG353000 Rh1CG366000 Rh1DG383700
rosa_wichuraiana	Rw1G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccII	CGCG	2 cut(s)	40, 94
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	2 cut(s)	341, 432
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	391, 463, 583, 589
AluBI	AGCT	7 cut(s)	23, 34, 102, 116, 187, 286, 576
AluI	AGCT	7 cut(s)	23, 34, 102, 116, 187, 286, 576
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	544
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	3 cut(s)	58, 151, 372
ApeKI	GCWGC	3 cut(s)	4, 52, 113
ApoI	RAATTY	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	25, 50
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	64, 125
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BcoDI	GTCTC	1 cut(s)	544
BfrI	CTTAAG	1 cut(s)	281
BisI	GCNGC	3 cut(s)	5, 53, 114
BlsI	GCNGC	3 cut(s)	6, 54, 115
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BsaJI	CCNNGG	3 cut(s)	8, 67, 108
BsaWI	WCCGGW	2 cut(s)	124, 223
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	2 cut(s)	370, 456
Bse1I	ACTGG	1 cut(s)	167
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	3 cut(s)	8, 67, 108
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	64, 125
BseYI	CCCAGC	1 cut(s)	548
Bsh1236I	CGCG	2 cut(s)	40, 94
BshFI	GGCC	3 cut(s)	60, 153, 374
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	5 cut(s)	125, 224, 251, 371, 457
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	3 cut(s)	60, 153, 374
Bsp1286I	GDGCHC	2 cut(s)	25, 50
Bsp13I	TCCGGA	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	339
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	3 cut(s)	60, 153, 374
BspCNI	CTCAG	1 cut(s)	43
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	2 cut(s)	40, 94
BspLI	GGNNCC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	281
BsrFI	RCCGGY	2 cut(s)	370, 456
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	167
BssAI	RCCGGY	2 cut(s)	370, 456
BssECI	CCNNGG	3 cut(s)	8, 67, 108
BssT1I	CCWWGG	1 cut(s)	108
BstAFI	CTTAAG	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	50, 305
BstDEI	CTNAG	4 cut(s)	30, 198, 533, 543
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	2 cut(s)	40, 94
BstHHI	GCGC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 119, 309
BstUI	CGCG	2 cut(s)	40, 94
BstV1I	GCAGC	2 cut(s)	64, 125
BsuRI	GGCC	3 cut(s)	60, 153, 374
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	50, 305
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	2 cut(s)	370, 456
Csp6I	GTAC	2 cut(s)	340, 431
CviAII	CATG	1 cut(s)	521
CviQI	GTAC	2 cut(s)	340, 431
DdeI	CTNAG	4 cut(s)	30, 198, 533, 543
EaeI	YGGCCR	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	25, 50
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	25, 50
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	524
FatI	CATG	1 cut(s)	520
FauNDI	CATATG	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	5, 53, 114
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	2 cut(s)	25, 50
Fsp4HI	GCNGC	3 cut(s)	5, 53, 114
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	5, 53, 114
GsaI	CCCAGC	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	60, 153, 374
HapII	CCGG	5 cut(s)	125, 224, 251, 371, 457
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	5 cut(s)	227, 319, 348, 537, 560
HpaII	CCGG	5 cut(s)	125, 224, 251, 371, 457
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188III	TCNNGA	2 cut(s)	143, 224
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	473
HpyCH4IV	ACGT	2 cut(s)	416, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 119, 309
HpyF3I	CTNAG	4 cut(s)	30, 198, 533, 543
HpySE526I	ACGT	2 cut(s)	416, 569
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	1 cut(s)	94
Kpn2I	TCCGGA	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	15, 127
LpnPI	CCDG	9 cut(s)	74, 128, 138, 180, 237, 264, 384, 470, 534
Lsp1109I	GCAGC	2 cut(s)	64, 125
LweI	GCATC	1 cut(s)	279
MaeII	ACGT	2 cut(s)	416, 569
MhlI	GDGCHC	2 cut(s)	25, 50
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	3 cut(s)	236, 357, 546
MnlI	CCTC	6 cut(s)	3, 164, 231, 231, 253, 463
MroI	TCCGGA	1 cut(s)	223
MseI	TTAA	5 cut(s)	267, 282, 408, 572, 595
MspA1I	CMGCKG	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	5 cut(s)	125, 224, 251, 371, 457
Mva1269I	GAATGC	1 cut(s)	595
MvnI	CGCG	2 cut(s)	40, 94
MwoI	GCNNNNNNNGC	3 cut(s)	113, 119, 309
NdeI	CATATG	1 cut(s)	438
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	1 cut(s)	123
NmeAIII	GCCGAG	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	153
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	2 cut(s)	319, 560
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	3 cut(s)	6, 54, 115
PleI	GAGTC	3 cut(s)	235, 356, 545
PpsI	GAGTC	3 cut(s)	235, 356, 545
Psp124BI	GAGCTC	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	123
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	341, 432
RsaNI	GTAC	2 cut(s)	340, 431
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	5 cut(s)	267, 282, 408, 572, 595
SatI	GCNGC	3 cut(s)	5, 53, 114
SchI	GAGTC	3 cut(s)	236, 357, 546
SduI	GDGCHC	2 cut(s)	25, 50
SfaNI	GCATC	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	175
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	40
SstI	GAGCTC	1 cut(s)	25
StuI	AGGCCT	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	2 cut(s)	419, 572
TaqI	TCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	175
TatI	WGTACW	2 cut(s)	339, 430
TfiI	GAWTC	2 cut(s)	319, 560
Tru1I	TTAA	5 cut(s)	267, 282, 408, 572, 595
Tru9I	TTAA	5 cut(s)	267, 282, 408, 572, 595
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	3 cut(s)	4, 52, 113
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	526
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	2 cut(s)	115, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.