Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014242

Physical Location & Seq

Genomic Coordinates Reverse (-)

21090956 .. 21092410

Gene Structure 1455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCATTCTCGAAGGGACTCATTTTTGCGATGATATTTGCGGTTTTAGCGATAGTTAAGCCCTCAGAAGCTGCTCTTGATGCTCATTACTATGATCAATCGTGCCCTGCTGCTGAAAAAATCATACTTGAAACTGTTAGGAATGCTACTTTGTATGATCCCAAAGTGCCTGCTCGTCTCCTAAGAATGTTCTTCCACGATTGCTTCATCAGGGGATGTGATGCGTCCATTCTACTAGATTCGACACGGTCAAACCAAGCTGAGAAGGATGGTCCTCCAAACATCTCAGTACGGTCATTTTACGTGATCGAAGATGCTAAGAGAAAGCTCGAAAAGGCTTGTCCTCGTACCGTGTCTTGTGCCGATGTAATCGCCATTGCCGCCAGAGATGTGGTCACCCTGTCCGGTGGTCCTTATTGGAGCGTACTGAAAGGGCGAAAAGACGGGACAATTTCACGAGCCAACGAGACTAGAAATCTCCCACCACCAACGTTCAATGTTTCTCAACTGATACAAAGCTTTGCAGCAAGAGGCTTGTCGGTGAAAGACATGGTTACGCTCTCAGGTGGCCACACCATAGGGTTCTCTCACTGTTCTTCTTTCGAGTCCCGTCTTCAAAACTTCAGCAAATTCCATGACATAGATCCTTCGATGAACTATGCGTTCGCGCAAACCTTGAAAAAGAAATGCCCGAGAACATCTAACCGAGGCAAGAACGCAGGGACAGTCTTGGACTCTACTTCCTCGGTTTTCGACAATGTTTACTACAAGCAAATTTTGTCCGGGAAAGGAGTGTTTGGGTCTGATCAGGCACTTCTAGGCGATTCCCGGACTAAGTGGATCGTTGAGACGTTTGCTCAAGACCAAAAAGCTTTCTTCAGAGAGTTTGCAGCTTCCATGGTAAAACTTGGAAACTTTGGAGTCAAAGAGACTGGACAAGTTAGAGTTAACACTCGCTTCGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

322

Amino Acids

35.56

Weight (kDa)

9.39

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 288	1.3e-83	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51890
fragaria_vesca	FvH4_7g28760
malus_domestica	MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica	Prupe.2G287900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376321
rosa_laevigata	RLG00000026612
rosa_multiflora	Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282210
rosa_rugosa	Rorug01G0395600
rosa_samantha	Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana	Rw1G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	668
AciI	CCGC	2 cut(s)	41, 381
AclI	AACGTT	1 cut(s)	491
AclWI	GGATC	3 cut(s)	152, 638, 848
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	2 cut(s)	629, 774
AcuI	CTGAAG	2 cut(s)	607, 862
AfaI	GTAC	3 cut(s)	291, 349, 426
AgsI	TTSAA	4 cut(s)	131, 496, 617, 679
AluBI	AGCT	6 cut(s)	71, 260, 328, 519, 872, 893
AluI	AGCT	6 cut(s)	71, 260, 328, 519, 872, 893
Alw26I	GTCTC	4 cut(s)	182, 461, 842, 923
AlwI	GGATC	3 cut(s)	152, 638, 848
AlwNI	CAGNNNCTG	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	691
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	4 cut(s)	71, 110, 524, 890
ApoI	RAATTY	2 cut(s)	629, 774
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	2 cut(s)	272, 410
AsuC2I	CCSGG	2 cut(s)	784, 829
AsuHPI	GGTGA	2 cut(s)	388, 553
AvaI	CYCGRG	1 cut(s)	691
AvaII	GGWCC	2 cut(s)	272, 410
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	570
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	605
BbvI	GCAGC	4 cut(s)	58, 97, 536, 902
BccI	CCATC	1 cut(s)	263
BclI	TGATCA	2 cut(s)	94, 805
BcnI	CCSGG	2 cut(s)	784, 829
BcoDI	GTCTC	4 cut(s)	182, 461, 842, 923
BfaI	CTAG	3 cut(s)	236, 471, 818
BisI	GCNGC	5 cut(s)	72, 111, 381, 525, 891
BlsI	GCNGC	5 cut(s)	73, 112, 382, 526, 892
Bme1390I	CCNGG	2 cut(s)	784, 829
Bme18I	GGWCC	2 cut(s)	272, 410
BmeT110I	CYCGRG	1 cut(s)	691
BmgT120I	GGNCC	2 cut(s)	272, 410
BmrFI	CCNGG	2 cut(s)	784, 829
BmsI	GCATC	3 cut(s)	70, 211, 304
BpiI	GAAGAC	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	843
BpuMI	CCSGG	2 cut(s)	784, 829
BsaAI	YACGTR	1 cut(s)	304
BsaJI	CCNNGG	3 cut(s)	706, 744, 897
BsaWI	WCCGGW	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	937
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	706, 744, 897
BseGI	GGATG	2 cut(s)	221, 274
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	4 cut(s)	78, 252, 300, 576
BseNI	ACTGG	1 cut(s)	937
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	4 cut(s)	58, 97, 536, 902
Bsh1236I	CGCG	1 cut(s)	668
BshFI	GGCC	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	691
BsiSI	CCGG	3 cut(s)	405, 783, 829
BslFI	GGGAC	4 cut(s)	30, 460, 592, 736
BsmAI	GTCTC	4 cut(s)	182, 461, 842, 923
BsmBI	CGTCTC	2 cut(s)	182, 842
BsmFI	GGGAC	4 cut(s)	30, 460, 592, 736
BsmI	GAATGC	2 cut(s)	5, 148
BsnI	GGCC	1 cut(s)	570
BsoBI	CYCGRG	1 cut(s)	691
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	6 cut(s)	94, 157, 306, 643, 805, 840
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	2 cut(s)	41, 381
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	4 cut(s)	77, 253, 299, 575
BspFNI	CGCG	1 cut(s)	668
BspPI	GGATC	3 cut(s)	152, 638, 848
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	937
BssECI	CCNNGG	3 cut(s)	706, 744, 897
BssMI	GATC	6 cut(s)	94, 157, 306, 643, 805, 840
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	897
Bst2BI	CACGAG	1 cut(s)	456
Bst4CI	ACNGT	6 cut(s)	136, 249, 294, 352, 593, 727
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	7 cut(s)	64, 182, 261, 286, 318, 562, 834
BstDSI	CCRYGG	1 cut(s)	897
BstEII	GGTNACC	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	221, 274
BstFNI	CGCG	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	6 cut(s)	97, 160, 309, 646, 808, 843
BstMAI	GTCTC	4 cut(s)	182, 461, 842, 923
BstMBI	GATC	6 cut(s)	94, 157, 306, 643, 805, 840
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 80, 380
BstPI	GGTNACC	1 cut(s)	394
BstSCI	CCNGG	2 cut(s)	782, 827
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	4 cut(s)	58, 97, 536, 902
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	643
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	897
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	221, 274
BtsIMutI	CAGTG	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	272, 410
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	3 cut(s)	290, 348, 425
CviAII	CATG	3 cut(s)	550, 635, 898
CviQI	GTAC	3 cut(s)	290, 348, 425
DdeI	CTNAG	7 cut(s)	64, 182, 261, 286, 318, 562, 834
DpnI	GATC	6 cut(s)	96, 159, 308, 645, 807, 842
DpnII	GATC	6 cut(s)	94, 157, 306, 643, 805, 840
EaeI	YGGCCR	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	897
Eco47I	GGWCC	2 cut(s)	272, 410
Eco57I	CTGAAG	2 cut(s)	607, 862
Eco88I	CYCGRG	1 cut(s)	691
Eco91I	GGTNACC	1 cut(s)	394
EcoO65I	GGTNACC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	897
Esp3I	CGTCTC	2 cut(s)	182, 842
FaeI	CATG	3 cut(s)	553, 638, 901
FaiI	YATR	9 cut(s)	93, 125, 156, 551, 578, 636, 641, 660, 899
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	4 cut(s)	30, 460, 592, 736
FatI	CATG	3 cut(s)	549, 634, 897
FbaI	TGATCA	2 cut(s)	94, 805
Fnu4HI	GCNGC	5 cut(s)	72, 111, 381, 525, 891
FokI	GGATG	2 cut(s)	228, 281
Fsp4HI	GCNGC	5 cut(s)	72, 111, 381, 525, 891
FspBI	CTAG	3 cut(s)	236, 471, 818
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	5 cut(s)	72, 111, 381, 525, 891
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	3 cut(s)	405, 783, 829
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	3 cut(s)	553, 638, 901
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HincII	GTYRAC	2 cut(s)	949, 964
HindII	GTYRAC	2 cut(s)	949, 964
HindIII	AAGCTT	2 cut(s)	517, 870
HinfI	GANTC	6 cut(s)	18, 239, 605, 734, 824, 921
HpaI	GTTAAC	1 cut(s)	949
HpaII	CCGG	3 cut(s)	405, 783, 829
HphI	GGTGA	2 cut(s)	388, 553
Hpy166II	GTNNAC	3 cut(s)	763, 949, 964
Hpy188I	TCNGA	3 cut(s)	67, 805, 881
Hpy188III	TCNNGA	4 cut(s)	10, 77, 456, 860
Hpy8I	GTNNAC	3 cut(s)	763, 949, 964
HpyAV	CCTTC	3 cut(s)	7, 259, 657
HpyCH4III	ACNGT	6 cut(s)	136, 249, 294, 352, 593, 727
HpyCH4IV	ACGT	3 cut(s)	303, 491, 851
HpyCH4V	TGCA	2 cut(s)	524, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 80, 380
HpyF3I	CTNAG	7 cut(s)	64, 182, 261, 286, 318, 562, 834
HpySE526I	ACGT	3 cut(s)	303, 491, 851
Hsp92II	CATG	3 cut(s)	553, 638, 901
HspAI	GCGC	1 cut(s)	668
Ksp22I	TGATCA	2 cut(s)	94, 805
KspAI	GTTAAC	1 cut(s)	949
Kzo9I	GATC	6 cut(s)	94, 157, 306, 643, 805, 840
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	4 cut(s)	58, 97, 536, 902
LweI	GCATC	3 cut(s)	70, 211, 304
MaeI	CTAG	3 cut(s)	236, 471, 818
MaeII	ACGT	3 cut(s)	303, 491, 851
MaeIII	GTNAC	2 cut(s)	394, 553
MalI	GATC	6 cut(s)	96, 159, 308, 645, 807, 842
MboI	GATC	6 cut(s)	94, 157, 306, 643, 805, 840
MboII	GAAGA	5 cut(s)	184, 323, 588, 605, 868
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	3 cut(s)	450, 629, 774
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	4 cut(s)	12, 614, 728, 930
MnlI	CCTC	6 cut(s)	73, 285, 354, 524, 701, 754
Mox20I	TGGCCA	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	2 cut(s)	57, 948
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	570
MspI	CCGG	3 cut(s)	405, 783, 829
MspR9I	CCNGG	2 cut(s)	784, 829
Mva1269I	GAATGC	2 cut(s)	5, 148
MvnI	CGCG	1 cut(s)	668
MwoI	GCNNNNNNNGC	3 cut(s)	47, 80, 380
NciI	CCSGG	2 cut(s)	784, 829
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	6 cut(s)	94, 157, 306, 643, 805, 840
NlaIII	CATG	3 cut(s)	553, 638, 901
NmuCI	GTSAC	1 cut(s)	394
PctI	GAATGC	2 cut(s)	5, 148
PfeI	GAWTC	2 cut(s)	239, 824
PflFI	GACNNNGTC	1 cut(s)	247
PfoI	TCCNGGA	2 cut(s)	782, 827
PkrI	GCNGC	5 cut(s)	73, 112, 382, 526, 892
PleI	GAGTC	4 cut(s)	12, 613, 728, 929
PpsI	GAGTC	4 cut(s)	12, 613, 728, 929
Ppu21I	YACGTR	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	491
PspEI	GGTNACC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	272, 410
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	643
PsyI	GACNNNGTC	1 cut(s)	247
RsaI	GTAC	3 cut(s)	291, 349, 426
RsaNI	GTAC	3 cut(s)	290, 348, 425
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	57, 948
SatI	GCNGC	5 cut(s)	72, 111, 381, 525, 891
Sau3AI	GATC	6 cut(s)	94, 157, 306, 643, 805, 840
Sau96I	GGNCC	2 cut(s)	272, 410
SchI	GAGTC	4 cut(s)	12, 614, 728, 930
ScrFI	CCNGG	2 cut(s)	784, 829
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	3 cut(s)	70, 211, 304
SinI	GGWCC	2 cut(s)	272, 410
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	858
SmoI	CTYRAG	1 cut(s)	858
Sse9I	AATT	3 cut(s)	450, 629, 774
SsiI	CCGC	2 cut(s)	41, 381
SspMI	CTAG	3 cut(s)	236, 471, 818
StyD4I	CCNGG	2 cut(s)	782, 827
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	6 cut(s)	136, 249, 294, 352, 593, 727
TaiI	ACGT	3 cut(s)	306, 494, 854
TaqI	TCGA	7 cut(s)	11, 242, 309, 330, 603, 650, 753
TasI	AATT	3 cut(s)	450, 629, 774
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	239, 824
Tru1I	TTAA	2 cut(s)	57, 948
Tru9I	TTAA	2 cut(s)	57, 948
TscAI	CASTG	1 cut(s)	596
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	4 cut(s)	71, 110, 524, 890
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	196, 668
TspRI	CASTG	1 cut(s)	596
Tth111I	GACNNNGTC	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	272, 410
XapI	RAATTY	2 cut(s)	629, 774
XspI	CTAG	3 cut(s)	236, 471, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.