Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8151018.1

Orthogroup ID

OG0014242

Physical Location & Seq

Genomic Coordinates Reverse (-)

56 .. 514

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8151018.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ctgattcaaagctttgccaagagaggtttaggagtcaaagaattggtagctctatccggtggccatactctagggttttcgcattgttcttccttccaagcccgtcttcgcaattttagttcagtccacgatgtcgacccgactatggacagtgagtttgctctaaagctaagaaagcaatgccctaaaccaaacagagatcacggcgctggggagttgttggactcgacatcctcgatttttgataatgattattacaagagattgataggaggaaagggagtgtttggatcggaccaagcattgtttggtgattacaggactaaatggattgttgaatcgtatgccaaagatcaaagtttgttctttaaagagtttgcagcttctatggtgaaactaggtaatgttggggtgattgaggatggagaagtgagactgaattgcagagtggtaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

8.47

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51890
fragaria_vesca	FvH4_7g28760
malus_domestica	MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica	Prupe.2G287900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376321
rosa_laevigata	RLG00000026612
rosa_multiflora	Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282210
rosa_rugosa	Rorug01G0395600
rosa_samantha	Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana	Rw1G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	8, 338
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	4 cut(s)	12, 50, 169, 383
AluI	AGCT	4 cut(s)	12, 50, 169, 383
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	323, 403, 424
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	2 cut(s)	71, 398
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	185
BseGI	GGATG	2 cut(s)	230, 427
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	199, 290, 352
BspANI	GGCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	185
BssMI	GATC	3 cut(s)	199, 290, 352
Bst4CI	ACNGT	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	230, 427
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	202, 293, 355
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	199, 290, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	392
BstV2I	GAAGAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	230, 427
BtsIMutI	CAGTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	295
CviJI	RGCY	6 cut(s)	12, 50, 63, 101, 169, 383
CviKI_1	RGCY	6 cut(s)	12, 50, 63, 101, 169, 383
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	201, 292, 354
DpnII	GATC	3 cut(s)	199, 290, 352
DraI	TTTAAA	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	295
FaiI	YATR	4 cut(s)	66, 146, 345, 389
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	217, 434
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	2 cut(s)	71, 398
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	381
GsaI	CCCAGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	4 cut(s)	4, 33, 224, 338
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	3 cut(s)	323, 403, 424
Hpy166II	GTNNAC	3 cut(s)	127, 136, 454
Hpy188I	TCNGA	1 cut(s)	295
Hpy8I	GTNNAC	3 cut(s)	127, 136, 454
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	380, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	199, 290, 352
LpnPI	CCDG	3 cut(s)	70, 195, 304
Lsp1109I	GCAGC	1 cut(s)	392
MaeI	CTAG	2 cut(s)	71, 398
MalI	GATC	3 cut(s)	201, 292, 354
MboI	GATC	3 cut(s)	199, 290, 352
MboII	GAAGA	2 cut(s)	81, 98
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	3 cut(s)	41, 112, 439
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	42, 218
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	17, 244, 266, 412
Mox20I	TGGCCA	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	63
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeII	GATC	3 cut(s)	199, 290, 352
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	4, 338
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	41, 218
PpsI	GAGTC	2 cut(s)	41, 218
PspFI	CCCAGC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	295
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	3 cut(s)	199, 290, 352
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	2 cut(s)	42, 218
SetI	ASST	6 cut(s)	14, 28, 52, 171, 385, 403
SinI	GGWCC	1 cut(s)	295
Sse9I	AATT	3 cut(s)	41, 112, 439
SspMI	CTAG	2 cut(s)	71, 398
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	3 cut(s)	135, 227, 236
TasI	AATT	3 cut(s)	41, 112, 439
TfiI	GAWTC	2 cut(s)	4, 338
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	380
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	71, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.