Rorug01G0395600

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014242
Physical Location & Seq
Reverse (-)
50529910 .. 50530917
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0395600.1

Sequence Viewer

Length: 1008 bp
ATGGACGAAGACGACACATCCCCACCTCACCCTCTCCAACGCAACAACGACAACGAAACCGGTGCTGAAACCACCACCGCCGCAACCGCCACACCAACAACGAATACAACAGAAGCCAAAGACAACAGCAACAATCGAAAGTGCAAGGGCAAAGGTGGCCCGGACAACAACAAGTTCCGCTACCGCGGCGTGCGGCAGCGGAGCTGGGGCAAATGGGTGGCGGAGATCCGTGAGCCACGTAAGCGCACACGGAAGTGGCTCGGGACCTTCGCCACCGCCGAGGACGCCGCCAAAGCCTACGACCGAGCCGCTATCATCCTCTACGGCTCCAGGGCTCAGCTCAACCTCCAGCCTTCCGGTTCTTCCTCCTCTCAGTCCTCCACGCGCGGCTCTTCTTCCTCATCATCGTCTTCTTCTTCCAGCCAAACCCTAAGACCCCTGCTCCCTCGGCCCTCCGGCTACACAGGCTTCAACTGTAACTTCGCTTCCTCGGCCCATCCTTACGGATTTGTTCCCTACAATTCTGTTGGGGTTTACCCTAACTCGTCCGTACAGATGAGTAATCAGCTGGAAAATTTAAATCCACAGATCCAACAGCAAGTTGTGGTGCAGCAACAGCAGCAACAACAGTTTCATCATTATCCATTATCATCTGATGGTTGCGGTGACGTCATTAACACCACACCAACCTCGTACCCAAACCCTAGTGTCCATGCTCATCAGCAATACCAAGTACACCAGCAACAGGATTTGAATCAGAATCAGAATCAGAATCAGAGTTGTACTTCTTACGAGGATATGAACTCGATTGTTGGGTCCGCGGGTTCGAGTTTGTCTATGTCATCGCAGCCCATGGTGGTTGCACCGGCGGTTTCGGATCCGATGATGATGGCACAAGGCGGACCCATGTCGCCGATGTGGCCGCTGACGAACGAGGAAGAGTGTGCCCAGAGTCTGTGGGACTACTACGGTGATCCTTTCTTTTTGGATTTTAAAGGATTTGATTGA

Protein Analysis

335

Amino Acids

36.88

Weight (kDa)

5.98

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 60 - 109 4e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51890
fragaria_vesca FvH4_7g28760
malus_domestica MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica Prupe.2G287900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376321
rosa_laevigata RLG00000026612
rosa_multiflora Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii Rroxscaffold_4G00282210
rosa_rugosa Rorug01G0395600
rosa_samantha Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana Rw1G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 672
AccII CGCG 4 cut(s) 186, 385, 387, 821
AclWI GGATC 5 cut(s) 220, 583, 872, 885, 968
AcoI YGGCCR 1 cut(s) 920
AcsI RAATTY 1 cut(s) 574
AcyI GRCGYC 2 cut(s) 285, 669
AfaI GTAC 4 cut(s) 552, 695, 735, 784
AfiI CCNNNNNNNGG 1 cut(s) 745
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 472, 754
AjnI CCWGG 1 cut(s) 329
AleI CACNNNNGTG 1 cut(s) 253
AluBI AGCT 3 cut(s) 204, 340, 568
AluI AGCT 3 cut(s) 204, 340, 568
AlwI GGATC 5 cut(s) 220, 583, 872, 885, 968
AlwNI CAGNNNCTG 1 cut(s) 955
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 4 cut(s) 157, 449, 492, 920
ApeKI GCWGC 4 cut(s) 196, 610, 619, 847
ApoI RAATTY 1 cut(s) 574
AsiGI ACCGGT 1 cut(s) 59
AspLEI GCGC 2 cut(s) 246, 387
AspS9I GGNCC 6 cut(s) 158, 264, 450, 493, 816, 902
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 20, 677, 983
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 3 cut(s) 264, 816, 902
BaeGI GKGCMC 1 cut(s) 949
BamHI GGATCC 1 cut(s) 877
BanII GRGCYC 1 cut(s) 337
BarI GAAGNNNNNNTAC 2 cut(s) 469, 501
BbsI GAAGAC 2 cut(s) 15, 402
BbvI GCAGC 4 cut(s) 208, 622, 631, 859
BccI CCATC 3 cut(s) 504, 650, 883
BceAI ACGGC 1 cut(s) 340
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 331
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 1 cut(s) 705
BglI GCCNNNNNGGC 1 cut(s) 919
BlpI GCTNAGC 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 161, 331
Bme18I GGWCC 3 cut(s) 264, 816, 902
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 6 cut(s) 158, 264, 450, 493, 816, 902
BmiI GGNNCC 5 cut(s) 265, 328, 817, 879, 904
BmrFI CCNGG 2 cut(s) 161, 331
BoxI GACNNNNGTC 1 cut(s) 907
BpiI GAAGAC 2 cut(s) 15, 402
BpmI CTGGAG 2 cut(s) 313, 332
Bpu1102I GCTNAGC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 753
BsaHI GRCGYC 2 cut(s) 285, 669
BsaJI CCNNGG 7 cut(s) 184, 279, 330, 446, 489, 819, 852
BsaWI WCCGGW 2 cut(s) 59, 356
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse118I RCCGGY 2 cut(s) 59, 865
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 7 cut(s) 184, 279, 330, 446, 489, 819, 852
BseGI GGATG 3 cut(s) 17, 315, 496
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMII CTCAG 2 cut(s) 350, 386
BseRI GAGGAG 1 cut(s) 358
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 4 cut(s) 208, 622, 631, 859
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 4 cut(s) 186, 385, 387, 821
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 4 cut(s) 159, 451, 494, 922
BshTI ACCGGT 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 5 cut(s) 60, 161, 357, 456, 866
BslFI GGGAC 2 cut(s) 277, 974
BslI CCNNNNNNNGG 1 cut(s) 745
BsmFI GGGAC 2 cut(s) 277, 974
BsnI GGCC 4 cut(s) 159, 451, 494, 922
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 337, 949
Bsp143I GATC 4 cut(s) 225, 588, 877, 973
Bsp1720I GCTNAGC 1 cut(s) 336
Bsp19I CCATGG 1 cut(s) 852
BspANI GGCC 4 cut(s) 159, 451, 494, 922
BspCNI CTCAG 2 cut(s) 349, 385
BspFNI CGCG 4 cut(s) 186, 385, 387, 821
BspLI GGNNCC 5 cut(s) 265, 328, 817, 879, 904
BspPI GGATC 5 cut(s) 220, 583, 872, 885, 968
BspQI GCTCTTC 1 cut(s) 397
BsrFI RCCGGY 2 cut(s) 59, 865
BssAI RCCGGY 2 cut(s) 59, 865
BssECI CCNNGG 7 cut(s) 184, 279, 330, 446, 489, 819, 852
BssMI GATC 4 cut(s) 225, 588, 877, 973
BssNI GRCGYC 2 cut(s) 285, 669
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 3 cut(s) 476, 630, 971
Bst6I CTCTTC 2 cut(s) 397, 933
BstACI GRCGYC 2 cut(s) 285, 669
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 336, 372, 431
BstDSI CCRYGG 3 cut(s) 184, 819, 852
BstF5I GGATG 3 cut(s) 17, 315, 496
BstFNI CGCG 4 cut(s) 186, 385, 387, 821
BstHHI GCGC 2 cut(s) 246, 387
BstKTI GATC 4 cut(s) 228, 591, 880, 976
BstMBI GATC 4 cut(s) 225, 588, 877, 973
BstMCI CGRYCG 1 cut(s) 304
BstNI CCWGG 1 cut(s) 331
BstPAI GACNNNNGTC 1 cut(s) 907
BstSCI CCNGG 2 cut(s) 159, 329
BstSLI GKGCMC 1 cut(s) 949
BstUI CGCG 4 cut(s) 186, 385, 387, 821
BstV1I GCAGC 4 cut(s) 208, 622, 631, 859
BstV2I GAAGAC 2 cut(s) 15, 402
BstX2I RGATCY 3 cut(s) 225, 588, 877
BstYI RGATCY 3 cut(s) 225, 588, 877
BsuRI GGCC 4 cut(s) 159, 451, 494, 922
BtgI CCRYGG 3 cut(s) 184, 819, 852
BtgZI GCGATG 1 cut(s) 828
BtsCI GGATG 3 cut(s) 17, 315, 496
Cac8I GCNNGC 1 cut(s) 191
CaiI CAGNNNCTG 1 cut(s) 955
CfoI GCGC 2 cut(s) 246, 387
Cfr10I RCCGGY 2 cut(s) 59, 865
Cfr13I GGNCC 6 cut(s) 158, 264, 450, 493, 816, 902
Cfr42I CCGCGG 2 cut(s) 187, 822
CseI GACGC 1 cut(s) 293
Csp6I GTAC 4 cut(s) 551, 694, 734, 783
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 3 cut(s) 713, 853, 907
CviQI GTAC 4 cut(s) 551, 694, 734, 783
DdeI CTNAG 3 cut(s) 336, 372, 431
DpnI GATC 4 cut(s) 227, 590, 879, 975
DpnII GATC 4 cut(s) 225, 588, 877, 973
DraI TTTAAA 2 cut(s) 579, 994
EaeI YGGCCR 1 cut(s) 920
Eam1104I CTCTTC 2 cut(s) 397, 933
EarI CTCTTC 2 cut(s) 397, 933
EciI GGCGGA 2 cut(s) 236, 915
Eco130I CCWWGG 1 cut(s) 852
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 264, 816, 902
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 852
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 3 cut(s) 716, 856, 910
FaiI YATR 5 cut(s) 714, 800, 839, 854, 908
FaqI GGGAC 2 cut(s) 277, 974
FatI CATG 3 cut(s) 712, 852, 906
FauI CCCGC 1 cut(s) 814
FokI GGATG 3 cut(s) 4, 302, 483
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 1 cut(s) 705
GlaI GCGC 2 cut(s) 245, 386
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 2 cut(s) 313, 332
HaeIII GGCC 4 cut(s) 159, 451, 494, 922
HapII CCGG 5 cut(s) 60, 161, 357, 456, 866
HgaI GACGC 1 cut(s) 293
HhaI GCGC 2 cut(s) 246, 387
Hin1I GRCGYC 2 cut(s) 285, 669
Hin1II CATG 3 cut(s) 716, 856, 910
Hin6I GCGC 2 cut(s) 244, 385
HinP1I GCGC 2 cut(s) 244, 385
HinfI GANTC 5 cut(s) 754, 760, 766, 772, 952
HpaII CCGG 5 cut(s) 60, 161, 357, 456, 866
HphI GGTGA 3 cut(s) 20, 677, 983
Hpy166II GTNNAC 2 cut(s) 535, 736
Hpy188I TCNGA 7 cut(s) 655, 759, 765, 771, 777, 877, 882
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 2 cut(s) 535, 736
HpyAV CCTTC 2 cut(s) 277, 363
HpyCH4III ACNGT 3 cut(s) 476, 630, 971
HpyCH4IV ACGT 2 cut(s) 238, 669
HpyCH4V TGCA 3 cut(s) 144, 610, 863
HpyF3I CTNAG 3 cut(s) 336, 372, 431
HpySE526I ACGT 2 cut(s) 238, 669
Hsp92I GRCGYC 2 cut(s) 285, 669
Hsp92II CATG 3 cut(s) 716, 856, 910
HspAI GCGC 2 cut(s) 244, 385
KspI CCGCGG 2 cut(s) 187, 822
Kzo9I GATC 4 cut(s) 225, 588, 877, 973
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 3 cut(s) 201, 332, 447
Lsp1109I GCAGC 4 cut(s) 208, 622, 631, 859
MaeI CTAG 1 cut(s) 705
MaeII ACGT 2 cut(s) 238, 669
MaeIII GTNAC 2 cut(s) 476, 665
MalI GATC 4 cut(s) 227, 590, 879, 975
MboI GATC 4 cut(s) 225, 588, 877, 973
MboII GAAGA 8 cut(s) 20, 354, 384, 387, 402, 405, 408, 950
MflI RGATCY 3 cut(s) 225, 588, 877
MhlI GDGCHC 2 cut(s) 337, 949
MluCI AATT 2 cut(s) 520, 574
MlyI GAGTC 1 cut(s) 961
MmeI TCCRAC 2 cut(s) 61, 616
MseI TTAA 3 cut(s) 578, 675, 993
MslI CAYNNNNRTG 1 cut(s) 253
MspA1I CMGCKG 5 cut(s) 186, 199, 568, 821, 925
MspI CCGG 5 cut(s) 60, 161, 357, 456, 866
MspR9I CCNGG 2 cut(s) 161, 331
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 4 cut(s) 186, 385, 387, 821
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 852
NdeII GATC 4 cut(s) 225, 588, 877, 973
NlaIII CATG 3 cut(s) 716, 856, 910
NlaIV GGNNCC 5 cut(s) 265, 328, 817, 879, 904
NmeAIII GCCGAG 3 cut(s) 304, 427, 470
NmuCI GTSAC 1 cut(s) 665
OliI CACNNNNGTG 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 4 cut(s) 754, 760, 766, 772
PinAI ACCGGT 1 cut(s) 59
PleI GAGTC 1 cut(s) 960
PpsI GAGTC 1 cut(s) 960
Ppu21I YACGTR 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 907
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 5 cut(s) 265, 328, 817, 879, 904
PspPI GGNCC 6 cut(s) 158, 264, 450, 493, 816, 902
PspPPI RGGWCCY 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 955
PsuI RGATCY 3 cut(s) 225, 588, 877
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 4 cut(s) 552, 695, 735, 784
RsaNI GTAC 4 cut(s) 551, 694, 734, 783
RseI CAYNNNNRTG 1 cut(s) 253
SacII CCGCGG 2 cut(s) 187, 822
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 3 cut(s) 578, 675, 993
Sau3AI GATC 4 cut(s) 225, 588, 877, 973
Sau96I GGNCC 6 cut(s) 158, 264, 450, 493, 816, 902
SchI GAGTC 1 cut(s) 961
ScrFI CCNGG 2 cut(s) 161, 331
SduI GDGCHC 2 cut(s) 337, 949
Sfr303I CCGCGG 2 cut(s) 187, 822
SgrAI CRCCGGYG 1 cut(s) 865
SgrBI CCGCGG 2 cut(s) 187, 822
SinI GGWCC 3 cut(s) 264, 816, 902
SmiI ATTTAAAT 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 2 cut(s) 520, 574
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 2 cut(s) 159, 329
StyI CCWWGG 1 cut(s) 852
SwaI ATTTAAAT 1 cut(s) 579
TaaI ACNGT 3 cut(s) 476, 630, 971
TaiI ACGT 2 cut(s) 241, 672
TaqI TCGA 3 cut(s) 136, 806, 827
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 520, 574
TatI WGTACW 2 cut(s) 733, 782
TauI GCSGC 7 cut(s) 83, 189, 196, 290, 311, 390, 925
TfiI GAWTC 4 cut(s) 754, 760, 766, 772
Tru1I TTAA 3 cut(s) 578, 675, 993
Tru9I TTAA 3 cut(s) 578, 675, 993
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 4 cut(s) 196, 610, 619, 847
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 2 cut(s) 623, 815
TspGWI ACGGA 4 cut(s) 218, 265, 519, 538
VpaK11BI GGWCC 3 cut(s) 264, 816, 902
XapI RAATTY 1 cut(s) 574
XspI CTAG 1 cut(s) 705
ZraI GACGTC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.