Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014242

Physical Location & Seq

Genomic Coordinates Reverse (-)

63553529 .. 63555870

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59997

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCTGCATTTGCACCAAAAACCATCGTATTCTGCACATTTTTCCTTCTTTTAACTACGCTTCCACGATCAAGAGCAGCACTCGATGTTCACTATTATGATAAAACATGTCCACAAGTCGAGAAAATCATATTTCAGACGGTATACAATGCTTCCATGCATGACCCTAAAGTCCCAGCTCGTATCTTAAGGATGTTCTTCCACGATTGCTTTATAAGGGGTTGTGATGCGTCCTTGCTGCTCGACTCAACACCAGGGAACCAAGCAGAGAAAGATGGCCCTCCCAATATTTCAGTCCGATCATTCTACGTGATCAAGGAGGCCAAAGCTAAGCTAGAAGCCGCATGTCCACGCACAGTTTCATGCGCCGATATAATAGGCATTGCTGCAAGAGATGTAGTAACCATGTCTCGAGGCCCATATTGGAATGTGCTTAAAGGAAGAAAAGATGGAAGGGTGTCGAGGGCTAACGAGACCATCAACCTACCGGCTCCAACCTTCAATGTAAGCCAACTGATTCAAAGCTTTGCCAAGAGAGGTTTAGGAGTCAAAGAATTGGTAGCTCTATCCGGTGGCCATACTCTAGGGTTTTCGCATTGTTCTTCCTTCCAAGCCCGTCTTCGCAATTTTAGTTCAGTCCACGATGTCGACCCGACTATGGACAGTGAGTTTGCTCTAAAGCTAAGAAAGCAATGCCCTAAACCAAACAGAGATCACGGCGCTGGGGAGTTGTTGGACTCGACATCCTCGATTTTTGATAATGATTATTACAAGAGATTGATAGGAGGAAAGGGAGTGTTTGGATCGGACCAAGCATTGTTTGGTGATTACAGGACTAAATGGATTGTTGAATCGTATGCCAAAGATCAAAGTTTGTTCTTTAAAGAGTTTGCAGCTTCTATGGTGAAACTAGGTAATGTTGGGGTGATTGAGGATGGAGAAGTGAGACTGAATTGCAGAGTGTTAACTTCTTACTTTTCATTGCATCCGACAAACGTCAATGGCTCACGGTACTACAATAGCCAAAAAATTTACGATCATTCTGAGATCATATCTCCGAGGGACTCGGTGGGACATGACACTCACACAGCCTCCATTGCAGCAGGAAGAGAAATTGCAGGAGCAAACATCTATGGATTGCCTGAAGGAGTTGCAAGGGGCGGAGTCCCCCATTCCAGGATGGCTGTATACAAAGTTTGCTGGGCAATGGGATGTAGTCTTGCGGATCTCCTAGCTGCCTTTGATATGCAATTGCTGAGAGAGTTGATATCATATCTGTTTCATTCGGAATGTCATCATCTTTCAGCTAAACGGAGGATCCAGTGGCAATTGGAGCTTTTCAGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

449

Amino Acids

50.07

Weight (kDa)

8.96

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	47 - 289	6.5e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51890
fragaria_vesca	FvH4_7g28760
malus_domestica	MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica	Prupe.2G287900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376321
rosa_laevigata	RLG00000026612
rosa_multiflora	Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282210
rosa_rugosa	Rorug01G0395600
rosa_samantha	Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana	Rw1G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AasI	GACNNNNNNGTC	1 cut(s)	170
AccI	GTMKAC	3 cut(s)	144, 648, 1188
AciI	CCGC	3 cut(s)	342, 1161, 1223
AclWI	GGATC	4 cut(s)	811, 1233, 1312, 1325
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	1029
AcuI	CTGAAG	1 cut(s)	1164
AfaI	GTAC	1 cut(s)	1013
AfiI	CCNNNNNNNGG	2 cut(s)	658, 1176
AflII	CTTAAG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	502, 521, 851
AjnI	CCWGG	2 cut(s)	253, 1175
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
Alw26I	GTCTC	3 cut(s)	414, 467, 940
AlwI	GGATC	4 cut(s)	811, 1233, 1312, 1325
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	4 cut(s)	277, 321, 415, 574
ApeKI	GCWGC	7 cut(s)	5, 77, 238, 386, 893, 1100, 1235
ApoI	RAATTY	1 cut(s)	1029
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AspLEI	GCGC	2 cut(s)	368, 722
AspS9I	GGNCC	3 cut(s)	278, 416, 808
AsuHPI	GGTGA	3 cut(s)	836, 916, 937
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	808
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	1317
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	6 cut(s)	89, 225, 373, 905, 1112, 1222
BccI	CCATC	6 cut(s)	32, 269, 443, 485, 929, 1174
BceAI	ACGGC	1 cut(s)	733
BciT130I	CCWGG	2 cut(s)	255, 1177
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	3 cut(s)	414, 467, 940
BfaI	CTAG	4 cut(s)	335, 584, 911, 1232
BfoI	RGCGCY	1 cut(s)	723
BfrI	CTTAAG	1 cut(s)	187
BisI	GCNGC	8 cut(s)	6, 78, 239, 342, 387, 894, 1101, 1236
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	8 cut(s)	7, 79, 240, 343, 388, 895, 1102, 1237
Bme1390I	CCNGG	2 cut(s)	255, 1177
Bme18I	GGWCC	1 cut(s)	808
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	3 cut(s)	278, 416, 808
BmiI	GGNNCC	3 cut(s)	260, 492, 1319
BmrFI	CCNGG	2 cut(s)	255, 1177
BmsI	GCATC	2 cut(s)	217, 994
BoxI	GACNNNNGTC	1 cut(s)	995
BpiI	GAAGAC	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
Bpu1102I	GCTNAGC	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	254, 1058
BsaWI	WCCGGW	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	1076, 1106
Bsc4I	CCNNNNNNNGG	2 cut(s)	658, 1176
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	1321
Bse3DI	GCAATG	5 cut(s)	381, 698, 980, 1095, 1212
BseBI	CCWGG	2 cut(s)	255, 1177
BseDI	CCNNGG	2 cut(s)	254, 1058
BseGI	GGATG	6 cut(s)	198, 743, 940, 985, 1185, 1217
BseLI	CCNNNNNNNGG	2 cut(s)	658, 1176
BseMI	GCAATG	5 cut(s)	381, 698, 980, 1095, 1212
BseMII	CTCAG	2 cut(s)	1035, 1247
BseNI	ACTGG	1 cut(s)	1321
BseXI	GCAGC	6 cut(s)	89, 225, 373, 905, 1112, 1222
BseYI	CCCAGC	3 cut(s)	175, 722, 1200
BsgI	GTGCAG	1 cut(s)	19
BshFI	GGCC	4 cut(s)	279, 323, 417, 576
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	488, 570
BslFI	GGGAC	4 cut(s)	158, 1076, 1086, 1151
BslI	CCNNNNNNNGG	2 cut(s)	658, 1176
BsmAI	GTCTC	3 cut(s)	414, 467, 940
BsmFI	GGGAC	4 cut(s)	158, 1076, 1086, 1151
BsnI	GGCC	4 cut(s)	279, 323, 417, 576
Bso31I	GGTCTC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	411
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	3 cut(s)	342, 1161, 1223
BspANI	GGCC	4 cut(s)	279, 323, 417, 576
BspCNI	CTCAG	2 cut(s)	1036, 1248
BspLI	GGNNCC	3 cut(s)	260, 492, 1319
BspPI	GGATC	4 cut(s)	811, 1233, 1312, 1325
BspTI	CTTAAG	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	5 cut(s)	381, 698, 980, 1095, 1212
BsrFI	RCCGGY	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	1321
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	254, 1058
BssNAI	GTATAC	2 cut(s)	145, 1189
Bst1107I	GTATAC	2 cut(s)	145, 1189
Bst2UI	CCWGG	2 cut(s)	255, 1177
Bst4CI	ACNGT	4 cut(s)	142, 358, 665, 1011
Bst6I	CTCTTC	1 cut(s)	1102
BstAFI	CTTAAG	1 cut(s)	187
BstBAI	YACGTR	1 cut(s)	310
BstDEI	CTNAG	4 cut(s)	330, 683, 1044, 1256
BstF5I	GGATG	6 cut(s)	198, 743, 940, 985, 1185, 1217
BstH2I	RGCGCY	1 cut(s)	723
BstHHI	GCGC	2 cut(s)	368, 722
BstMAI	GTCTC	3 cut(s)	414, 467, 940
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 688, 1097, 1333, 1342
BstNI	CCWGG	2 cut(s)	255, 1177
BstNSI	RCATGY	2 cut(s)	111, 348
BstPAI	GACNNNNGTC	1 cut(s)	995
BstSCI	CCNGG	2 cut(s)	253, 1175
BstV1I	GCAGC	6 cut(s)	89, 225, 373, 905, 1112, 1222
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	2 cut(s)	1225, 1317
BstYI	RGATCY	2 cut(s)	1225, 1317
BstZ17I	GTATAC	2 cut(s)	145, 1189
BsuRI	GGCC	4 cut(s)	279, 323, 417, 576
BtsCI	GGATG	6 cut(s)	198, 743, 940, 985, 1185, 1217
BtsIMutI	CAGTG	2 cut(s)	670, 1328
CfoI	GCGC	2 cut(s)	368, 722
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	278, 416, 808
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	1012
CviAII	CATG	7 cut(s)	108, 157, 161, 345, 363, 406, 1076
CviQI	GTAC	1 cut(s)	1012
DdeI	CTNAG	4 cut(s)	330, 683, 1044, 1256
DraI	TTTAAA	1 cut(s)	883
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	1102
EarI	CTCTTC	1 cut(s)	1102
EciI	GGCGGA	1 cut(s)	1176
Eco31I	GGTCTC	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	1269
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	1164
Eco88I	CYCGRG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	253, 1175
EcoRV	GATATC	1 cut(s)	1269
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	7 cut(s)	111, 160, 164, 348, 366, 409, 1079
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	4 cut(s)	158, 1076, 1086, 1151
FatI	CATG	7 cut(s)	107, 156, 160, 344, 362, 405, 1075
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	3 cut(s)	144, 648, 1188
Fnu4HI	GCNGC	8 cut(s)	6, 78, 239, 342, 387, 894, 1101, 1236
FokI	GGATG	6 cut(s)	205, 730, 947, 972, 1192, 1224
Fsp4HI	GCNGC	8 cut(s)	6, 78, 239, 342, 387, 894, 1101, 1236
FspBI	CTAG	4 cut(s)	335, 584, 911, 1232
GlaI	GCGC	2 cut(s)	367, 721
GluI	GCNGC	8 cut(s)	6, 78, 239, 342, 387, 894, 1101, 1236
GsaI	CCCAGC	3 cut(s)	179, 726, 1204
HaeII	RGCGCY	1 cut(s)	723
HaeIII	GGCC	4 cut(s)	279, 323, 417, 576
HapII	CCGG	2 cut(s)	488, 570
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	2 cut(s)	368, 722
Hin1II	CATG	7 cut(s)	111, 160, 164, 348, 366, 409, 1079
Hin6I	GCGC	2 cut(s)	366, 720
HinP1I	GCGC	2 cut(s)	366, 720
HincII	GTYRAC	2 cut(s)	649, 966
HindII	GTYRAC	2 cut(s)	649, 966
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	7 cut(s)	245, 517, 546, 737, 851, 1064, 1164
HpaI	GTTAAC	1 cut(s)	966
HpaII	CCGG	2 cut(s)	488, 570
HphI	GGTGA	3 cut(s)	836, 916, 937
Hpy166II	GTNNAC	8 cut(s)	91, 113, 145, 350, 640, 649, 966, 1189
Hpy188I	TCNGA	7 cut(s)	138, 299, 808, 990, 1045, 1059, 1288
Hpy188III	TCNNGA	3 cut(s)	72, 121, 411
Hpy8I	GTNNAC	8 cut(s)	91, 113, 145, 350, 640, 649, 966, 1189
HpyAV	CCTTC	5 cut(s)	56, 447, 508, 616, 1139
HpyCH4III	ACNGT	4 cut(s)	142, 358, 665, 1011
HpyCH4IV	ACGT	2 cut(s)	309, 996
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 688, 1097, 1333, 1342
HpyF3I	CTNAG	4 cut(s)	330, 683, 1044, 1256
HpySE526I	ACGT	2 cut(s)	309, 996
Hsp92II	CATG	7 cut(s)	111, 160, 164, 348, 366, 409, 1079
HspAI	GCGC	2 cut(s)	366, 720
Ksp22I	TGATCA	1 cut(s)	312
KspAI	GTTAAC	1 cut(s)	966
LmnI	GCTCC	3 cut(s)	496, 1121, 1333
Lsp1109I	GCAGC	6 cut(s)	89, 225, 373, 905, 1112, 1222
LweI	GCATC	2 cut(s)	217, 994
MaeI	CTAG	4 cut(s)	335, 584, 911, 1232
MaeII	ACGT	2 cut(s)	309, 996
MaeIII	GTNAC	1 cut(s)	400
MboII	GAAGA	5 cut(s)	190, 453, 594, 611, 1119
MfeI	CAATTG	2 cut(s)	1250, 1328
MflI	RGATCY	2 cut(s)	1225, 1317
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	7 cut(s)	554, 625, 952, 1029, 1113, 1250, 1328
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	5 cut(s)	239, 555, 731, 1058, 1173
MmeI	TCCRAC	3 cut(s)	518, 714, 1013
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	6 cut(s)	53, 188, 435, 882, 965, 1348
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	576
MspCI	CTTAAG	1 cut(s)	187
MspI	CCGG	2 cut(s)	488, 570
MspR9I	CCNGG	2 cut(s)	255, 1177
MunI	CAATTG	2 cut(s)	1250, 1328
MvaI	CCWGG	2 cut(s)	255, 1177
MwoI	GCNNNNNNNGC	5 cut(s)	11, 688, 1097, 1333, 1342
NlaIII	CATG	7 cut(s)	111, 160, 164, 348, 366, 409, 1079
NlaIV	GGNNCC	3 cut(s)	260, 492, 1319
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	2 cut(s)	111, 348
PaeR7I	CTCGAG	1 cut(s)	411
PciI	ACATGT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	517, 851
PfoI	TCCNGGA	1 cut(s)	1175
PkrI	GCNGC	8 cut(s)	7, 79, 240, 343, 388, 895, 1102, 1237
PleI	GAGTC	5 cut(s)	239, 554, 731, 1058, 1172
PpsI	GAGTC	5 cut(s)	239, 554, 731, 1058, 1172
Ppu21I	YACGTR	1 cut(s)	310
PscI	ACATGT	1 cut(s)	107
PshAI	GACNNNNGTC	1 cut(s)	995
PsiI	TTATAA	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	253, 1175
PspFI	CCCAGC	3 cut(s)	175, 722, 1200
PspGI	CCWGG	2 cut(s)	253, 1175
PspN4I	GGNNCC	3 cut(s)	260, 492, 1319
PspPI	GGNCC	3 cut(s)	278, 416, 808
PsuI	RGATCY	2 cut(s)	1225, 1317
RsaI	GTAC	1 cut(s)	1013
RsaNI	GTAC	1 cut(s)	1012
RseI	CAYNNNNRTG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	647
SaqAI	TTAA	6 cut(s)	53, 188, 435, 882, 965, 1348
SatI	GCNGC	8 cut(s)	6, 78, 239, 342, 387, 894, 1101, 1236
Sau96I	GGNCC	3 cut(s)	278, 416, 808
SchI	GAGTC	5 cut(s)	239, 555, 731, 1058, 1173
ScrFI	CCNGG	2 cut(s)	255, 1177
SfaNI	GCATC	2 cut(s)	217, 994
Sfr274I	CTCGAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	808
SlaI	CTCGAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	187, 411
SmoI	CTYRAG	2 cut(s)	187, 411
Sse9I	AATT	7 cut(s)	554, 625, 952, 1029, 1113, 1250, 1328
SsiI	CCGC	3 cut(s)	342, 1161, 1223
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	4 cut(s)	335, 584, 911, 1232
StyD4I	CCNGG	2 cut(s)	253, 1175
TaaI	ACNGT	4 cut(s)	142, 358, 665, 1011
TaiI	ACGT	2 cut(s)	312, 999
TaqI	TCGA	8 cut(s)	84, 120, 243, 412, 461, 648, 740, 749
TasI	AATT	7 cut(s)	554, 625, 952, 1029, 1113, 1250, 1328
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	517, 851
Tru1I	TTAA	6 cut(s)	53, 188, 435, 882, 965, 1348
Tru9I	TTAA	6 cut(s)	53, 188, 435, 882, 965, 1348
TscAI	CASTG	2 cut(s)	670, 1328
TseI	GCWGC	7 cut(s)	5, 77, 238, 386, 893, 1100, 1235
TspDTI	ATGAA	3 cut(s)	351, 969, 1271
TspGWI	ACGGA	1 cut(s)	1327
TspRI	CASTG	2 cut(s)	670, 1328
Vha464I	CTTAAG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	1 cut(s)	1029
XceI	RCATGY	2 cut(s)	111, 348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XhoI	CTCGAG	1 cut(s)	411
XmiI	GTMKAC	3 cut(s)	144, 648, 1188
XspI	CTAG	4 cut(s)	335, 584, 911, 1232
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.