RLG00000026612

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014242
Physical Location & Seq
Forward (+)
4229710 .. 4230904
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026612

Sequence Viewer

Length: 933 bp
ATGGCTGCATTTGCACCAAAAACCATAGTATTCTGCACATTTTTCCTTCTTTTAACTACGCCTCTACAATCAAGAGCAGCACTCGATGCTCACTATTATGATAAAACATGTCCACAAGTTGAGAAAATCATATTTCAGACAGTATACAATGCTTCCATGCATGACCTAAAGTCCCAGCTCGGTTGTGATGCGTCCTTGCTGCTCGACCCAACACCAGGGAACCAAGCAGAGAAAGAAGGCCCTCCCAATATTTCAGTCCGATCGTTCTACGTGATCGAGGAGGCCAAAGCTAAGCTAGAAGCCGCATGTCCACACACAGTTTCATGCGCCGATATAATAGGCATTGCTGCAAGAGATGTAGTAACCTTGTCTCGAGGCCCATATTGGAATGTGCTTAAAGGAAGAAAAGATGGAAGGGTGTCGAGGGCTAACGAGACCATCAACCTACCGGCTCCAACCTTCAATGTAAGCCAACTGATTCAAAGCTTTGCCAAGAGAGGTTTAGGAGTCAAAGAATTGGTAGCTCTATCCGGTGGCCATACTCTAGGGTTTTCGCATTGTTTTTCCTTCCAAGCCCGTCTTCGCAATTTTAGTTCGGTCCACGATTTCGACCCGACTATGGACAGTGAGTTTGCTCTAAAGCTAAGAAAGCAATGCCCTAAACCAAACAGAGATCACAGCGCTGGGGAGTTGTTGGACTCGACATCCTCGATTTTTGATAATGATTATTACAAGAGATTGATAGGAGGAAAGGGAGTGTTTGGATCGGACCAAGCATTGTTTGGTGATTACAGGACTAAATGGATTGTTGAATCGTATGCCAAAGATCAAAGTTTGTTCTTTAAAGAGTTTGCAGCTTCTATGGTGAAACTAGGTAATGTTGGGGTGATTGAGGATGGAGAAGTGAGACTGAATTGCAGGGTGGTAAACTGA

Protein Analysis

311

Amino Acids

34.28

Weight (kDa)

8.34

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 34 - 276 2.4e-70 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51890
fragaria_vesca FvH4_7g28760
malus_domestica MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica Prupe.2G287900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376321
rosa_laevigata RLG00000026612
rosa_multiflora Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii Rroxscaffold_4G00282210
rosa_rugosa Rorug01G0395600
rosa_samantha Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana Rw1G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AciI CCGC 1 cut(s) 303
AclWI GGATC 1 cut(s) 772
AcoI YGGCCR 1 cut(s) 535
AfeI AGCGCT 1 cut(s) 682
AfiI CCNNNNNNNGG 2 cut(s) 215, 619
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 3 cut(s) 463, 482, 812
AhdI GACNNNNNGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 7 cut(s) 178, 290, 295, 486, 524, 643, 857
AluI AGCT 7 cut(s) 178, 290, 295, 486, 524, 643, 857
Alw26I GTCTC 3 cut(s) 375, 428, 901
AlwI GGATC 1 cut(s) 772
Ama87I CYCGRG 1 cut(s) 372
Aor51HI AGCGCT 1 cut(s) 682
AoxI GGCC 4 cut(s) 238, 282, 376, 535
ApeKI GCWGC 5 cut(s) 5, 77, 199, 347, 854
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AspLEI GCGC 2 cut(s) 329, 683
AspS9I GGNCC 4 cut(s) 239, 377, 598, 769
AsuHPI GGTGA 3 cut(s) 797, 877, 898
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 2 cut(s) 598, 769
BalI TGGCCA 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 572
BbvI GCAGC 4 cut(s) 89, 186, 334, 866
BccI CCATC 3 cut(s) 404, 446, 890
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 3 cut(s) 375, 428, 901
BfaI CTAG 3 cut(s) 296, 545, 872
BfoI RGCGCY 1 cut(s) 684
BisI GCNGC 6 cut(s) 6, 78, 200, 303, 348, 855
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 6 cut(s) 7, 79, 201, 304, 349, 856
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 2 cut(s) 598, 769
BmeRI GACNNNNNGTC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 4 cut(s) 239, 377, 598, 769
BmiI GGNNCC 2 cut(s) 221, 453
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 76, 178
BpiI GAAGAC 1 cut(s) 572
BplI GAGNNNNNCTC 2 cut(s) 66, 98
Bpu1102I GCTNAGC 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 530
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 619
Bse118I RCCGGY 1 cut(s) 448
Bse3DI GCAATG 2 cut(s) 342, 659
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 704, 901
BseLI CCNNNNNNNGG 2 cut(s) 215, 619
BseMI GCAATG 2 cut(s) 342, 659
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 4 cut(s) 89, 186, 334, 866
BseYI CCCAGC 2 cut(s) 174, 683
BsgI GTGCAG 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 4 cut(s) 240, 284, 378, 537
BsiEI CGRYCG 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 2 cut(s) 449, 531
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 215, 619
BsmAI GTCTC 3 cut(s) 375, 428, 901
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 4 cut(s) 240, 284, 378, 537
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 372
Bsp143I GATC 5 cut(s) 260, 273, 673, 764, 826
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 1 cut(s) 303
BspANI GGCC 4 cut(s) 240, 284, 378, 537
BspLI GGNNCC 2 cut(s) 221, 453
BspPI GGATC 1 cut(s) 772
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 2 cut(s) 342, 659
BsrFI RCCGGY 1 cut(s) 448
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 5 cut(s) 260, 273, 673, 764, 826
BssNAI GTATAC 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 142, 319, 626
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 291, 644
BstF5I GGATG 2 cut(s) 704, 901
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 2 cut(s) 329, 683
BstKTI GATC 5 cut(s) 263, 276, 676, 767, 829
BstMAI GTCTC 3 cut(s) 375, 428, 901
BstMBI GATC 5 cut(s) 260, 273, 673, 764, 826
BstMCI CGRYCG 1 cut(s) 263
BstMWI GCNNNNNNNGC 3 cut(s) 11, 86, 649
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 2 cut(s) 111, 309
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 4 cut(s) 89, 186, 334, 866
BstV2I GAAGAC 1 cut(s) 572
BstZ17I GTATAC 1 cut(s) 145
BsuRI GGCC 4 cut(s) 240, 284, 378, 537
BtsCI GGATG 2 cut(s) 704, 901
BtsIMutI CAGTG 1 cut(s) 631
CfoI GCGC 2 cut(s) 329, 683
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 4 cut(s) 239, 377, 598, 769
CseI GACGC 1 cut(s) 180
CviAII CATG 5 cut(s) 108, 157, 161, 306, 324
DdeI CTNAG 2 cut(s) 291, 644
DpnI GATC 5 cut(s) 262, 275, 675, 766, 828
DpnII GATC 5 cut(s) 260, 273, 673, 764, 826
DraI TTTAAA 1 cut(s) 844
DriI GACNNNNNGTC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 535
Eam1105I GACNNNNNGTC 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 2 cut(s) 598, 769
Eco47III AGCGCT 1 cut(s) 682
Eco88I CYCGRG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 162
FaeI CATG 5 cut(s) 111, 160, 164, 309, 327
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 1 cut(s) 157
FatI CATG 5 cut(s) 107, 156, 160, 305, 323
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 6 cut(s) 6, 78, 200, 303, 348, 855
FokI GGATG 2 cut(s) 691, 908
Fsp4HI GCNGC 6 cut(s) 6, 78, 200, 303, 348, 855
FspBI CTAG 3 cut(s) 296, 545, 872
GlaI GCGC 2 cut(s) 328, 682
GluI GCNGC 6 cut(s) 6, 78, 200, 303, 348, 855
GsaI CCCAGC 2 cut(s) 178, 687
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 4 cut(s) 240, 284, 378, 537
HapII CCGG 2 cut(s) 449, 531
HgaI GACGC 1 cut(s) 180
HhaI GCGC 2 cut(s) 329, 683
Hin1II CATG 5 cut(s) 111, 160, 164, 309, 327
Hin6I GCGC 2 cut(s) 327, 681
HinP1I GCGC 2 cut(s) 327, 681
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 4 cut(s) 478, 507, 698, 812
HpaII CCGG 2 cut(s) 449, 531
HphI GGTGA 3 cut(s) 797, 877, 898
Hpy166II GTNNAC 5 cut(s) 113, 145, 311, 601, 928
Hpy188I TCNGA 3 cut(s) 138, 260, 769
Hpy188III TCNNGA 2 cut(s) 72, 372
Hpy8I GTNNAC 5 cut(s) 113, 145, 311, 601, 928
HpyAV CCTTC 5 cut(s) 56, 230, 408, 469, 577
HpyCH4III ACNGT 3 cut(s) 142, 319, 626
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 7 cut(s) 8, 14, 36, 160, 350, 854, 918
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 86, 649
HpyF3I CTNAG 2 cut(s) 291, 644
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 5 cut(s) 111, 160, 164, 309, 327
HspAI GCGC 2 cut(s) 327, 681
Kzo9I GATC 5 cut(s) 260, 273, 673, 764, 826
LmnI GCTCC 1 cut(s) 457
LpnPI CCDG 8 cut(s) 188, 201, 228, 462, 544, 669, 778, 904
Lsp1109I GCAGC 4 cut(s) 89, 186, 334, 866
LweI GCATC 2 cut(s) 76, 178
MaeI CTAG 3 cut(s) 296, 545, 872
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 361
MalI GATC 5 cut(s) 262, 275, 675, 766, 828
MboI GATC 5 cut(s) 260, 273, 673, 764, 826
MboII GAAGA 2 cut(s) 414, 572
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 3 cut(s) 515, 586, 913
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 2 cut(s) 516, 692
MmeI TCCRAC 2 cut(s) 479, 675
Mox20I TGGCCA 1 cut(s) 537
Mph1103I ATGCAT 1 cut(s) 162
MscI TGGCCA 1 cut(s) 537
MseI TTAA 3 cut(s) 53, 396, 843
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 537
MspI CCGG 2 cut(s) 449, 531
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 11, 86, 649
NdeII GATC 5 cut(s) 260, 273, 673, 764, 826
NlaIII CATG 5 cut(s) 111, 160, 164, 309, 327
NlaIV GGNNCC 2 cut(s) 221, 453
NsiI ATGCAT 1 cut(s) 162
NspI RCATGY 2 cut(s) 111, 309
PaeR7I CTCGAG 1 cut(s) 372
PciI ACATGT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 707
PfeI GAWTC 2 cut(s) 478, 812
PkrI GCNGC 6 cut(s) 7, 79, 201, 304, 349, 856
Ple19I CGATCG 1 cut(s) 263
PleI GAGTC 2 cut(s) 515, 692
PpsI GAGTC 2 cut(s) 515, 692
Ppu21I YACGTR 1 cut(s) 271
PscI ACATGT 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 2 cut(s) 174, 683
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 221, 453
PspPI GGNCC 4 cut(s) 239, 377, 598, 769
PvuI CGATCG 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 53, 396, 843
SatI GCNGC 6 cut(s) 6, 78, 200, 303, 348, 855
Sau3AI GATC 5 cut(s) 260, 273, 673, 764, 826
Sau96I GGNCC 4 cut(s) 239, 377, 598, 769
SchI GAGTC 2 cut(s) 516, 692
ScrFI CCNGG 1 cut(s) 216
SfaNI GCATC 2 cut(s) 76, 178
Sfr274I CTCGAG 1 cut(s) 372
SinI GGWCC 2 cut(s) 598, 769
SlaI CTCGAG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 3 cut(s) 515, 586, 913
SsiI CCGC 1 cut(s) 303
SspI AATATT 1 cut(s) 250
SspMI CTAG 3 cut(s) 296, 545, 872
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 3 cut(s) 142, 319, 626
TaiI ACGT 1 cut(s) 273
TaqI TCGA 8 cut(s) 84, 204, 276, 373, 422, 609, 701, 710
TaqII GACCGA 1 cut(s) 586
TasI AATT 3 cut(s) 515, 586, 913
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 2 cut(s) 478, 812
Tru1I TTAA 3 cut(s) 53, 396, 843
Tru9I TTAA 3 cut(s) 53, 396, 843
TscAI CASTG 1 cut(s) 631
TseI GCWGC 5 cut(s) 5, 77, 199, 347, 854
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 631
VpaK11BI GGWCC 2 cut(s) 598, 769
XceI RCATGY 2 cut(s) 111, 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 779
XhoI CTCGAG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 3 cut(s) 296, 545, 872
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.