Rmu_sc0016074.1_g000002

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016074.1
OG0014242
Physical Location & Seq
Reverse (-)
3635 .. 4682
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016074.1_g000002.1.cds

Sequence Viewer

Length: 789 bp
atgcatgaccctaaagtccctgctcgtatcttaaggatgttcttccacgattgctttataaggggttgtgatgcgtccttgctgctcgactcaacaccagggaaccaagcagagaaagatggccctcccaatatttcagtccgatcattctacgtgatcaaggaggccaaagctaagctagaagccgcatgtccacgcacagtttcatgcgccgatataataggcattgctgcaagagatgtagtaaccatggtacgaagaaaagatggaagggtgtcgagggctaacgagaccatcaacctaccggctccaaccttcaatgtaagccaactgattcaaagctttgccaagagaggtttaggagtcaaagaattggtagctctatccggtggccatactctagggttttcgcattgttcttccttccaagcccgtcttcgcaattttagttcagtccacgatgtcgacccgactatggacagtgagtttgctctaaagctaagaaagcaatgccctaaaccaaacagagatcacggcgctggggagttgttggactcgacatcctcgatttttgataatgattattacaagagattgataggaggaaagggagtgtttggatcggaccaagcattgtttggtgattacaggactaaatggattgttgaatcgtatgccaaagatcaaagtttgttctttaaagagtttgcagcttctatggtgaaactaggtaatgttggggtgattgaggatggagaagtgagactgaattgcagagtggtaaactga

Protein Analysis

262

Amino Acids

28.94

Weight (kDa)

8.94

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51890
fragaria_vesca FvH4_7g28760
malus_domestica MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica Prupe.2G287900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376321
rosa_laevigata RLG00000026612
rosa_multiflora Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii Rroxscaffold_4G00282210
rosa_rugosa Rorug01G0395600
rosa_samantha Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana Rw1G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AasI GACNNNNNNGTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 465
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 628
AcoI YGGCCR 1 cut(s) 391
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 475
AflII CTTAAG 1 cut(s) 31
AgsI TTSAA 3 cut(s) 319, 338, 668
AjnI CCWGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AluBI AGCT 6 cut(s) 173, 178, 342, 380, 499, 713
AluI AGCT 6 cut(s) 173, 178, 342, 380, 499, 713
Alw26I GTCTC 2 cut(s) 284, 757
AlwI GGATC 1 cut(s) 628
AoxI GGCC 3 cut(s) 121, 165, 391
ApeKI GCWGC 3 cut(s) 82, 230, 710
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AspLEI GCGC 2 cut(s) 212, 539
AspS9I GGNCC 2 cut(s) 122, 625
AsuHPI GGTGA 3 cut(s) 653, 733, 754
AvaII GGWCC 1 cut(s) 625
BalI TGGCCA 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 428
BbvI GCAGC 3 cut(s) 69, 217, 722
BccI CCATC 4 cut(s) 113, 260, 302, 746
BceAI ACGGC 1 cut(s) 550
BciT130I CCWGG 1 cut(s) 99
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 284, 757
BfaI CTAG 3 cut(s) 179, 401, 728
BfoI RGCGCY 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 31
BisI GCNGC 4 cut(s) 83, 186, 231, 711
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 4 cut(s) 84, 187, 232, 712
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 2 cut(s) 122, 625
BmiI GGNNCC 2 cut(s) 104, 309
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 98, 249
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse118I RCCGGY 1 cut(s) 304
Bse3DI GCAATG 2 cut(s) 225, 515
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 98, 249
BseGI GGATG 3 cut(s) 42, 560, 757
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 2 cut(s) 225, 515
BseXI GCAGC 3 cut(s) 69, 217, 722
BseYI CCCAGC 1 cut(s) 539
BshFI GGCC 3 cut(s) 123, 167, 393
BsiSI CCGG 2 cut(s) 305, 387
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 2 cut(s) 284, 757
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 3 cut(s) 123, 167, 393
Bso31I GGTCTC 1 cut(s) 284
Bsp143I GATC 5 cut(s) 143, 156, 529, 620, 682
Bsp1720I GCTNAGC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 1 cut(s) 186
BspANI GGCC 3 cut(s) 123, 167, 393
BspLI GGNNCC 2 cut(s) 104, 309
BspPI GGATC 1 cut(s) 628
BspTI CTTAAG 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 2 cut(s) 225, 515
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 98, 249
BssMI GATC 5 cut(s) 143, 156, 529, 620, 682
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 202, 482
BstAFI CTTAAG 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 174, 500
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 3 cut(s) 42, 560, 757
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 2 cut(s) 212, 539
BstKTI GATC 5 cut(s) 146, 159, 532, 623, 685
BstMAI GTCTC 2 cut(s) 284, 757
BstMBI GATC 5 cut(s) 143, 156, 529, 620, 682
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 3 cut(s) 69, 217, 722
BstV2I GAAGAC 1 cut(s) 428
BsuRI GGCC 3 cut(s) 123, 167, 393
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 42, 560, 757
BtsIMutI CAGTG 1 cut(s) 487
CfoI GCGC 2 cut(s) 212, 539
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 122, 625
CseI GACGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 254
CviAII CATG 4 cut(s) 5, 189, 207, 250
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 174, 500
DpnI GATC 5 cut(s) 145, 158, 531, 622, 684
DpnII GATC 5 cut(s) 143, 156, 529, 620, 682
DraI TTTAAA 1 cut(s) 700
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 4 cut(s) 8, 192, 210, 253
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 2
FatI CATG 4 cut(s) 4, 188, 206, 249
FbaI TGATCA 1 cut(s) 156
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 4 cut(s) 83, 186, 231, 711
FokI GGATG 3 cut(s) 49, 547, 764
Fsp4HI GCNGC 4 cut(s) 83, 186, 231, 711
FspBI CTAG 3 cut(s) 179, 401, 728
GlaI GCGC 2 cut(s) 211, 538
GluI GCNGC 4 cut(s) 83, 186, 231, 711
GsaI CCCAGC 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 3 cut(s) 123, 167, 393
HapII CCGG 2 cut(s) 305, 387
HgaI GACGC 1 cut(s) 63
HhaI GCGC 2 cut(s) 212, 539
Hin1II CATG 4 cut(s) 8, 192, 210, 253
Hin6I GCGC 2 cut(s) 210, 537
HinP1I GCGC 2 cut(s) 210, 537
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 5 cut(s) 89, 334, 363, 554, 668
HpaII CCGG 2 cut(s) 305, 387
HphI GGTGA 3 cut(s) 653, 733, 754
Hpy166II GTNNAC 4 cut(s) 194, 457, 466, 784
Hpy188I TCNGA 2 cut(s) 143, 625
Hpy8I GTNNAC 4 cut(s) 194, 457, 466, 784
HpyAV CCTTC 3 cut(s) 264, 325, 433
HpyCH4III ACNGT 2 cut(s) 202, 482
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 4 cut(s) 4, 233, 710, 774
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpyF3I CTNAG 2 cut(s) 174, 500
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 4 cut(s) 8, 192, 210, 253
HspAI GCGC 2 cut(s) 210, 537
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 5 cut(s) 143, 156, 529, 620, 682
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 7 cut(s) 33, 84, 111, 318, 400, 525, 634
Lsp1109I GCAGC 3 cut(s) 69, 217, 722
LweI GCATC 1 cut(s) 61
MaeI CTAG 3 cut(s) 179, 401, 728
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 244
MalI GATC 5 cut(s) 145, 158, 531, 622, 684
MboI GATC 5 cut(s) 143, 156, 529, 620, 682
MboII GAAGA 4 cut(s) 34, 270, 411, 428
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 3 cut(s) 371, 442, 769
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 3 cut(s) 83, 372, 548
MmeI TCCRAC 2 cut(s) 335, 531
MnlI CCTC 7 cut(s) 135, 157, 273, 347, 574, 596, 742
Mox20I TGGCCA 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 393
MseI TTAA 2 cut(s) 32, 699
Msp20I TGGCCA 1 cut(s) 393
MspCI CTTAAG 1 cut(s) 31
MspI CCGG 2 cut(s) 305, 387
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 505
NcoI CCATGG 1 cut(s) 249
NdeII GATC 5 cut(s) 143, 156, 529, 620, 682
NlaIII CATG 4 cut(s) 8, 192, 210, 253
NlaIV GGNNCC 2 cut(s) 104, 309
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 563
PfeI GAWTC 2 cut(s) 334, 668
PkrI GCNGC 4 cut(s) 84, 187, 232, 712
PleI GAGTC 3 cut(s) 83, 371, 548
PpsI GAGTC 3 cut(s) 83, 371, 548
Ppu21I YACGTR 1 cut(s) 154
PsiI TTATAA 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 104, 309
PspPI GGNCC 2 cut(s) 122, 625
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SalI GTCGAC 1 cut(s) 464
SaqAI TTAA 2 cut(s) 32, 699
SatI GCNGC 4 cut(s) 83, 186, 231, 711
Sau3AI GATC 5 cut(s) 143, 156, 529, 620, 682
Sau96I GGNCC 2 cut(s) 122, 625
SchI GAGTC 3 cut(s) 83, 372, 548
ScrFI CCNGG 1 cut(s) 99
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 3 cut(s) 371, 442, 769
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 133
SspMI CTAG 3 cut(s) 179, 401, 728
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 202, 482
TaiI ACGT 1 cut(s) 156
TaqI TCGA 5 cut(s) 87, 278, 465, 557, 566
TasI AATT 3 cut(s) 371, 442, 769
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 334, 668
Tru1I TTAA 2 cut(s) 32, 699
Tru9I TTAA 2 cut(s) 32, 699
TscAI CASTG 1 cut(s) 487
TseI GCWGC 3 cut(s) 82, 230, 710
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 1 cut(s) 487
Vha464I CTTAAG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 625
XceI RCATGY 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 3 cut(s) 179, 401, 728
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.