MD00G1004800.v1.1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0014242
Physical Location & Seq
Reverse (-)
730901 .. 733118
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1004800.v1.1.491

Sequence Viewer

Length: 864 bp
ATGCTTCCATGCATGACCCTAAAGTCCCATCTAAGGATGTTCTTCCATGATTGTTTCATAAGGGGCGCCCTTTCACTGTTCATGGAACAGGATAAAAATAATCTCAAGTTGTCTGGATGCGATGCGTCGTTGCTACTAGACTCAACCGCAGGAAACCAAGCAGAGAAAGATGGCCCTCCCAATATCTCAGTCCGATCATTCTATGTGATAGACGATGCCAAAGCCAAGCTAGAAGCCGCATGTCCACACACCGTTTCTTGTGCTGATATCGTTGGCATTGCCGCAAGAGATGTAGTGATCATGGTATGTCCGTTTTGGAATGTGCTAAAAGGAAGGAAAGACGGAGGGGTGTCGAAAGCTAATGAGACCATCAATTTACCAGCTCCAACATTCAATGTATCCCAATGGATTCAAAGCTTTGCTAAGAGAGGTTTAGGTGTTAAAGATTTGGTTGCTCTATCTGGTGGCCACACTCTAGGGTTCTCACATTGTTCTTCATTCGAATCCCGGCTTCGGAATTTTAGTTCAGTGCACGATGTCGACCCAACCATGAACAATGAATTTGCTCAGAAGCTAAGAAACAAATGCCCTAAACCAAACAGGGATACCACTGCCGGAGAGTTGTTCGATTCAACTTCCTCAACTTTTGATAACAATTACTACAAGCAATTGGTGGCAGGTAAGGGCGTGTTTGGATCTGATCAAGCGTTGTTTAGTGATTACAGGACTAGATGGATTGTTGAGTCGTTTGCCAAGGATCAAACTGTGTTCTTCAAGGAGTTTGCAGGTTCGATGGTAAATCTTGGAAATGTTGGGCTAATTGAGGATGGTGAAGTGAGACTGAATTGCCGTGTGGTGAATTGA

Protein Analysis

288

Amino Acids

31.64

Weight (kDa)

7.55

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 9 - 253 8.1e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51890
fragaria_vesca FvH4_7g28760
malus_domestica MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica Prupe.2G287900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376321
rosa_laevigata RLG00000026612
rosa_multiflora Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii Rroxscaffold_4G00282210
rosa_rugosa Rorug01G0395600
rosa_samantha Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana Rw1G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
Acc36I ACCTGC 2 cut(s) 668, 776
AccB1I GGYRCC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 540
AciI CCGC 3 cut(s) 147, 237, 282
AclWI GGATC 2 cut(s) 703, 765
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 2 cut(s) 517, 560
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 2 cut(s) 33, 513
AgsI TTSAA 4 cut(s) 394, 413, 633, 775
AloI GAACNNNNNNTCC 2 cut(s) 508, 540
AluBI AGCT 5 cut(s) 229, 359, 383, 417, 574
AluI AGCT 5 cut(s) 229, 359, 383, 417, 574
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 359, 832
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 2 cut(s) 703, 765
AoxI GGCC 2 cut(s) 172, 466
ApaLI GTGCAC 1 cut(s) 530
ApoI RAATTY 2 cut(s) 517, 560
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 842
AsuII TTCGAA 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 534
BalI TGGCCA 1 cut(s) 468
BanI GGYRCC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 534
BccI CCATC 6 cut(s) 36, 164, 377, 726, 787, 821
BceAI ACGGC 1 cut(s) 834
BciVI GTATCC 2 cut(s) 409, 598
BclI TGATCA 2 cut(s) 297, 700
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 359, 832
BfaI CTAG 4 cut(s) 137, 230, 476, 729
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 2 cut(s) 668, 776
BfuI GTATCC 2 cut(s) 409, 598
BisI GCNGC 2 cut(s) 237, 282
BlsI GCNGC 2 cut(s) 238, 283
Bme1390I CCNGG 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 3 cut(s) 107, 112, 205
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 508
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 753
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 513
Bse3DI GCAATG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 753
BseGI GGATG 3 cut(s) 42, 122, 832
BseLI CCNNNNNNNGG 2 cut(s) 33, 513
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 201, 581
BseSI GKGCMC 1 cut(s) 534
BshFI GGCC 2 cut(s) 174, 468
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 2 cut(s) 508, 615
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 33, 513
BsmAI GTCTC 2 cut(s) 359, 832
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 2 cut(s) 174, 468
Bso31I GGTCTC 1 cut(s) 359
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 5 cut(s) 194, 297, 695, 700, 757
BspACI CCGC 3 cut(s) 147, 237, 282
BspANI GGCC 2 cut(s) 174, 468
BspCNI CTCAG 2 cut(s) 200, 580
BspLI GGNNCC 1 cut(s) 67
BspMI ACCTGC 2 cut(s) 668, 776
BspPI GGATC 2 cut(s) 703, 765
BspT104I TTCGAA 1 cut(s) 501
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 753
BssMI GATC 5 cut(s) 194, 297, 695, 700, 757
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 753
Bst4CI ACNGT 3 cut(s) 78, 253, 766
BstACI GRCGYC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 501
BstDEI CTNAG 5 cut(s) 32, 187, 423, 567, 575
BstF5I GGATG 3 cut(s) 42, 122, 832
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 5 cut(s) 197, 300, 698, 703, 760
BstMAI GTCTC 2 cut(s) 359, 832
BstMBI GATC 5 cut(s) 194, 297, 695, 700, 757
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 506
BstSLI GKGCMC 1 cut(s) 534
BstX2I RGATCY 1 cut(s) 695
BstYI RGATCY 1 cut(s) 695
BsuI GTATCC 2 cut(s) 409, 598
BsuRI GGCC 2 cut(s) 174, 468
BtgZI GCGATG 1 cut(s) 135
BtsCI GGATG 3 cut(s) 42, 122, 832
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 3 cut(s) 74, 534, 609
BveI ACCTGC 2 cut(s) 668, 776
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 114
CviAII CATG 7 cut(s) 9, 13, 47, 82, 240, 301, 550
DdeI CTNAG 5 cut(s) 32, 187, 423, 567, 575
DinI GGCGCC 1 cut(s) 67
DpnI GATC 5 cut(s) 196, 299, 697, 702, 759
DpnII GATC 5 cut(s) 194, 297, 695, 700, 757
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 753
Eco31I GGTCTC 1 cut(s) 359
Eco32I GATATC 1 cut(s) 268
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 753
EcoT22I ATGCAT 1 cut(s) 14
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 7 cut(s) 12, 16, 50, 85, 243, 304, 553
FaqI GGGAC 1 cut(s) 10
FatI CATG 7 cut(s) 8, 12, 46, 81, 239, 300, 549
FbaI TGATCA 2 cut(s) 297, 700
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 237, 282
FokI GGATG 3 cut(s) 49, 129, 839
Fsp4HI GCNGC 2 cut(s) 237, 282
FspBI CTAG 4 cut(s) 137, 230, 476, 729
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 237, 282
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 174, 468
HapII CCGG 2 cut(s) 508, 615
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 7 cut(s) 12, 16, 50, 85, 243, 304, 553
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 5 cut(s) 140, 409, 503, 629, 743
HpaII CCGG 2 cut(s) 508, 615
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 3 cut(s) 245, 532, 541
Hpy188I TCNGA 4 cut(s) 194, 516, 570, 700
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 3 cut(s) 245, 532, 541
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 3 cut(s) 78, 253, 766
HpyCH4V TGCA 3 cut(s) 12, 532, 785
HpyF3I CTNAG 5 cut(s) 32, 187, 423, 567, 575
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 7 cut(s) 12, 16, 50, 85, 243, 304, 553
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
Ksp22I TGATCA 2 cut(s) 297, 700
Kzo9I GATC 5 cut(s) 194, 297, 695, 700, 757
LmnI GCTCC 1 cut(s) 388
LweI GCATC 3 cut(s) 107, 112, 205
MaeI CTAG 4 cut(s) 137, 230, 476, 729
MalI GATC 5 cut(s) 196, 299, 697, 702, 759
MboI GATC 5 cut(s) 194, 297, 695, 700, 757
MboII GAAGA 3 cut(s) 34, 486, 763
MfeI CAATTG 1 cut(s) 668
MflI RGATCY 1 cut(s) 695
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 8 cut(s) 373, 517, 560, 655, 668, 819, 844, 859
MluNI TGGCCA 1 cut(s) 468
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 2 cut(s) 134, 752
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 5 cut(s) 186, 338, 422, 649, 817
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 1 cut(s) 14
MscI TGGCCA 1 cut(s) 468
MseI TTAA 1 cut(s) 441
Msp20I TGGCCA 1 cut(s) 468
MspI CCGG 2 cut(s) 508, 615
MspR9I CCNGG 1 cut(s) 508
MunI CAATTG 1 cut(s) 668
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 1 cut(s) 508
NdeII GATC 5 cut(s) 194, 297, 695, 700, 757
NlaIII CATG 7 cut(s) 12, 16, 50, 85, 243, 304, 553
NlaIV GGNNCC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 1 cut(s) 243
NspV TTCGAA 1 cut(s) 501
PfeI GAWTC 3 cut(s) 409, 503, 629
PkrI GCNGC 2 cut(s) 238, 283
PleI GAGTC 2 cut(s) 134, 751
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 2 cut(s) 134, 751
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 695
SalI GTCGAC 1 cut(s) 539
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 2 cut(s) 237, 282
Sau3AI GATC 5 cut(s) 194, 297, 695, 700, 757
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 134, 752
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 1 cut(s) 534
SetI ASST 9 cut(s) 231, 361, 385, 419, 433, 439, 576, 682, 790
SfaNI GCATC 3 cut(s) 107, 112, 205
SfoI GGCGCC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 8 cut(s) 373, 517, 560, 655, 668, 819, 844, 859
SsiI CCGC 3 cut(s) 147, 237, 282
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 4 cut(s) 137, 230, 476, 729
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 3 cut(s) 78, 253, 766
TaqI TCGA 5 cut(s) 353, 501, 540, 627, 791
TasI AATT 8 cut(s) 373, 517, 560, 655, 668, 819, 844, 859
TauI GCSGC 2 cut(s) 239, 284
TfiI GAWTC 3 cut(s) 409, 503, 629
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 3 cut(s) 81, 534, 616
TspDTI ATGAA 5 cut(s) 46, 70, 486, 566, 573
TspGWI ACGGA 2 cut(s) 300, 357
TspRI CASTG 3 cut(s) 81, 534, 616
VneI GTGCAC 1 cut(s) 530
XapI RAATTY 2 cut(s) 517, 560
XceI RCATGY 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 4 cut(s) 137, 230, 476, 729
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.