Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014242

Physical Location & Seq

Genomic Coordinates Forward (+)

4282549 .. 4283920

Gene Structure 1372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTGCATTTGCACCAAAAACCATCGTATTCTGCACATTTTTCCTTCTTTTAACTACGCTTCCACAATCAAGAGCAGCACTCGATGCTCACTATTATGATAAAACATGTCCACAAGTCGAGAAAATCATATTTCAGACAGTATACAATGCTTCCATGCATGACCCTAAAGTCCCAGCTCGTATCTTAAGGATGTTCTTCCACGATTGCTTTATAAGGGGTTGTGATGCGTCCTTGCTGCTCGACTCAACACCAGGGAACCAAGCAGAGAAAGATGGCCCTCCCAATATTTCAGTCCGATCATTCTACGTGATCGAGGAGGCCAAAGCTAAGCTAGAAGCCGCATGTCCACACACAGTTTCATGCGCCGATATAATAGGCATTGCTGCAAGAGATGTAGTAACCATGTCTCGAGGCCCATATTGGAATGTGCTTAAAGGAAGAAAAGATGGAAGGGTGTCGAGGGCTAACGAGACCATCAACCTACCGGCTCCAACCTTCAATGTAAGCCAACTGATTCAAAGCTTTGCCAAGAGAGGTTTAGGAGTCAAAGAATTGGTAGCTCTATCCGGTGGCCATACTCTAGGGTTTTCGCATTGTTCTTCCTTCCAAGCCCGTCTTCGCAATTTTAGTTCGGTCCACGATGTCGACCCGACTATGGACAGTGAGTTTGCTCTAAAGCTAAGAAAGCAATGCCCTAAACCAAACAGAGATCACAGCGCTGGGGAGTTGTTGGACTCGACATCCTCGATTTTTGATAATGATTATTACAAGAGATTGATAGGAGGAAAGGGAGTGTTTGGATCGGACCAAGCATTGTTTGGTGATTACAGGACTAAATGGATTGTTGAATCGTATGCCAAAGATCAAAGTTTGTTCTTTAAAGAGTTTGCAGCTTCTATGGTGAAACTAGGTAATGTTGGGGTGATTGAGGATGGAGAAGTGAGACTGAATTGCAGGGTGGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

323

Amino Acids

35.82

Weight (kDa)

8.65

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	47 - 289	1.8e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51890
fragaria_vesca	FvH4_7g28760
malus_domestica	MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica	Prupe.2G287900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376321
rosa_laevigata	RLG00000026612
rosa_multiflora	Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282210
rosa_rugosa	Rorug01G0395600
rosa_samantha	Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana	Rw1G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AasI	GACNNNNNNGTC	1 cut(s)	170
AccI	GTMKAC	2 cut(s)	144, 648
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	811
AcoI	YGGCCR	1 cut(s)	574
AfeI	AGCGCT	1 cut(s)	721
AfiI	CCNNNNNNNGG	1 cut(s)	658
AflII	CTTAAG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	502, 521, 851
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AluBI	AGCT	7 cut(s)	179, 329, 334, 525, 563, 682, 896
AluI	AGCT	7 cut(s)	179, 329, 334, 525, 563, 682, 896
Alw26I	GTCTC	3 cut(s)	414, 467, 940
AlwI	GGATC	1 cut(s)	811
Ama87I	CYCGRG	1 cut(s)	411
Aor51HI	AGCGCT	1 cut(s)	721
AoxI	GGCC	4 cut(s)	277, 321, 415, 574
ApeKI	GCWGC	5 cut(s)	5, 77, 238, 386, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AspLEI	GCGC	2 cut(s)	368, 722
AspS9I	GGNCC	4 cut(s)	278, 416, 637, 808
AsuHPI	GGTGA	3 cut(s)	836, 916, 937
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	2 cut(s)	637, 808
BalI	TGGCCA	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	4 cut(s)	89, 225, 373, 905
BccI	CCATC	5 cut(s)	32, 269, 443, 485, 929
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	3 cut(s)	414, 467, 940
BfaI	CTAG	3 cut(s)	335, 584, 911
BfoI	RGCGCY	1 cut(s)	723
BfrI	CTTAAG	1 cut(s)	187
BisI	GCNGC	6 cut(s)	6, 78, 239, 342, 387, 894
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	6 cut(s)	7, 79, 240, 343, 388, 895
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	637, 808
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	4 cut(s)	278, 416, 637, 808
BmiI	GGNNCC	2 cut(s)	260, 492
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	76, 217
BpiI	GAAGAC	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
Bpu1102I	GCTNAGC	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse118I	RCCGGY	1 cut(s)	487
Bse3DI	GCAATG	2 cut(s)	381, 698
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	198, 743, 940
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMI	GCAATG	2 cut(s)	381, 698
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	89, 225, 373, 905
BseYI	CCCAGC	2 cut(s)	175, 722
BsgI	GTGCAG	1 cut(s)	19
BshFI	GGCC	4 cut(s)	279, 323, 417, 576
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	488, 570
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmAI	GTCTC	3 cut(s)	414, 467, 940
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	4 cut(s)	279, 323, 417, 576
Bso31I	GGTCTC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	299, 312, 712, 803, 865
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	4 cut(s)	279, 323, 417, 576
BspLI	GGNNCC	2 cut(s)	260, 492
BspPI	GGATC	1 cut(s)	811
BspTI	CTTAAG	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	381, 698
BsrFI	RCCGGY	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	5 cut(s)	299, 312, 712, 803, 865
BssNAI	GTATAC	1 cut(s)	145
Bst1107I	GTATAC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	142, 358, 665
BstAFI	CTTAAG	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	330, 683
BstF5I	GGATG	3 cut(s)	198, 743, 940
BstH2I	RGCGCY	1 cut(s)	723
BstHHI	GCGC	2 cut(s)	368, 722
BstKTI	GATC	5 cut(s)	302, 315, 715, 806, 868
BstMAI	GTCTC	3 cut(s)	414, 467, 940
BstMBI	GATC	5 cut(s)	299, 312, 712, 803, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 86, 688
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	2 cut(s)	111, 348
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	4 cut(s)	89, 225, 373, 905
BstV2I	GAAGAC	1 cut(s)	611
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	4 cut(s)	279, 323, 417, 576
BtsCI	GGATG	3 cut(s)	198, 743, 940
BtsIMutI	CAGTG	1 cut(s)	670
CfoI	GCGC	2 cut(s)	368, 722
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	4 cut(s)	278, 416, 637, 808
CseI	GACGC	1 cut(s)	219
CviAII	CATG	6 cut(s)	108, 157, 161, 345, 363, 406
DdeI	CTNAG	2 cut(s)	330, 683
DpnI	GATC	5 cut(s)	301, 314, 714, 805, 867
DpnII	GATC	5 cut(s)	299, 312, 712, 803, 865
DraI	TTTAAA	1 cut(s)	883
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	637, 808
Eco47III	AGCGCT	1 cut(s)	721
Eco88I	CYCGRG	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	6 cut(s)	111, 160, 164, 348, 366, 409
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	6 cut(s)	107, 156, 160, 344, 362, 405
FblI	GTMKAC	2 cut(s)	144, 648
Fnu4HI	GCNGC	6 cut(s)	6, 78, 239, 342, 387, 894
FokI	GGATG	3 cut(s)	205, 730, 947
Fsp4HI	GCNGC	6 cut(s)	6, 78, 239, 342, 387, 894
FspBI	CTAG	3 cut(s)	335, 584, 911
GlaI	GCGC	2 cut(s)	367, 721
GluI	GCNGC	6 cut(s)	6, 78, 239, 342, 387, 894
GsaI	CCCAGC	2 cut(s)	179, 726
HaeII	RGCGCY	1 cut(s)	723
HaeIII	GGCC	4 cut(s)	279, 323, 417, 576
HapII	CCGG	2 cut(s)	488, 570
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	2 cut(s)	368, 722
Hin1II	CATG	6 cut(s)	111, 160, 164, 348, 366, 409
Hin6I	GCGC	2 cut(s)	366, 720
HinP1I	GCGC	2 cut(s)	366, 720
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	5 cut(s)	245, 517, 546, 737, 851
HpaII	CCGG	2 cut(s)	488, 570
HphI	GGTGA	3 cut(s)	836, 916, 937
Hpy166II	GTNNAC	6 cut(s)	113, 145, 350, 640, 649, 967
Hpy188I	TCNGA	3 cut(s)	138, 299, 808
Hpy188III	TCNNGA	3 cut(s)	72, 121, 411
Hpy8I	GTNNAC	6 cut(s)	113, 145, 350, 640, 649, 967
HpyAV	CCTTC	4 cut(s)	56, 447, 508, 616
HpyCH4III	ACNGT	3 cut(s)	142, 358, 665
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	7 cut(s)	8, 14, 36, 160, 389, 893, 957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 86, 688
HpyF3I	CTNAG	2 cut(s)	330, 683
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	6 cut(s)	111, 160, 164, 348, 366, 409
HspAI	GCGC	2 cut(s)	366, 720
Kzo9I	GATC	5 cut(s)	299, 312, 712, 803, 865
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	8 cut(s)	189, 240, 267, 501, 583, 708, 817, 943
Lsp1109I	GCAGC	4 cut(s)	89, 225, 373, 905
LweI	GCATC	2 cut(s)	76, 217
MaeI	CTAG	3 cut(s)	335, 584, 911
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	5 cut(s)	301, 314, 714, 805, 867
MboI	GATC	5 cut(s)	299, 312, 712, 803, 865
MboII	GAAGA	4 cut(s)	190, 453, 594, 611
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	3 cut(s)	554, 625, 952
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	3 cut(s)	239, 555, 731
MmeI	TCCRAC	2 cut(s)	518, 714
MnlI	CCTC	9 cut(s)	291, 310, 313, 407, 456, 530, 757, 779, 925
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	4 cut(s)	53, 188, 435, 882
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	576
MspCI	CTTAAG	1 cut(s)	187
MspI	CCGG	2 cut(s)	488, 570
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	11, 86, 688
NdeII	GATC	5 cut(s)	299, 312, 712, 803, 865
NlaIII	CATG	6 cut(s)	111, 160, 164, 348, 366, 409
NlaIV	GGNNCC	2 cut(s)	260, 492
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	2 cut(s)	111, 348
PaeR7I	CTCGAG	1 cut(s)	411
PciI	ACATGT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	517, 851
PkrI	GCNGC	6 cut(s)	7, 79, 240, 343, 388, 895
PleI	GAGTC	3 cut(s)	239, 554, 731
PpsI	GAGTC	3 cut(s)	239, 554, 731
Ppu21I	YACGTR	1 cut(s)	310
PscI	ACATGT	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	253
PspFI	CCCAGC	2 cut(s)	175, 722
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	260, 492
PspPI	GGNCC	4 cut(s)	278, 416, 637, 808
RseI	CAYNNNNRTG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	647
SaqAI	TTAA	4 cut(s)	53, 188, 435, 882
SatI	GCNGC	6 cut(s)	6, 78, 239, 342, 387, 894
Sau3AI	GATC	5 cut(s)	299, 312, 712, 803, 865
Sau96I	GGNCC	4 cut(s)	278, 416, 637, 808
SchI	GAGTC	3 cut(s)	239, 555, 731
ScrFI	CCNGG	1 cut(s)	255
SfaNI	GCATC	2 cut(s)	76, 217
Sfr274I	CTCGAG	1 cut(s)	411
SinI	GGWCC	2 cut(s)	637, 808
SlaI	CTCGAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	187, 411
SmoI	CTYRAG	2 cut(s)	187, 411
Sse9I	AATT	3 cut(s)	554, 625, 952
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	3 cut(s)	335, 584, 911
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	142, 358, 665
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	9 cut(s)	84, 120, 243, 315, 412, 461, 648, 740, 749
TaqII	GACCGA	1 cut(s)	625
TasI	AATT	3 cut(s)	554, 625, 952
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	517, 851
Tru1I	TTAA	4 cut(s)	53, 188, 435, 882
Tru9I	TTAA	4 cut(s)	53, 188, 435, 882
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	5 cut(s)	5, 77, 238, 386, 893
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	670
Vha464I	CTTAAG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	637, 808
XceI	RCATGY	2 cut(s)	111, 348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XhoI	CTCGAG	1 cut(s)	411
XmiI	GTMKAC	2 cut(s)	144, 648
XspI	CTAG	3 cut(s)	335, 584, 911
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.