FvH4_7g28760

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014242
Physical Location & Seq
Reverse (-)
21281275 .. 21282859
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28760.t1

Sequence Viewer

Length: 972 bp
ATGGCTGCATTTGCACCAAAAACCATTCTATTCTGCACATTTTTGCTTCTTTTACGTACTCTTCCACAATCAAGAGCAGCACTCGATACTCACTATTATGATAAAACATGTCCACAAGCCGAGAAAATCATATTTCAGACGGTATACAATGCTTCCATGCATGACCCTAAAGTCCCAGCTCGCATCTTAAGGATGTTCTTCCATGATTGCTTTATAAGGGGTTGTGATGCGTCCTTGCTGCTCGACTCAACCCCAGGGAACCAAGCAGAGAAAGATGGCCCTCCCAACATTTCAGTCCGATCATTCTACGTGATCGACGAGGCCAAAGCTAAGCTAGAAGCCGCATGTCCACATATCGTTTCTTGTGCCGATATCATAGGCATTGCTGCAAGAGATGTAGTAACCATGTCTCGAGGGCCATATTGGACTGTGCTAAAAGGAAGAAAAGATGGAAGGGTGTCGAGGGCAAACGAGACCATCAACCTACCAGCTCCAACCTTCAACGTAAGCCAACTCATTCAAAGCTTTGCCAAGAGAGGTTTAGGAGTCAAGGAATTGGTAGCTCTATCCGGTGGCCATACTCTAGGGTTTTCGCATTGTTCTTCCTTCGAAGCTCGTCTTCGCAATTTTAGTCCGGTCCATGATGTTGACCCGACTATGGACAGTGAGTTTGCTCTAAAGCTAAGAAAACAATGCCCTAAACCAAACAGGGATCACAGCGCTGGGGAGTTGTTGGACTCGACGTCCTCGATCTTCGATAATGATTATTACAAGCAATTGATAGGAGGAAAGGGAGTGTTTGGATCGGACCAAGCATTGTTTCGTGATTTCAGGACTAAATGGATTGTGGAATCGTTTGCCAAAGATCAAAGTTTGTTCTTTAAAGAGTTTGCTGCTTCTATGGTGAAGCTAGGCAATGTTGGGGTGATAGAGAATGGAGAAGTGAGAGTGAATTGCAGAGTGGTAAACTGA

Protein Analysis

324

Amino Acids

35.88

Weight (kDa)

8.79

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 289 3.7e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51890
fragaria_vesca FvH4_7g28760
malus_domestica MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica Prupe.2G287900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376321
rosa_laevigata RLG00000026612
rosa_multiflora Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii Rroxscaffold_4G00282210
rosa_rugosa Rorug01G0395600
rosa_samantha Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana Rw1G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 746
AccI GTMKAC 1 cut(s) 144
AciI CCGC 1 cut(s) 342
AclWI GGATC 2 cut(s) 720, 811
AcoI YGGCCR 1 cut(s) 574
AcyI GRCGYC 1 cut(s) 743
AfaI GTAC 1 cut(s) 58
AfeI AGCGCT 1 cut(s) 721
AfiI CCNNNNNNNGG 1 cut(s) 658
AflII CTTAAG 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 2 cut(s) 502, 521
AhdI GACNNNNNGTC 1 cut(s) 742
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 9 cut(s) 179, 329, 334, 491, 525, 563, 614, 682, 910
AluI AGCT 9 cut(s) 179, 329, 334, 491, 525, 563, 614, 682, 910
Alw26I GTCTC 2 cut(s) 414, 467
AlwI GGATC 2 cut(s) 720, 811
Ama87I CYCGRG 1 cut(s) 411
Aor51HI AGCGCT 1 cut(s) 721
AoxI GGCC 4 cut(s) 277, 321, 416, 574
ApeKI GCWGC 5 cut(s) 5, 77, 238, 386, 893
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 4 cut(s) 278, 416, 637, 808
AsuHPI GGTGA 2 cut(s) 916, 937
AsuII TTCGAA 1 cut(s) 609
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 2 cut(s) 637, 808
BalI TGGCCA 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 611
BbvI GCAGC 4 cut(s) 89, 225, 373, 880
BccI CCATC 3 cut(s) 269, 443, 485
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 414, 467
BfaI CTAG 3 cut(s) 335, 584, 911
BfoI RGCGCY 1 cut(s) 723
BfrI CTTAAG 1 cut(s) 187
BisI GCNGC 6 cut(s) 6, 78, 239, 342, 387, 894
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 6 cut(s) 7, 79, 240, 343, 388, 895
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 637, 808
BmeRI GACNNNNNGTC 1 cut(s) 742
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 4 cut(s) 278, 416, 637, 808
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 2 cut(s) 192, 217
BpiI GAAGAC 1 cut(s) 611
BplI GAGNNNNNCTC 2 cut(s) 66, 98
Bpu1102I GCTNAGC 1 cut(s) 330
Bpu14I TTCGAA 1 cut(s) 609
BsaAI YACGTR 2 cut(s) 56, 310
BsaHI GRCGYC 1 cut(s) 743
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 253, 254
BsaWI WCCGGW 2 cut(s) 569, 634
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse3DI GCAATG 2 cut(s) 381, 922
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 253, 254
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMI GCAATG 2 cut(s) 381, 922
BseXI GCAGC 4 cut(s) 89, 225, 373, 880
BseYI CCCAGC 2 cut(s) 175, 722
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 4 cut(s) 279, 323, 418, 576
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 570, 635
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 2 cut(s) 414, 467
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 4 cut(s) 279, 323, 418, 576
Bso31I GGTCTC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 609
Bsp143I GATC 6 cut(s) 299, 312, 712, 750, 803, 865
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 1 cut(s) 342
BspANI GGCC 4 cut(s) 279, 323, 418, 576
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 2 cut(s) 720, 811
BspT104I TTCGAA 1 cut(s) 609
BspTI CTTAAG 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 467
BsrDI GCAATG 2 cut(s) 381, 922
BssECI CCNNGG 2 cut(s) 253, 254
BssMI GATC 6 cut(s) 299, 312, 712, 750, 803, 865
BssNAI GTATAC 1 cut(s) 145
BssNI GRCGYC 1 cut(s) 743
Bst1107I GTATAC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 3 cut(s) 142, 430, 665
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 743
BstAFI CTTAAG 1 cut(s) 187
BstBAI YACGTR 2 cut(s) 56, 310
BstBI TTCGAA 1 cut(s) 609
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 330, 683
BstF5I GGATG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 723
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 6 cut(s) 302, 315, 715, 753, 806, 868
BstMAI GTCTC 2 cut(s) 414, 467
BstMBI GATC 6 cut(s) 299, 312, 712, 750, 803, 865
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 2 cut(s) 111, 348
BstSCI CCNGG 1 cut(s) 253
BstSNI TACGTA 1 cut(s) 56
BstV1I GCAGC 4 cut(s) 89, 225, 373, 880
BstV2I GAAGAC 1 cut(s) 611
BstZ17I GTATAC 1 cut(s) 145
BsuRI GGCC 4 cut(s) 279, 323, 418, 576
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 670
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 722
Cfr13I GGNCC 4 cut(s) 278, 416, 637, 808
CseI GACGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 57
CviAII CATG 7 cut(s) 108, 157, 161, 203, 345, 406, 641
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 330, 683
DpnI GATC 6 cut(s) 301, 314, 714, 752, 805, 867
DpnII GATC 6 cut(s) 299, 312, 712, 750, 803, 865
DraI TTTAAA 1 cut(s) 883
DrdI GACNNNNNNGTC 1 cut(s) 170
DriI GACNNNNNGTC 1 cut(s) 742
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 66
Eco105I TACGTA 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 467
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 637, 808
Eco47III AGCGCT 1 cut(s) 721
Eco88I CYCGRG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 253
EcoRV GATATC 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 162
FaeI CATG 7 cut(s) 111, 160, 164, 206, 348, 409, 644
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FaqI GGGAC 1 cut(s) 158
FatI CATG 7 cut(s) 107, 156, 160, 202, 344, 405, 640
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 6 cut(s) 6, 78, 239, 342, 387, 894
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 6 cut(s) 6, 78, 239, 342, 387, 894
FspBI CTAG 3 cut(s) 335, 584, 911
GlaI GCGC 1 cut(s) 721
GluI GCNGC 6 cut(s) 6, 78, 239, 342, 387, 894
GsaI CCCAGC 2 cut(s) 179, 726
HaeII RGCGCY 1 cut(s) 723
HaeIII GGCC 4 cut(s) 279, 323, 418, 576
HapII CCGG 2 cut(s) 570, 635
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 743
Hin1II CATG 7 cut(s) 111, 160, 164, 206, 348, 409, 644
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 4 cut(s) 245, 546, 737, 851
HpaII CCGG 2 cut(s) 570, 635
HphI GGTGA 2 cut(s) 916, 937
Hpy166II GTNNAC 5 cut(s) 113, 145, 350, 649, 967
Hpy188I TCNGA 3 cut(s) 138, 299, 808
Hpy188III TCNNGA 4 cut(s) 72, 411, 824, 832
Hpy8I GTNNAC 5 cut(s) 113, 145, 350, 649, 967
Hpy99I CGWCG 2 cut(s) 320, 745
HpyAV CCTTC 3 cut(s) 447, 508, 616
HpyCH4III ACNGT 3 cut(s) 142, 430, 665
HpyCH4IV ACGT 4 cut(s) 55, 309, 504, 743
HpyCH4V TGCA 6 cut(s) 8, 14, 36, 160, 389, 957
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 330, 683
HpySE526I ACGT 4 cut(s) 55, 309, 504, 743
Hsp92I GRCGYC 1 cut(s) 743
Hsp92II CATG 7 cut(s) 111, 160, 164, 206, 348, 409, 644
HspAI GCGC 1 cut(s) 720
Kzo9I GATC 6 cut(s) 299, 312, 712, 750, 803, 865
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 9 cut(s) 189, 240, 267, 501, 583, 648, 694, 708, 817
Lsp1109I GCAGC 4 cut(s) 89, 225, 373, 880
LweI GCATC 2 cut(s) 192, 217
MaeI CTAG 3 cut(s) 335, 584, 911
MaeII ACGT 4 cut(s) 55, 309, 504, 743
MaeIII GTNAC 1 cut(s) 400
MalI GATC 6 cut(s) 301, 314, 714, 752, 805, 867
MboI GATC 6 cut(s) 299, 312, 712, 750, 803, 865
MboII GAAGA 6 cut(s) 53, 190, 453, 594, 611, 745
MfeI CAATTG 1 cut(s) 776
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 4 cut(s) 554, 625, 776, 952
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 3 cut(s) 239, 555, 731
MmeI TCCRAC 2 cut(s) 518, 714
MnlI CCTC 7 cut(s) 291, 313, 407, 456, 530, 757, 779
Mox20I TGGCCA 1 cut(s) 576
Mph1103I ATGCAT 1 cut(s) 162
MscI TGGCCA 1 cut(s) 576
MseI TTAA 2 cut(s) 188, 882
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 576
MspCI CTTAAG 1 cut(s) 187
MspI CCGG 2 cut(s) 570, 635
MspR9I CCNGG 1 cut(s) 255
MunI CAATTG 1 cut(s) 776
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 6 cut(s) 299, 312, 712, 750, 803, 865
NlaIII CATG 7 cut(s) 111, 160, 164, 206, 348, 409, 644
NlaIV GGNNCC 1 cut(s) 260
NmeAIII GCCGAG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 162
NspI RCATGY 2 cut(s) 111, 348
NspV TTCGAA 1 cut(s) 609
PaeR7I CTCGAG 1 cut(s) 411
PasI CCCWGGG 1 cut(s) 254
PciI ACATGT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 746
PfeI GAWTC 1 cut(s) 851
PkrI GCNGC 6 cut(s) 7, 79, 240, 343, 388, 895
PleI GAGTC 3 cut(s) 239, 554, 731
PpsI GAGTC 3 cut(s) 239, 554, 731
Ppu21I YACGTR 2 cut(s) 56, 310
PscI ACATGT 1 cut(s) 107
PsiI TTATAA 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 253
PspFI CCCAGC 2 cut(s) 175, 722
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 4 cut(s) 278, 416, 637, 808
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 188, 882
SatI GCNGC 6 cut(s) 6, 78, 239, 342, 387, 894
Sau3AI GATC 6 cut(s) 299, 312, 712, 750, 803, 865
Sau96I GGNCC 4 cut(s) 278, 416, 637, 808
SchI GAGTC 3 cut(s) 239, 555, 731
ScrFI CCNGG 1 cut(s) 255
SfaNI GCATC 2 cut(s) 192, 217
Sfr274I CTCGAG 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 609
SinI GGWCC 2 cut(s) 637, 808
SlaI CTCGAG 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 187, 411
SmoI CTYRAG 2 cut(s) 187, 411
SnaBI TACGTA 1 cut(s) 56
Sse9I AATT 4 cut(s) 554, 625, 776, 952
SsiI CCGC 1 cut(s) 342
SspMI CTAG 3 cut(s) 335, 584, 911
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 142, 430, 665
TaiI ACGT 4 cut(s) 58, 312, 507, 746
TaqI TCGA 9 cut(s) 84, 243, 315, 412, 461, 609, 740, 749, 756
TasI AATT 4 cut(s) 554, 625, 776, 952
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 1 cut(s) 851
Tru1I TTAA 2 cut(s) 188, 882
Tru9I TTAA 2 cut(s) 188, 882
TscAI CASTG 1 cut(s) 670
TseI GCWGC 5 cut(s) 5, 77, 238, 386, 893
TspRI CASTG 1 cut(s) 670
Vha464I CTTAAG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 637, 808
XceI RCATGY 2 cut(s) 111, 348
XhoI CTCGAG 1 cut(s) 411
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 3 cut(s) 335, 584, 911
ZraI GACGTC 1 cut(s) 744
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.