MD01G1194000.v1.1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0014242
Physical Location & Seq
Reverse (-)
29285647 .. 29287508
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1194000.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGCTGTGTTTGCACCAAAAACAATGTTCTTCTTCTTCCTCCATGCATTACTGTTACTGCTTTCAACTAGGTTTTCACAGTCAAAAGCGGCGCTCAGTGCTCAGTACTATGATCAAACGTGTCCACAAGCTGAGAAAATTATATTACAAGCGGTGTATAATGCTTCCATGCATGACCCTAAAGTCCCAGCTCGCATCTTAAGGATGTTCTTCCATGATTGTTTCATAAGGGGATGCGATGCGTCGTTGCTGCTAGACTCCACCGCAGGAAACCAAGCAGAGAAAGACGGCCCTCCCAATATCTCAGTCCGATCATTCTACGTGATTGACGATGCCAAAGCCAAGCTAGAAGCCGCATGTCCACACACTGTTTCTTGTGCTGATATCGTCGGCATTGCTGCAAGAGATGTAGTGATCATGTCCGGAGGTCCGTTTTGGAATGTGCTAAAGGGGAGGAAAGACGGAAGGGTGTCGAGAGCTAATGAGACCATCAACTTACCAGCTCCAACTTTCAACATGTCCCAATTGATTCAAAGCTTTGCTAAGAGAGGTTTAGGTGTTAAAGATTTGGTTGCTCTATCTGGCGGCCACACTCTAGGGTTCTCACATTGTTCTTCATTTGAATCCCGGCTTCGGAATTTTAGTTCAGTGCACGACGTGGACCCAACCATGAACAAAGAATTTGCTCAGAAGCTAAGAACCAAATGCTCTAAGCCAAACAGGGATATCACTGCCGGAGAGTTGTTGGACTCAACTTCCTCAACTTTTGATAACAATTACTACAAGCAATTGGTGGCAGGTAAGGGCGTGTTTGGATCGGATCAAGCGTTGTTTAGCGATTACAGGACTGGATGGATTGTTGAGTCGTTTGCCAAGGATCAAAGTGTGTTCTTCAAGGAGTTTGCAGCTTCAATGGTAAATCTTGGAAATGTTGGGGTGATTGAGGATGGTGGTGAAGTGAGACTTAATTGCCGTGTGGTGAATTGA

Protein Analysis

329

Amino Acids

36.07

Weight (kDa)

8.56

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 51 - 293 1.6e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51890
fragaria_vesca FvH4_7g28760
malus_domestica MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica Prupe.2G287900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376321
rosa_laevigata RLG00000026612
rosa_multiflora Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii Rroxscaffold_4G00282210
rosa_rugosa Rorug01G0395600
rosa_samantha Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana Rw1G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 788
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 5 cut(s) 89, 152, 264, 354, 585
AclWI GGATC 3 cut(s) 823, 828, 885
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 2 cut(s) 637, 680
AdeI CACNNNGTG 1 cut(s) 658
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 633
AflII CTTAAG 1 cut(s) 199
AflIII ACRYGT 2 cut(s) 119, 516
AgsI TTSAA 6 cut(s) 66, 514, 533, 623, 895, 912
AjiI CACGTC 1 cut(s) 658
AloI GAACNNNNNNTCC 2 cut(s) 628, 660
AluBI AGCT 8 cut(s) 131, 191, 346, 479, 503, 537, 694, 908
AluI AGCT 8 cut(s) 131, 191, 346, 479, 503, 537, 694, 908
Alw21I GWGCWC 2 cut(s) 103, 654
Alw26I GTCTC 2 cut(s) 479, 955
Alw44I GTGCAC 1 cut(s) 650
AlwI GGATC 3 cut(s) 823, 828, 885
Aor13HI TCCGGA 1 cut(s) 422
AoxI GGCC 2 cut(s) 289, 586
ApaLI GTGCAC 1 cut(s) 650
ApeKI GCWGC 3 cut(s) 250, 398, 905
ApoI RAATTY 2 cut(s) 637, 680
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 3 cut(s) 290, 428, 661
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 2 cut(s) 949, 965
AvaII GGWCC 2 cut(s) 428, 661
BaeGI GKGCMC 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 103, 654
BbvI GCAGC 3 cut(s) 237, 385, 917
BccI CCATC 3 cut(s) 497, 846, 941
BceAI ACGGC 2 cut(s) 304, 957
BclI TGATCA 2 cut(s) 112, 414
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 479, 955
BfaI CTAG 4 cut(s) 69, 254, 347, 596
BfoI RGCGCY 1 cut(s) 95
BfrI CTTAAG 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 788
BisI GCNGC 6 cut(s) 90, 251, 354, 399, 586, 906
BlsI GCNGC 6 cut(s) 91, 252, 355, 400, 587, 907
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 628
Bme18I GGWCC 2 cut(s) 428, 661
BmgBI CACGTC 1 cut(s) 658
BmgT120I GGNCC 3 cut(s) 290, 428, 661
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 1 cut(s) 628
BmsI GCATC 4 cut(s) 204, 224, 229, 322
BpuMI CCSGG 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 873
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 633
Bse1I ACTGG 1 cut(s) 853
Bse3DI GCAATG 1 cut(s) 393
BseAI TCCGGA 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 873
BseGI GGATG 4 cut(s) 210, 239, 857, 952
BseLI CCNNNNNNNGG 1 cut(s) 633
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 5 cut(s) 109, 116, 123, 318, 701
BseNI ACTGG 1 cut(s) 853
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 3 cut(s) 237, 385, 917
BseYI CCCAGC 1 cut(s) 187
BshFI GGCC 2 cut(s) 291, 588
BsiHKAI GWGCWC 2 cut(s) 103, 654
BsiSI CCGG 3 cut(s) 423, 628, 735
BslFI GGGAC 2 cut(s) 170, 505
BslI CCNNNNNNNGG 1 cut(s) 633
BsmAI GTCTC 2 cut(s) 479, 955
BsmFI GGGAC 2 cut(s) 170, 505
BsnI GGCC 2 cut(s) 291, 588
Bso31I GGTCTC 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 103, 654
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 6 cut(s) 112, 311, 414, 815, 820, 877
BspACI CCGC 5 cut(s) 89, 152, 264, 354, 585
BspANI GGCC 2 cut(s) 291, 588
BspCNI CTCAG 5 cut(s) 108, 115, 124, 317, 700
BspEI TCCGGA 1 cut(s) 422
BspLI GGNNCC 1 cut(s) 663
BspMI ACCTGC 1 cut(s) 788
BspPI GGATC 3 cut(s) 823, 828, 885
BspTI CTTAAG 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 853
BssECI CCNNGG 1 cut(s) 873
BssMI GATC 6 cut(s) 112, 311, 414, 815, 820, 877
BssT1I CCWWGG 1 cut(s) 873
Bst4CI ACNGT 3 cut(s) 54, 81, 370
BstAFI CTTAAG 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 8 cut(s) 95, 102, 132, 304, 543, 687, 695, 711
BstF5I GGATG 4 cut(s) 210, 239, 857, 952
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 6 cut(s) 115, 314, 417, 818, 823, 880
BstMAI GTCTC 2 cut(s) 479, 955
BstMBI GATC 6 cut(s) 112, 311, 414, 815, 820, 877
BstMWI GCNNNNNNNGC 2 cut(s) 11, 98
BstNSI RCATGY 2 cut(s) 360, 520
BstSCI CCNGG 1 cut(s) 626
BstSLI GKGCMC 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 237, 385, 917
BsuRI GGCC 2 cut(s) 291, 588
BtgZI GCGATG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 658
BtsCI GGATG 4 cut(s) 210, 239, 857, 952
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 4 cut(s) 103, 366, 654, 729
BveI ACCTGC 1 cut(s) 788
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 290, 428, 661
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 106
CviAII CATG 8 cut(s) 44, 169, 173, 215, 357, 418, 517, 670
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 8 cut(s) 95, 102, 132, 304, 543, 687, 695, 711
DpnI GATC 6 cut(s) 114, 313, 416, 817, 822, 879
DpnII GATC 6 cut(s) 112, 311, 414, 815, 820, 877
DraIII CACNNNGTG 1 cut(s) 658
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 873
Eco31I GGTCTC 1 cut(s) 479
Eco32I GATATC 2 cut(s) 385, 727
Eco47I GGWCC 2 cut(s) 428, 661
EcoRV GATATC 2 cut(s) 385, 727
EcoT14I CCWWGG 1 cut(s) 873
EcoT22I ATGCAT 2 cut(s) 49, 174
ErhI CCWWGG 1 cut(s) 873
FaeI CATG 8 cut(s) 47, 172, 176, 218, 360, 421, 520, 673
FalI AAGNNNNNCTT 2 cut(s) 948, 980
FaqI GGGAC 2 cut(s) 170, 505
FatI CATG 8 cut(s) 43, 168, 172, 214, 356, 417, 516, 669
FbaI TGATCA 2 cut(s) 112, 414
Fnu4HI GCNGC 6 cut(s) 90, 251, 354, 399, 586, 906
FokI GGATG 4 cut(s) 217, 246, 864, 959
Fsp4HI GCNGC 6 cut(s) 90, 251, 354, 399, 586, 906
FspBI CTAG 4 cut(s) 69, 254, 347, 596
GlaI GCGC 1 cut(s) 93
GluI GCNGC 6 cut(s) 90, 251, 354, 399, 586, 906
GsaI CCCAGC 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 2 cut(s) 291, 588
HapII CCGG 3 cut(s) 423, 628, 735
HgaI GACGC 1 cut(s) 231
HhaI GCGC 1 cut(s) 94
Hin1II CATG 8 cut(s) 47, 172, 176, 218, 360, 421, 520, 673
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 535
HinfI GANTC 5 cut(s) 257, 529, 623, 749, 863
HpaII CCGG 3 cut(s) 423, 628, 735
HphI GGTGA 2 cut(s) 949, 965
Hpy166II GTNNAC 4 cut(s) 125, 362, 652, 661
Hpy188I TCNGA 4 cut(s) 311, 636, 690, 820
Hpy188III TCNNGA 2 cut(s) 423, 474
Hpy8I GTNNAC 4 cut(s) 125, 362, 652, 661
Hpy99I CGWCG 3 cut(s) 247, 392, 659
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 3 cut(s) 54, 81, 370
HpyCH4IV ACGT 3 cut(s) 119, 321, 657
HpyCH4V TGCA 6 cut(s) 14, 47, 172, 401, 652, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 98
HpyF3I CTNAG 8 cut(s) 95, 102, 132, 304, 543, 687, 695, 711
HpySE526I ACGT 3 cut(s) 119, 321, 657
Hsp92II CATG 8 cut(s) 47, 172, 176, 218, 360, 421, 520, 673
HspAI GCGC 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 422
Ksp22I TGATCA 2 cut(s) 112, 414
Kzo9I GATC 6 cut(s) 112, 311, 414, 815, 820, 877
LmnI GCTCC 1 cut(s) 508
Lsp1109I GCAGC 3 cut(s) 237, 385, 917
LweI GCATC 4 cut(s) 204, 224, 229, 322
MaeI CTAG 4 cut(s) 69, 254, 347, 596
MaeII ACGT 3 cut(s) 119, 321, 657
MaeIII GTNAC 1 cut(s) 54
MalI GATC 6 cut(s) 114, 313, 416, 817, 822, 879
MboI GATC 6 cut(s) 112, 311, 414, 815, 820, 877
MboII GAAGA 6 cut(s) 22, 25, 28, 202, 606, 883
MfeI CAATTG 2 cut(s) 524, 788
MhlI GDGCHC 2 cut(s) 103, 654
MluCI AATT 8 cut(s) 138, 524, 637, 680, 775, 788, 967, 982
MlyI GAGTC 3 cut(s) 251, 743, 872
MmeI TCCRAC 2 cut(s) 530, 726
MnlI CCTC 7 cut(s) 50, 303, 419, 447, 542, 769, 937
Mph1103I ATGCAT 2 cut(s) 49, 174
MroI TCCGGA 1 cut(s) 422
MseI TTAA 3 cut(s) 200, 561, 966
MspCI CTTAAG 1 cut(s) 199
MspI CCGG 3 cut(s) 423, 628, 735
MspR9I CCNGG 1 cut(s) 628
MunI CAATTG 2 cut(s) 524, 788
MwoI GCNNNNNNNGC 2 cut(s) 11, 98
NciI CCSGG 1 cut(s) 628
NdeII GATC 6 cut(s) 112, 311, 414, 815, 820, 877
NlaIII CATG 8 cut(s) 47, 172, 176, 218, 360, 421, 520, 673
NlaIV GGNNCC 1 cut(s) 663
NsiI ATGCAT 2 cut(s) 49, 174
NspI RCATGY 2 cut(s) 360, 520
PciI ACATGT 1 cut(s) 516
PcsI WCGNNNNNNNCGW 2 cut(s) 327, 824
PfeI GAWTC 2 cut(s) 529, 623
PkrI GCNGC 6 cut(s) 91, 252, 355, 400, 587, 907
PleI GAGTC 3 cut(s) 251, 743, 871
PpsI GAGTC 3 cut(s) 251, 743, 871
Ppu21I YACGTR 1 cut(s) 322
PscI ACATGT 1 cut(s) 516
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 3 cut(s) 290, 428, 661
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 3 cut(s) 200, 561, 966
SatI GCNGC 6 cut(s) 90, 251, 354, 399, 586, 906
Sau3AI GATC 6 cut(s) 112, 311, 414, 815, 820, 877
Sau96I GGNCC 3 cut(s) 290, 428, 661
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 3 cut(s) 251, 743, 872
ScrFI CCNGG 1 cut(s) 628
SduI GDGCHC 2 cut(s) 103, 654
SfaNI GCATC 4 cut(s) 204, 224, 229, 322
SinI GGWCC 2 cut(s) 428, 661
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 8 cut(s) 138, 524, 637, 680, 775, 788, 967, 982
SsiI CCGC 5 cut(s) 89, 152, 264, 354, 585
SspMI CTAG 4 cut(s) 69, 254, 347, 596
StyD4I CCNGG 1 cut(s) 626
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 3 cut(s) 54, 81, 370
TaiI ACGT 3 cut(s) 122, 324, 660
TaqI TCGA 1 cut(s) 473
TasI AATT 8 cut(s) 138, 524, 637, 680, 775, 788, 967, 982
TatI WGTACW 1 cut(s) 105
TauI GCSGC 3 cut(s) 92, 356, 588
TfiI GAWTC 2 cut(s) 529, 623
Tru1I TTAA 3 cut(s) 200, 561, 966
Tru9I TTAA 3 cut(s) 200, 561, 966
TscAI CASTG 4 cut(s) 103, 373, 654, 736
TseI GCWGC 3 cut(s) 250, 398, 905
TspDTI ATGAA 3 cut(s) 214, 606, 686
TspGWI ACGGA 2 cut(s) 420, 477
TspRI CASTG 4 cut(s) 103, 373, 654, 736
Vha464I CTTAAG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 650
VpaK11BI GGWCC 2 cut(s) 428, 661
XapI RAATTY 2 cut(s) 637, 680
XceI RCATGY 2 cut(s) 360, 520
XspI CTAG 4 cut(s) 69, 254, 347, 596
ZrmI AGTACT 1 cut(s) 107
Zsp2I ATGCAT 2 cut(s) 49, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.