Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014242

Physical Location & Seq

Genomic Coordinates Reverse (-)

29266670 .. 29268274

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1193700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGTGTGTTTGCACCAAAAACAATCTTCTTCTTCTTCCTCCATGCATTACTGTTACTGCTTTCAACTAGGTTTTCACAGTCAAAAGCAGCGCTCAGTTCTCAGTACTATGATCAAACGTGTCCACAAGCTGAGAAAATTATATTACAAGCGGTGTATAATGCTTCCATGCATGACCCTAAAGTCCCAGCTCGTATCTTAAGGATGTTCTTCCATGATTACTCCACCGCAGGAAACCAAGCAGAGAAAGACGACCCTCCCAATATCTCAGTCCGATCATTCTACGTGATTGACGATGCCAAAGTCAAGCTAGAAGCCGCATGTCCACACACTGTTTCTTGTGCTGATATCGTCGGCATTGCTGCAAGAGATGTAGTGATCATGTCCGGAGGTCCGTTTTGGAATTTGCTAAAGGGGAGGAAAGACGGAAGGGTGTCGAGAGCTAATGAGACCATCAACTTACCAGCTCCAACTTTCAACGTGTCCCAATTGATTCAAAGCTTTGCTAAGAGAGGTTTAGGTTTTAAAGATTTGGTTGCTCTATCTGGCGGCCACACTCTAGGGTTCTCACATTGTTCTTCATTTGAATCCCGGCTTCGGAATTTTAGTTCAGTGCACGATGTCGACCCAACCATGAACAAAGAATTTGCTCAGAAGCTAAGAACCAAATGCTCTAAGCCGAACAGGGATATCACTGCCGGAGAGTTGTTGGACTCAACTTCCTCAACTTTTGATAACAATTACTACAAGCAATTGGTGGCAGGTAAGGGCGTGTTTGGATCGGATCAAGCGTTGTTTAGCGATTACAGGACTGGATGGATTGTTGAGTCGTTTGCCAAGGATCAAAGTGTGTTCTTCAAGGAGTTTGCAGCTTCAATGGTAAATCTTGGAAATGTTGGGGTGATTGAGGATGGTGGTGAAGTGAGACTGAATTGCCATGTGGTTAACAAGTCAACACTTTTTTTCTTCCCTAGCACAGCCGTGTTTAATCATATCCGTTTTTTCGTATTGTTAAGTCAATTTATTTTCCGATCAAACGGCGGGTTGGCATTGTCACAAAAGACGGAGTCAGTGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

360

Amino Acids

39.76

Weight (kDa)

8.93

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	51 - 281	1e-68	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51890
fragaria_vesca	FvH4_7g28760
malus_domestica	MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica	Prupe.2G287900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376321
rosa_laevigata	RLG00000026612
rosa_multiflora	Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282210
rosa_rugosa	Rorug01G0395600
rosa_samantha	Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana	Rw1G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	5 cut(s)	152, 228, 318, 549, 1041
AclWI	GGATC	3 cut(s)	787, 792, 849
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	3 cut(s)	403, 601, 644
AfaI	GTAC	1 cut(s)	107
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	597
AflII	CTTAAG	1 cut(s)	199
AflIII	ACRYGT	2 cut(s)	119, 480
AgsI	TTSAA	6 cut(s)	66, 478, 497, 587, 859, 876
AleI	CACNNNNGTG	1 cut(s)	980
AloI	GAACNNNNNNTCC	2 cut(s)	592, 624
AluBI	AGCT	8 cut(s)	131, 191, 310, 443, 467, 501, 658, 872
AluI	AGCT	8 cut(s)	131, 191, 310, 443, 467, 501, 658, 872
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	2 cut(s)	443, 919
Alw44I	GTGCAC	1 cut(s)	614
AlwI	GGATC	3 cut(s)	787, 792, 849
Aor13HI	TCCGGA	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	1 cut(s)	550
ApaLI	GTGCAC	1 cut(s)	614
ApeKI	GCWGC	3 cut(s)	89, 362, 869
ApoI	RAATTY	3 cut(s)	403, 601, 644
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	913, 929
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	3 cut(s)	101, 349, 881
BccI	CCATC	3 cut(s)	461, 810, 905
BceAI	ACGGC	2 cut(s)	965, 1054
BclI	TGATCA	2 cut(s)	112, 378
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	443, 919
BfaI	CTAG	4 cut(s)	69, 311, 560, 972
BfoI	RGCGCY	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	752
BisI	GCNGC	5 cut(s)	90, 318, 363, 550, 870
BlsI	GCNGC	5 cut(s)	91, 319, 364, 551, 871
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	592
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	592
BmsI	GCATC	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	592
BsaAI	YACGTR	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	837
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	1 cut(s)	1058
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse1I	ACTGG	1 cut(s)	817
Bse3DI	GCAATG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	837
BseGI	GGATG	3 cut(s)	210, 821, 916
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	5 cut(s)	109, 116, 123, 282, 665
BseNI	ACTGG	1 cut(s)	817
BseSI	GKGCMC	1 cut(s)	618
BseXI	GCAGC	3 cut(s)	101, 349, 881
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	552
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	3 cut(s)	387, 592, 699
BslFI	GGGAC	2 cut(s)	170, 469
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmAI	GTCTC	2 cut(s)	443, 919
BsmFI	GGGAC	2 cut(s)	170, 469
BsnI	GGCC	1 cut(s)	552
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	7 cut(s)	112, 275, 378, 779, 784, 841, 1031
BspACI	CCGC	5 cut(s)	152, 228, 318, 549, 1041
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	5 cut(s)	108, 115, 124, 281, 664
BspEI	TCCGGA	1 cut(s)	386
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	3 cut(s)	787, 792, 849
BspTI	CTTAAG	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	817
BssECI	CCNNGG	1 cut(s)	837
BssMI	GATC	7 cut(s)	112, 275, 378, 779, 784, 841, 1031
BssT1I	CCWWGG	1 cut(s)	837
Bst4CI	ACNGT	3 cut(s)	54, 81, 334
BstAFI	CTTAAG	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	286
BstDEI	CTNAG	8 cut(s)	95, 102, 132, 268, 507, 651, 659, 675
BstF5I	GGATG	3 cut(s)	210, 821, 916
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	7 cut(s)	115, 278, 381, 782, 787, 844, 1034
BstMAI	GTCTC	2 cut(s)	443, 919
BstMBI	GATC	7 cut(s)	112, 275, 378, 779, 784, 841, 1031
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	590
BstSLI	GKGCMC	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	101, 349, 881
BsuRI	GGCC	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	210, 821, 916
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	4 cut(s)	330, 618, 693, 1077
BveI	ACCTGC	1 cut(s)	752
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	8 cut(s)	44, 169, 173, 215, 321, 382, 634, 938
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	8 cut(s)	95, 102, 132, 268, 507, 651, 659, 675
DpnI	GATC	7 cut(s)	114, 277, 380, 781, 786, 843, 1033
DpnII	GATC	7 cut(s)	112, 275, 378, 779, 784, 841, 1031
DraI	TTTAAA	1 cut(s)	526
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	837
Eco31I	GGTCTC	1 cut(s)	443
Eco32I	GATATC	2 cut(s)	349, 691
Eco47I	GGWCC	1 cut(s)	392
Eco47III	AGCGCT	1 cut(s)	93
EcoRV	GATATC	2 cut(s)	349, 691
EcoT14I	CCWWGG	1 cut(s)	837
EcoT22I	ATGCAT	2 cut(s)	49, 174
ErhI	CCWWGG	1 cut(s)	837
FaeI	CATG	8 cut(s)	47, 172, 176, 218, 324, 385, 637, 941
FaqI	GGGAC	2 cut(s)	170, 469
FatI	CATG	8 cut(s)	43, 168, 172, 214, 320, 381, 633, 937
FauI	CCCGC	1 cut(s)	1034
FbaI	TGATCA	2 cut(s)	112, 378
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	5 cut(s)	90, 318, 363, 550, 870
FokI	GGATG	3 cut(s)	217, 828, 923
Fsp4HI	GCNGC	5 cut(s)	90, 318, 363, 550, 870
FspBI	CTAG	4 cut(s)	69, 311, 560, 972
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	5 cut(s)	90, 318, 363, 550, 870
GsaI	CCCAGC	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	3 cut(s)	387, 592, 699
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	8 cut(s)	47, 172, 176, 218, 324, 385, 637, 941
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	3 cut(s)	625, 946, 954
HindII	GTYRAC	3 cut(s)	625, 946, 954
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	5 cut(s)	493, 587, 713, 827, 1067
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	3 cut(s)	387, 592, 699
HphI	GGTGA	2 cut(s)	913, 929
Hpy166II	GTNNAC	6 cut(s)	125, 326, 616, 625, 946, 954
Hpy188I	TCNGA	5 cut(s)	275, 600, 654, 784, 1031
Hpy188III	TCNNGA	2 cut(s)	387, 438
Hpy8I	GTNNAC	6 cut(s)	125, 326, 616, 625, 946, 954
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	3 cut(s)	54, 81, 334
HpyCH4IV	ACGT	3 cut(s)	119, 285, 480
HpyCH4V	TGCA	6 cut(s)	14, 47, 172, 365, 616, 869
HpyF3I	CTNAG	8 cut(s)	95, 102, 132, 268, 507, 651, 659, 675
HpySE526I	ACGT	3 cut(s)	119, 285, 480
Hsp92II	CATG	8 cut(s)	47, 172, 176, 218, 324, 385, 637, 941
HspAI	GCGC	1 cut(s)	92
Kpn2I	TCCGGA	1 cut(s)	386
Ksp22I	TGATCA	2 cut(s)	112, 378
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	7 cut(s)	112, 275, 378, 779, 784, 841, 1031
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	3 cut(s)	101, 349, 881
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	4 cut(s)	69, 311, 560, 972
MaeII	ACGT	3 cut(s)	119, 285, 480
MaeIII	GTNAC	2 cut(s)	54, 1053
MalI	GATC	7 cut(s)	114, 277, 380, 781, 786, 843, 1033
MboI	GATC	7 cut(s)	112, 275, 378, 779, 784, 841, 1031
MboII	GAAGA	8 cut(s)	19, 22, 25, 28, 202, 570, 847, 958
MfeI	CAATTG	2 cut(s)	488, 752
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	9 cut(s)	138, 403, 488, 601, 644, 739, 752, 931, 1019
MlyI	GAGTC	3 cut(s)	707, 836, 1076
MmeI	TCCRAC	2 cut(s)	494, 690
MnlI	CCTC	7 cut(s)	50, 267, 383, 411, 506, 733, 901
Mph1103I	ATGCAT	2 cut(s)	49, 174
MroI	TCCGGA	1 cut(s)	386
MseI	TTAA	5 cut(s)	200, 525, 945, 987, 1013
MslI	CAYNNNNRTG	1 cut(s)	980
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	3 cut(s)	387, 592, 699
MspR9I	CCNGG	1 cut(s)	592
MunI	CAATTG	2 cut(s)	488, 752
NciI	CCSGG	1 cut(s)	592
NdeII	GATC	7 cut(s)	112, 275, 378, 779, 784, 841, 1031
NlaIII	CATG	8 cut(s)	47, 172, 176, 218, 324, 385, 637, 941
NmuCI	GTSAC	1 cut(s)	1053
NsiI	ATGCAT	2 cut(s)	49, 174
NspI	RCATGY	1 cut(s)	324
OliI	CACNNNNGTG	1 cut(s)	980
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 788
PfeI	GAWTC	2 cut(s)	493, 587
PflFI	GACNNNGTC	1 cut(s)	1066
PkrI	GCNGC	5 cut(s)	91, 319, 364, 551, 871
PleI	GAGTC	3 cut(s)	707, 835, 1075
PpsI	GAGTC	3 cut(s)	707, 835, 1075
Ppu21I	YACGTR	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	392
PsyI	GACNNNGTC	1 cut(s)	1066
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	980
SalI	GTCGAC	1 cut(s)	623
SaqAI	TTAA	5 cut(s)	200, 525, 945, 987, 1013
SatI	GCNGC	5 cut(s)	90, 318, 363, 550, 870
Sau3AI	GATC	7 cut(s)	112, 275, 378, 779, 784, 841, 1031
Sau96I	GGNCC	1 cut(s)	392
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	3 cut(s)	707, 836, 1076
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	980
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	9 cut(s)	138, 403, 488, 601, 644, 739, 752, 931, 1019
SsiI	CCGC	5 cut(s)	152, 228, 318, 549, 1041
SspMI	CTAG	4 cut(s)	69, 311, 560, 972
StyD4I	CCNGG	1 cut(s)	590
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	3 cut(s)	54, 81, 334
TaiI	ACGT	3 cut(s)	122, 288, 483
TaqI	TCGA	2 cut(s)	437, 624
TasI	AATT	9 cut(s)	138, 403, 488, 601, 644, 739, 752, 931, 1019
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	2 cut(s)	320, 552
TfiI	GAWTC	2 cut(s)	493, 587
Tru1I	TTAA	5 cut(s)	200, 525, 945, 987, 1013
Tru9I	TTAA	5 cut(s)	200, 525, 945, 987, 1013
TscAI	CASTG	4 cut(s)	337, 618, 700, 1077
TseFI	GTSAC	1 cut(s)	1053
TseI	GCWGC	3 cut(s)	89, 362, 869
Tsp45I	GTSAC	1 cut(s)	1053
TspDTI	ATGAA	2 cut(s)	570, 650
TspGWI	ACGGA	4 cut(s)	384, 441, 986, 1079
TspRI	CASTG	4 cut(s)	337, 618, 700, 1077
Tth111I	GACNNNGTC	1 cut(s)	1066
Vha464I	CTTAAG	1 cut(s)	199
VneI	GTGCAC	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	3 cut(s)	403, 601, 644
XceI	RCATGY	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	4 cut(s)	69, 311, 560, 972
ZrmI	AGTACT	1 cut(s)	107
Zsp2I	ATGCAT	2 cut(s)	49, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.