Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009929

Physical Location & Seq

Genomic Coordinates Reverse (-)

21094547 .. 21095891

Gene Structure 1345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAATCGAATCACGAAGGCAACGCGATACAAGTGATTGACCAAGTAACAACCATGACCCATCTGTCTGACCCGAATCCGAAAACCAAACCGGGTATGATGCTCATGAAACAAGAAGACGGGTATTTGCAGCCGGTGAAGACTAAACCGGCTCCGAAGAGACCGACTTCTAAAGACCGTCACACGAAAGTAGAAGGACGAGGTCGGAGGATCCGAATGCCGGCGGGTTGCGCTGCTCGGGTCTTTCAATTGACCCGTGAACTTGGTCACAAATCCGACGGAGAAACGATACGGTGGTTATTGGAACGAGCTGAACCGGCGATAATTGAAGCAACCGGAACCGGAACTGTACCGGCTATTGCTGTATCGGTTAACGGAACTTTAAAAATCCCGACGAGCTCTCCAGTGTTGAATGACGGCGGCCGTGACGGTGACGGTGACCTAATAAAGAAACGGAGGAAGAGAAACTGTACGAGCGATTTCGTAGACGTTAATGACAGCTGTCATAGCTCCGTTACTTCTGGGTTAGCTCCGATAACGGCGTCAAACTACGGCGTTAATATCCTGAACGTTAATACACAGGGGTTTGTGCCGTTTTGGCCTATGGGTATGGGTACTGCGTTTGTTACTGGTGGGCCGGATCAAATGGGCCAAATGTGGGCTATTCCTACCGTTGCTACAGCTCCGTTTCTGAATGTTGGTGCTAGACCGGTGTCTAGTTATGTCTCAAACGCTTCAGACGCTGAGGCGGAGATGGAAACGAGCGGTGGCGGAACGACGCAACCGCTGAGGGATTTTTCGTTGGAGATTTATGATAAGAGAGAGCTTCAGTTTTTGGGTGGCTCAGGGAACTCATCTCCGTCTTCATGTCATGAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

293

Amino Acids

31.46

Weight (kDa)

7.01

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	56 - 127	1.1e-25	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51910 AT5G51910
fragaria_vesca	FvH4_7g28770
malus_domestica	MD00G1004900.v1.1 MD01G1194100.v1.1
prunus_persica	Prupe.2G288000_v2.0.a1
pyrus_communis	pycom01g20440 pycom07g23990
rosa_chinensis	RchiOBHm_Chr1g0376331
rosa_laevigata	RLG00000026611
rosa_multiflora	Rmu_co8276131.1_g000001 Rmu_sc0005594.1_g000020 Rmu_sc0016074.1_g000003 Rmu_ssc0000116.1_g000063 Rmu_ssc0000116.1_g000064
rosa_roxburghii	Rroxscaffold_4G00282200
rosa_samantha	Rh1AG406700 Rh1BG370700 Rh1CG383500 Rh1DG400500
rosa_wichuraiana	Rw1G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	765
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	26
AciI	CCGC	6 cut(s)	224, 420, 749, 765, 771, 785
AclI	AACGTT	1 cut(s)	570
AclWI	GGATC	3 cut(s)	205, 218, 648
AcoI	YGGCCR	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	720, 812
AcyI	GRCGYC	1 cut(s)	542
AfaI	GTAC	3 cut(s)	351, 472, 616
AfiI	CCNNNNNNNGG	2 cut(s)	220, 658
AgeI	ACCGGT	1 cut(s)	709
AgsI	TTSAA	3 cut(s)	248, 329, 412
AluBI	AGCT	7 cut(s)	311, 399, 501, 510, 530, 683, 826
AluI	AGCT	7 cut(s)	311, 399, 501, 510, 530, 683, 826
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	3 cut(s)	154, 730, 869
AlwI	GGATC	3 cut(s)	205, 218, 648
AlwNI	CAGNNNCTG	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	4 cut(s)	421, 599, 635, 649
ApeKI	GCWGC	2 cut(s)	130, 233
AsiGI	ACCGGT	1 cut(s)	709
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	635, 649
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	148, 443, 449
AvaI	CYCGRG	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BamHI	GGATCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	401
BbsI	GAAGAC	3 cut(s)	123, 146, 855
Bbv12I	GWGCWC	1 cut(s)	401
BbvCI	CCTCAGC	2 cut(s)	744, 788
BbvI	GCAGC	2 cut(s)	142, 220
BccI	CCATC	2 cut(s)	69, 748
BceAI	ACGGC	5 cut(s)	408, 433, 555, 568, 577
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	154, 730, 869
BfaI	CTAG	2 cut(s)	705, 717
BfmI	CTRYAG	1 cut(s)	678
BglI	GCCNNNNNGGC	1 cut(s)	598
BisI	GCNGC	3 cut(s)	131, 234, 421
BlsI	GCNGC	3 cut(s)	132, 235, 422
Bme1390I	CCNGG	1 cut(s)	93
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	2 cut(s)	635, 649
BmiI	GGNNCC	3 cut(s)	153, 212, 340
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	90
BoxI	GACNNNNGTC	2 cut(s)	501, 712
BpiI	GAAGAC	3 cut(s)	123, 146, 855
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	3 cut(s)	744, 788, 844
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	542
BsaI	GGTCTC	1 cut(s)	154
BsaWI	WCCGGW	3 cut(s)	335, 341, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 658
Bse118I	RCCGGY	6 cut(s)	133, 148, 220, 316, 352, 709
Bse1I	ACTGG	2 cut(s)	404, 634
BseLI	CCNNNNNNNGG	2 cut(s)	220, 658
BseMII	CTCAG	3 cut(s)	735, 779, 858
BseNI	ACTGG	2 cut(s)	404, 634
BseX3I	CGGCCG	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	142, 220
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	4 cut(s)	423, 601, 637, 651
BshTI	ACCGGT	1 cut(s)	709
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	220, 658
BsmAI	GTCTC	3 cut(s)	154, 730, 869
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	4 cut(s)	423, 601, 637, 651
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	210, 640
BspACI	CCGC	6 cut(s)	224, 420, 749, 765, 771, 785
BspANI	GGCC	4 cut(s)	423, 601, 637, 651
BspCNI	CTCAG	3 cut(s)	736, 780, 857
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	2 cut(s)	105, 871
BspLI	GGNNCC	3 cut(s)	153, 212, 340
BspPI	GGATC	3 cut(s)	205, 218, 648
BspTNI	GGTCTC	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	765
BsrFI	RCCGGY	6 cut(s)	133, 148, 220, 316, 352, 709
BsrI	ACTGG	2 cut(s)	404, 634
BssAI	RCCGGY	6 cut(s)	133, 148, 220, 316, 352, 709
BssMI	GATC	2 cut(s)	210, 640
BssNI	GRCGYC	1 cut(s)	542
Bst4CI	ACNGT	7 cut(s)	179, 294, 349, 431, 437, 470, 673
Bst6I	CTCTTC	2 cut(s)	152, 455
BstACI	GRCGYC	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	744, 788, 844
BstEII	GGTNACC	1 cut(s)	437
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	213, 643
BstMAI	GTCTC	3 cut(s)	154, 730, 869
BstMBI	GATC	2 cut(s)	210, 640
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 317, 507, 598, 740
BstPAI	GACNNNNGTC	2 cut(s)	501, 712
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	142, 220
BstV2I	GAAGAC	3 cut(s)	123, 146, 855
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BstZI	CGGCCG	1 cut(s)	421
BsuRI	GGCC	4 cut(s)	423, 601, 637, 651
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	743
CciI	TCATGA	2 cut(s)	105, 871
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	6 cut(s)	133, 148, 220, 316, 352, 709
Cfr13I	GGNCC	2 cut(s)	635, 649
CseI	GACGC	3 cut(s)	531, 749, 787
Csp6I	GTAC	3 cut(s)	350, 471, 615
CspAI	ACCGGT	1 cut(s)	709
CviAII	CATG	4 cut(s)	55, 106, 867, 872
CviQI	GTAC	3 cut(s)	350, 471, 615
DdeI	CTNAG	3 cut(s)	744, 788, 844
DpnI	GATC	2 cut(s)	212, 642
DpnII	GATC	2 cut(s)	210, 640
DraI	TTTAAA	1 cut(s)	384
DrdI	GACNNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	421
EagI	CGGCCG	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	152, 455
EarI	CTCTTC	2 cut(s)	152, 455
EciI	GGCGGA	2 cut(s)	764, 786
Ecl136II	GAGCTC	1 cut(s)	399
EclXI	CGGCCG	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	154
Eco52I	CGGCCG	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	399
Eco57I	CTGAAG	2 cut(s)	720, 812
Eco88I	CYCGRG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	399
EcoO65I	GGTNACC	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	401
FaeI	CATG	4 cut(s)	58, 109, 870, 875
FatI	CATG	4 cut(s)	54, 105, 866, 871
FauI	CCCGC	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	131, 234, 421
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	131, 234, 421
FspBI	CTAG	2 cut(s)	705, 717
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	131, 234, 421
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	4 cut(s)	423, 601, 637, 651
HgaI	GACGC	3 cut(s)	531, 749, 787
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	4 cut(s)	58, 109, 870, 875
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	5, 10, 76
HpaI	GTTAAC	1 cut(s)	373
HphI	GGTGA	3 cut(s)	148, 443, 449
Hpy166II	GTNNAC	3 cut(s)	260, 373, 487
Hpy188I	TCNGA	9 cut(s)	70, 81, 156, 207, 215, 277, 534, 693, 739
Hpy188III	TCNNGA	5 cut(s)	14, 106, 391, 565, 872
Hpy8I	GTNNAC	3 cut(s)	260, 373, 487
Hpy99I	CGWCG	3 cut(s)	281, 397, 781
HpyAV	CCTTC	2 cut(s)	11, 188
HpyCH4III	ACNGT	7 cut(s)	179, 294, 349, 431, 437, 470, 673
HpyCH4IV	ACGT	2 cut(s)	489, 570
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 317, 507, 598, 740
HpyF3I	CTNAG	3 cut(s)	744, 788, 844
HpySE526I	ACGT	2 cut(s)	489, 570
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	4 cut(s)	58, 109, 870, 875
HspAI	GCGC	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	210, 640
LmnI	GCTCC	4 cut(s)	157, 515, 535, 688
Lsp1109I	GCAGC	2 cut(s)	142, 220
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	705, 717
MaeII	ACGT	2 cut(s)	489, 570
MaeIII	GTNAC	8 cut(s)	46, 179, 266, 425, 431, 437, 514, 625
MalI	GATC	2 cut(s)	212, 642
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	2 cut(s)	210, 640
MboII	GAAGA	5 cut(s)	128, 151, 169, 472, 855
MfeI	CAATTG	1 cut(s)	248
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	248, 324
MmeI	TCCRAC	3 cut(s)	185, 300, 783
MnlI	CCTC	5 cut(s)	194, 201, 450, 739, 783
MroNI	GCCGGC	1 cut(s)	220
MseI	TTAA	6 cut(s)	372, 383, 492, 558, 573, 880
MspA1I	CMGCKG	2 cut(s)	501, 787
MspR9I	CCNGG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	222
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	5 cut(s)	230, 317, 507, 598, 740
NaeI	GCCGGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	210, 640
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	58, 109, 870, 875
NlaIV	GGNNCC	3 cut(s)	153, 212, 340
NmuCI	GTSAC	5 cut(s)	179, 266, 425, 431, 437
PagI	TCATGA	2 cut(s)	105, 871
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PctI	GAATGC	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	5, 10, 76
PflFI	GACNNNGTC	1 cut(s)	201
PinAI	ACCGGT	1 cut(s)	709
PkrI	GCNGC	3 cut(s)	132, 235, 422
PshAI	GACNNNNGTC	2 cut(s)	501, 712
Psp124BI	GAGCTC	1 cut(s)	401
Psp1406I	AACGTT	1 cut(s)	570
PspEI	GGTNACC	1 cut(s)	437
PspN4I	GGNNCC	3 cut(s)	153, 212, 340
PspPI	GGNCC	2 cut(s)	635, 649
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	501
RsaI	GTAC	3 cut(s)	351, 472, 616
RsaNI	GTAC	3 cut(s)	350, 471, 615
SacI	GAGCTC	1 cut(s)	401
SaqAI	TTAA	6 cut(s)	372, 383, 492, 558, 573, 880
SatI	GCNGC	3 cut(s)	131, 234, 421
Sau3AI	GATC	2 cut(s)	210, 640
Sau96I	GGNCC	2 cut(s)	635, 649
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	678
Sse9I	AATT	2 cut(s)	248, 324
SsiI	CCGC	6 cut(s)	224, 420, 749, 765, 771, 785
SspMI	CTAG	2 cut(s)	705, 717
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	7 cut(s)	179, 294, 349, 431, 437, 470, 673
TaiI	ACGT	2 cut(s)	492, 573
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	248, 324
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	5, 10, 76
Tru1I	TTAA	6 cut(s)	372, 383, 492, 558, 573, 880
Tru9I	TTAA	6 cut(s)	372, 383, 492, 558, 573, 880
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	5 cut(s)	179, 266, 425, 431, 437
TseI	GCWGC	2 cut(s)	130, 233
Tsp45I	GTSAC	5 cut(s)	179, 266, 425, 431, 437
TspDTI	ATGAA	2 cut(s)	122, 855
TspGWI	ACGGA	6 cut(s)	294, 390, 469, 502, 675, 849
TspRI	CASTG	1 cut(s)	411
Tth111I	GACNNNGTC	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	2 cut(s)	705, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.