MD00G1004900.v1.1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0009929
Physical Location & Seq
Forward (+)
735426 .. 737092
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1004900.v1.1.491

Sequence Viewer

Length: 963 bp
ATGAAGGAAGAGCTGACGGACCCAGTTCAACATTTAGACCCGCAGGGATCTCTGTCCATGGGGATTGTTCCGGTACCCGTTTCTACGGCGCTGAAACCGGCTAGGAGGTCGTCGAAGGACCGCCACACGAAGGTGGAGGGCCGGGGCCGGAGGATCCGAATGCCCGCCGTGTGTGCAGCCAGGATTTTTCAACTGACCCGGGAACTCGGCCACAAGTCCGACGGCGAAACCATAAGATGGCTACTGGAGCACGCCGAGCCTGCTATCATTCAAGCCACCGGCTCAGGTACCGTCCCCGCTATCGCCATCTCTGTCGGCGGCACTCTAAAGATACCCACTACTTCCCCTGCCAGACCCAACGGTGAAATTACTGAAATACCCAATAAGAGAAAGAAGATGAGAGGTTCCACGGGTGAGTTCATTGACGCGCACGACCAGAACTCTCTGCCTAGTGGGTTGGCACCCATAGCACCAATGACGTACGGCGGCGGTGGAGGTGGCTTGGTGCCTATGTGGCAAGTCGGAGCAACCGGCGCGGCTGGGCCTTTCTTCATGTTTCCGAACTCCGGGGCGATTCAGAACCAGCCTCAGCTCTGGGCTATTCCGACGGCGGATTCCACGGCGCCGATTTTCAATTTCCAACCCAGACCCATGTCCGATTTCGTCTCTGCATTCCAACCTGGGGTTCAAGTTGGTGGTGTTAGCGGCGGAGATGGGCAGTTGCAGGCTTCTTCGGGTTCGATGTCGAGCGGCACAGCCGCGGGTGGTGGTGGGACCTGCTCTTCTAGTTTGGGACACAGTTTGGACTCGGCCTCGGGGACCAGTGCTGCAGCCGCCGCCGATGCTCCGCCGAGCTCCGCCACTCAGATGCTGAGGGATTTTTCGTTGGAGATTTATGATAAGAAGGAGCTTCAGTTCATGGGGCAGGCTGCAAATGCACAAACGACATACTCGGAATCTTGA

Protein Analysis

321

Amino Acids

33.14

Weight (kDa)

7.02

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 37 - 100 9.8e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 785
Acc65I GGTACC 2 cut(s) 73, 287
AccB1I GGYRCC 5 cut(s) 73, 287, 460, 505, 622
AccB7I CCANNNNNTGG 1 cut(s) 237
AccBSI CCGCTC 1 cut(s) 750
AccII CGCG 3 cut(s) 428, 536, 761
AclWI GGATC 3 cut(s) 55, 148, 161
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 1 cut(s) 623
AfaI GTAC 3 cut(s) 75, 289, 482
AfiI CCNNNNNNNGG 4 cut(s) 130, 237, 566, 682
AgsI TTSAA 5 cut(s) 29, 191, 272, 634, 689
AjnI CCWGG 2 cut(s) 179, 679
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AleI CACNNNNGTG 1 cut(s) 131
AloI GAACNNNNNNTCC 2 cut(s) 899, 931
AluBI AGCT 4 cut(s) 13, 592, 855, 910
AluI AGCT 4 cut(s) 13, 592, 855, 910
Alw21I GWGCWC 2 cut(s) 252, 857
Alw26I GTCTC 1 cut(s) 670
AlwI GGATC 3 cut(s) 55, 148, 161
AlwNI CAGNNNCTG 1 cut(s) 871
Ama87I CYCGRG 2 cut(s) 198, 814
AoxI GGCC 5 cut(s) 139, 145, 208, 542, 810
ApeKI GCWGC 4 cut(s) 176, 827, 830, 929
Asp718I GGTACC 2 cut(s) 73, 287
AspLEI GCGC 4 cut(s) 91, 430, 536, 625
AspS9I GGNCC 7 cut(s) 19, 118, 139, 145, 542, 774, 819
AsuC2I CCSGG 4 cut(s) 143, 199, 200, 568
AsuHPI GGTGA 2 cut(s) 374, 425
AvaI CYCGRG 2 cut(s) 198, 814
AvaII GGWCC 4 cut(s) 19, 118, 774, 819
BamHI GGATCC 1 cut(s) 153
BanI GGYRCC 5 cut(s) 73, 287, 460, 505, 622
BanII GRGCYC 1 cut(s) 857
Bbv12I GWGCWC 2 cut(s) 252, 857
BbvCI CCTCAGC 2 cut(s) 588, 872
BbvI GCAGC 4 cut(s) 188, 814, 842, 916
BccI CCATC 3 cut(s) 231, 314, 707
BceAI ACGGC 6 cut(s) 102, 152, 238, 499, 624, 636
BciT130I CCWGG 2 cut(s) 181, 681
BcnI CCSGG 4 cut(s) 143, 199, 200, 568
BcoDI GTCTC 1 cut(s) 670
BfaI CTAG 3 cut(s) 102, 450, 786
BfmI CTRYAG 1 cut(s) 828
BfoI RGCGCY 2 cut(s) 92, 626
BfuAI ACCTGC 1 cut(s) 785
BglI GCCNNNNNGGC 1 cut(s) 514
Bme1390I CCNGG 6 cut(s) 143, 181, 199, 200, 568, 681
Bme18I GGWCC 4 cut(s) 19, 118, 774, 819
BmeT110I CYCGRG 2 cut(s) 198, 814
BmgT120I GGNCC 7 cut(s) 19, 118, 139, 145, 542, 774, 819
BmrFI CCNGG 6 cut(s) 143, 181, 199, 200, 568, 681
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 2 cut(s) 832, 858
BmuI ACTGGG 1 cut(s) 17
BoxI GACNNNNGTC 1 cut(s) 652
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 3 cut(s) 283, 588, 872
BpuMI CCSGG 4 cut(s) 143, 199, 200, 568
BsaHI GRCGYC 1 cut(s) 623
BsaJI CCNNGG 9 cut(s) 57, 142, 198, 408, 567, 618, 680, 759, 813
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 237, 566, 682
Bse118I RCCGGY 3 cut(s) 97, 278, 530
Bse1I ACTGG 3 cut(s) 23, 249, 822
BseBI CCWGG 2 cut(s) 181, 681
BseDI CCNNGG 9 cut(s) 57, 142, 198, 408, 567, 618, 680, 759, 813
BseLI CCNNNNNNNGG 4 cut(s) 130, 237, 566, 682
BseMII CTCAG 4 cut(s) 297, 602, 863, 878
BseNI ACTGG 3 cut(s) 23, 249, 822
BseXI GCAGC 4 cut(s) 188, 814, 842, 916
BseYI CCCAGC 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 3 cut(s) 428, 536, 761
BshFI GGCC 5 cut(s) 141, 147, 210, 544, 812
BshNI GGYRCC 5 cut(s) 73, 287, 460, 505, 622
BsiHKAI GWGCWC 2 cut(s) 252, 857
BsiHKCI CYCGRG 2 cut(s) 198, 814
BsiSI CCGG 8 cut(s) 71, 98, 142, 148, 199, 279, 531, 567
BsiWI CGTACG 1 cut(s) 480
BslFI GGGAC 4 cut(s) 278, 787, 807, 832
BslI CCNNNNNNNGG 4 cut(s) 130, 237, 566, 682
BsmAI GTCTC 1 cut(s) 670
BsmBI CGTCTC 1 cut(s) 670
BsmFI GGGAC 4 cut(s) 278, 787, 807, 832
BsmI GAATGC 2 cut(s) 165, 671
BsnI GGCC 5 cut(s) 141, 147, 210, 544, 812
BsoBI CYCGRG 2 cut(s) 198, 814
Bsp1286I GDGCHC 2 cut(s) 252, 857
Bsp143I GATC 2 cut(s) 47, 153
Bsp19I CCATGG 1 cut(s) 57
BspANI GGCC 5 cut(s) 141, 147, 210, 544, 812
BspCNI CTCAG 4 cut(s) 296, 601, 864, 877
BspFNI CGCG 3 cut(s) 428, 536, 761
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 1 cut(s) 785
BspPI GGATC 3 cut(s) 55, 148, 161
BspQI GCTCTTC 2 cut(s) 3, 787
BspT107I GGYRCC 5 cut(s) 73, 287, 460, 505, 622
BsrBI CCGCTC 1 cut(s) 750
BsrFI RCCGGY 3 cut(s) 97, 278, 530
BsrI ACTGG 3 cut(s) 23, 249, 822
BssAI RCCGGY 3 cut(s) 97, 278, 530
BssECI CCNNGG 9 cut(s) 57, 142, 198, 408, 567, 618, 680, 759, 813
BssMI GATC 2 cut(s) 47, 153
BssNI GRCGYC 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 181, 681
Bst4CI ACNGT 3 cut(s) 292, 362, 800
Bst6I CTCTTC 2 cut(s) 3, 787
BstACI GRCGYC 1 cut(s) 623
BstC8I GCNNGC 5 cut(s) 165, 252, 261, 726, 927
BstDEI CTNAG 4 cut(s) 283, 588, 864, 872
BstDSI CCRYGG 4 cut(s) 57, 408, 618, 759
BstFNI CGCG 3 cut(s) 428, 536, 761
BstH2I RGCGCY 2 cut(s) 92, 626
BstHHI GCGC 4 cut(s) 91, 430, 536, 625
BstKTI GATC 2 cut(s) 50, 156
BstMAI GTCTC 1 cut(s) 670
BstMBI GATC 2 cut(s) 47, 153
BstNI CCWGG 2 cut(s) 181, 681
BstPAI GACNNNNGTC 1 cut(s) 652
BstSCI CCNGG 6 cut(s) 141, 179, 197, 198, 566, 679
BstSFI CTRYAG 1 cut(s) 828
BstUI CGCG 3 cut(s) 428, 536, 761
BstV1I GCAGC 4 cut(s) 188, 814, 842, 916
BstX2I RGATCY 2 cut(s) 47, 153
BstYI RGATCY 2 cut(s) 47, 153
BsuRI GGCC 5 cut(s) 141, 147, 210, 544, 812
BtgI CCRYGG 4 cut(s) 57, 408, 618, 759
BtsIMutI CAGTG 1 cut(s) 829
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 5 cut(s) 165, 252, 261, 726, 927
CaiI CAGNNNCTG 1 cut(s) 871
CfoI GCGC 4 cut(s) 91, 430, 536, 625
Cfr10I RCCGGY 3 cut(s) 97, 278, 530
Cfr13I GGNCC 7 cut(s) 19, 118, 139, 145, 542, 774, 819
Cfr42I CCGCGG 1 cut(s) 762
Cfr9I CCCGGG 1 cut(s) 198
CseI GACGC 1 cut(s) 434
Csp6I GTAC 3 cut(s) 74, 288, 481
CviAII CATG 4 cut(s) 58, 553, 652, 919
CviQI GTAC 3 cut(s) 74, 288, 481
DdeI CTNAG 4 cut(s) 283, 588, 864, 872
DinI GGCGCC 1 cut(s) 624
DpnI GATC 2 cut(s) 49, 155
DpnII GATC 2 cut(s) 47, 153
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 3, 787
EarI CTCTTC 2 cut(s) 3, 787
EciI GGCGGA 4 cut(s) 626, 723, 837, 847
Ecl136II GAGCTC 1 cut(s) 855
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 857
Eco47I GGWCC 4 cut(s) 19, 118, 774, 819
Eco53kI GAGCTC 1 cut(s) 855
Eco57I CTGAAG 1 cut(s) 896
Eco88I CYCGRG 2 cut(s) 198, 814
EcoICRI GAGCTC 1 cut(s) 855
EcoO109I RGGNCCY 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 179, 679
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 857
EgeI GGCGCC 1 cut(s) 624
EheI GGCGCC 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 670
FaeI CATG 4 cut(s) 61, 556, 655, 922
FaiI YATR 9 cut(s) 59, 233, 467, 512, 554, 653, 897, 920, 949
FaqI GGGAC 4 cut(s) 278, 787, 807, 832
FatI CATG 4 cut(s) 57, 552, 651, 918
FauI CCCGC 4 cut(s) 48, 172, 304, 754
FriOI GRGCYC 1 cut(s) 857
FspBI CTAG 3 cut(s) 102, 450, 786
GlaI GCGC 4 cut(s) 90, 429, 535, 624
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 2 cut(s) 92, 626
HaeIII GGCC 5 cut(s) 141, 147, 210, 544, 812
HapII CCGG 8 cut(s) 71, 98, 142, 148, 199, 279, 531, 567
HgaI GACGC 1 cut(s) 434
HhaI GCGC 4 cut(s) 91, 430, 536, 625
Hin1I GRCGYC 1 cut(s) 623
Hin1II CATG 4 cut(s) 61, 556, 655, 922
Hin6I GCGC 4 cut(s) 89, 428, 534, 623
HinP1I GCGC 4 cut(s) 89, 428, 534, 623
HinfI GANTC 4 cut(s) 574, 614, 806, 956
HpaII CCGG 8 cut(s) 71, 98, 142, 148, 199, 279, 531, 567
HphI GGTGA 2 cut(s) 374, 425
Hpy188I TCNGA 9 cut(s) 158, 220, 524, 561, 579, 606, 658, 867, 955
Hpy188III TCNNGA 1 cut(s) 960
Hpy99I CGWCG 3 cut(s) 115, 224, 610
HpyAV CCTTC 3 cut(s) 109, 124, 898
HpyCH4III ACNGT 3 cut(s) 292, 362, 800
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 6 cut(s) 176, 671, 724, 830, 932, 938
HpyF3I CTNAG 4 cut(s) 283, 588, 864, 872
HpySE526I ACGT 1 cut(s) 479
Hsp92I GRCGYC 1 cut(s) 623
Hsp92II CATG 4 cut(s) 61, 556, 655, 922
HspAI GCGC 4 cut(s) 89, 428, 534, 623
KasI GGCGCC 1 cut(s) 622
KpnI GGTACC 2 cut(s) 77, 291
KspI CCGCGG 1 cut(s) 762
Kzo9I GATC 2 cut(s) 47, 153
LguI GCTCTTC 2 cut(s) 3, 787
LmnI GCTCC 5 cut(s) 247, 524, 850, 860, 907
Lsp1109I GCAGC 4 cut(s) 188, 814, 842, 916
LweI GCATC 2 cut(s) 832, 858
MaeI CTAG 3 cut(s) 102, 450, 786
MaeII ACGT 1 cut(s) 479
MalI GATC 2 cut(s) 49, 155
MbiI CCGCTC 1 cut(s) 750
MboI GATC 2 cut(s) 47, 153
MboII GAAGA 5 cut(s) 20, 406, 541, 723, 774
MflI RGATCY 2 cut(s) 47, 153
MhlI GDGCHC 2 cut(s) 252, 857
MluCI AATT 2 cut(s) 366, 634
Mly113I GGCGCC 1 cut(s) 623
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 6 cut(s) 243, 502, 629, 664, 700, 867
MnlI CCTC 8 cut(s) 99, 130, 144, 395, 488, 597, 823, 867
MslI CAYNNNNRTG 2 cut(s) 131, 866
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 8 cut(s) 71, 98, 142, 148, 199, 279, 531, 567
MspR9I CCNGG 6 cut(s) 143, 181, 199, 200, 568, 681
Mva1269I GAATGC 2 cut(s) 165, 671
MvaI CCWGG 2 cut(s) 181, 681
MvnI CGCG 3 cut(s) 428, 536, 761
NarI GGCGCC 1 cut(s) 623
NciI CCSGG 4 cut(s) 143, 199, 200, 568
NcoI CCATGG 1 cut(s) 57
NdeII GATC 2 cut(s) 47, 153
NlaIII CATG 4 cut(s) 61, 556, 655, 922
NmeAIII GCCGAG 4 cut(s) 186, 280, 788, 876
OliI CACNNNNGTG 1 cut(s) 131
PciSI GCTCTTC 2 cut(s) 3, 787
PctI GAATGC 2 cut(s) 165, 671
PfeI GAWTC 3 cut(s) 574, 614, 956
Pfl23II CGTACG 1 cut(s) 480
PflMI CCANNNNNTGG 1 cut(s) 237
PleI GAGTC 1 cut(s) 800
PluTI GGCGCC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 800
PpuMI RGGWCCY 1 cut(s) 774
PshAI GACNNNNGTC 1 cut(s) 652
Psp124BI GAGCTC 1 cut(s) 857
Psp5II RGGWCCY 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 179, 679
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 2 cut(s) 179, 679
PspLI CGTACG 1 cut(s) 480
PspPI GGNCC 7 cut(s) 19, 118, 139, 145, 542, 774, 819
PspPPI RGGWCCY 1 cut(s) 774
PstI CTGCAG 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 871
PsuI RGATCY 2 cut(s) 47, 153
RsaI GTAC 3 cut(s) 75, 289, 482
RsaNI GTAC 3 cut(s) 74, 288, 481
RseI CAYNNNNRTG 2 cut(s) 131, 866
SacI GAGCTC 1 cut(s) 857
SacII CCGCGG 1 cut(s) 762
SapI GCTCTTC 2 cut(s) 3, 787
Sau3AI GATC 2 cut(s) 47, 153
Sau96I GGNCC 7 cut(s) 19, 118, 139, 145, 542, 774, 819
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 6 cut(s) 143, 181, 199, 200, 568, 681
SduI GDGCHC 2 cut(s) 252, 857
SfaNI GCATC 2 cut(s) 832, 858
SfcI CTRYAG 1 cut(s) 828
SfoI GGCGCC 1 cut(s) 624
Sfr303I CCGCGG 1 cut(s) 762
SgrBI CCGCGG 1 cut(s) 762
SinI GGWCC 4 cut(s) 19, 118, 774, 819
SmaI CCCGGG 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 131, 866
Sse9I AATT 2 cut(s) 366, 634
SspDI GGCGCC 1 cut(s) 622
SspMI CTAG 3 cut(s) 102, 450, 786
SstI GAGCTC 1 cut(s) 857
StyD4I CCNGG 6 cut(s) 141, 179, 197, 198, 566, 679
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 292, 362, 800
TaiI ACGT 1 cut(s) 482
TaqI TCGA 3 cut(s) 113, 740, 746
TasI AATT 2 cut(s) 366, 634
TauI GCSGC 8 cut(s) 321, 489, 539, 708, 753, 761, 836, 839
TfiI GAWTC 3 cut(s) 574, 614, 956
TscAI CASTG 1 cut(s) 829
TseI GCWGC 4 cut(s) 176, 827, 830, 929
TspDTI ATGAA 4 cut(s) 17, 409, 541, 907
TspGWI ACGGA 1 cut(s) 32
TspMI CCCGGG 1 cut(s) 198
TspRI CASTG 1 cut(s) 829
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 4 cut(s) 19, 118, 774, 819
XmaI CCCGGG 1 cut(s) 198
XspI CTAG 3 cut(s) 102, 450, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.