pycom01g20440
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0009929
Physical Location & Seq
Forward (+)
18865153 .. 18866250
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20440.1

Sequence Viewer

Length: 1098 bp
ATGAAGTCGACTCAAAGGCAGAGCCTTGAAGAAAGCAACGAGCTTGAACGCGGTAGCTACAGTAACAACACCGCCACCTCAGGGTCCAGCCCATCGGTGGCGAATACTCCGGAGCAAAACCTTCCGGCGACGGCGCTGATGATGAAAGAAGAGCTGGCGGACCCAGTGCAACAGTTAGACCAGCAGGGATCTCTGTCCATGGGGATTGTTCCGGTGCCCGTTTCTACGGCACCGAAACCGGCTAGGAGGTCGTCGAAGGACCGCCACACAAAGGTGGAGGGCCGGGGCCGGAGGATCCGAATGCCCGCCACGTGTGCGGCCAGGATTTTTCAACTGACCCGGGAACTCGGCCACAAGTCCGACGGTGAAACCATTAGGTGGCTGCTGGAGCACGCCGAGCCTGCTATCATTCAAGCCACCGGCTCAGGCACCATCCCTGCTATCGCCGTTTCGGTCGGCGGCACTCTAAAGATACCAACAACTTCGCCAGCGAGACCCAACGGTGAAGTTACTGAAATACCTAAGAAGAGAAAGAAGATGAGAGGGTCCCTGGGTGAGTTCGATGACGTGCACGACCAGTCTAGCGGGTTGGCACCCATAGCACCAATGATTTACGGCGGTGGTGGCGGTGGCTTGGTGCCTATGTGGCCAATTGGAGGAACCGGCGCGGCTAGGCCTGTCTTCATGTTTCCGAACTCCGGGACGATTCAGAACCAGCCTCAGCTCTGGGCTATTCCGACGGCGGATTCCACGGCGCCGATTTTCAATTTTCAACCCAGAGCCATGTCCAATTTCGTCTCGGCCTTTCCAGCGGGGGTTCAAGTTGGCAGCGTTGGCGGTGGAGATGGGCAGTTGCAGGCCTCTTCGTGTTCGATTTCGAGCGGCGCAGCCACGGGTGGTGGTGGGAGCTGCTCTTCTAGTTTGGGACACAGTTTGGACTCGGCCCCGGGGACTAGTAATACTGCATCCGCCGCCACTGCTCCACCGAGCGCCTCCACTCAGATGCTGAAGGATTTTTCGTTGGAGGTTTATGATAAGAGGGAGCTTCAGTTAATGGGGCAGGCTGCAAATTCACAAACGCCATGCTCAGAATCTTGA

Protein Analysis

366

Amino Acids

37.89

Weight (kDa)

7.7

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 84 - 148 3e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 6 cut(s) 214, 229, 428, 592, 637, 754
AccB7I CCANNNNNTGG 1 cut(s) 378
AccBSI CCGCTC 1 cut(s) 882
AccI GTMKAC 1 cut(s) 8
AccII CGCG 2 cut(s) 51, 668
AccIII TCCGGA 1 cut(s) 109
AclWI GGATC 3 cut(s) 196, 289, 302
AcoI YGGCCR 3 cut(s) 318, 349, 647
AcsI RAATTY 1 cut(s) 1069
AcuI CTGAAG 2 cut(s) 1028, 1031
AcvI CACGTG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 755
AfiI CCNNNNNNNGG 6 cut(s) 81, 97, 271, 378, 656, 698
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 7 cut(s) 29, 47, 332, 413, 766, 773, 821
AhlI ACTAGT 1 cut(s) 953
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 2 cut(s) 320, 549
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 6 cut(s) 43, 57, 154, 724, 909, 1045
AluI AGCT 6 cut(s) 43, 57, 154, 724, 909, 1045
Alw21I GWGCWC 2 cut(s) 393, 573
Alw26I GTCTC 2 cut(s) 487, 802
Alw44I GTGCAC 1 cut(s) 569
AlwI GGATC 3 cut(s) 196, 289, 302
AlwNI CAGNNNCTG 1 cut(s) 1006
Ama87I CYCGRG 2 cut(s) 339, 946
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 9 cut(s) 280, 286, 318, 349, 647, 674, 801, 858, 942
ApaLI GTGCAC 1 cut(s) 569
ApeKI GCWGC 5 cut(s) 382, 828, 887, 909, 1064
ApoI RAATTY 1 cut(s) 1069
AspLEI GCGC 5 cut(s) 136, 668, 757, 887, 992
AspS9I GGNCC 7 cut(s) 84, 160, 259, 280, 286, 546, 943
AsuC2I CCSGG 6 cut(s) 284, 340, 341, 700, 947, 948
AsuHPI GGTGA 3 cut(s) 377, 515, 566
AvaI CYCGRG 2 cut(s) 339, 946
AvaII GGWCC 4 cut(s) 84, 160, 259, 546
AxyI CCTNAGG 1 cut(s) 79
BaeGI GKGCMC 2 cut(s) 219, 573
BalI TGGCCA 1 cut(s) 649
BamHI GGATCC 1 cut(s) 294
BanI GGYRCC 6 cut(s) 214, 229, 428, 592, 637, 754
BbrPI CACGTG 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 673
Bbv12I GWGCWC 2 cut(s) 393, 573
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 5 cut(s) 369, 840, 896, 899, 1051
BccI CCATC 3 cut(s) 100, 440, 839
BceAI ACGGC 6 cut(s) 147, 243, 431, 631, 756, 768
BciT130I CCWGG 2 cut(s) 322, 551
BcnI CCSGG 6 cut(s) 284, 340, 341, 700, 947, 948
BcoDI GTCTC 2 cut(s) 487, 802
BcuI ACTAGT 1 cut(s) 953
BfaI CTAG 5 cut(s) 243, 582, 672, 918, 954
BfmI CTRYAG 1 cut(s) 58
BfoI RGCGCY 3 cut(s) 137, 758, 993
BglI GCCNNNNNGGC 1 cut(s) 646
Bme1390I CCNGG 8 cut(s) 284, 322, 340, 341, 551, 700, 947, 948
Bme18I GGWCC 4 cut(s) 84, 160, 259, 546
BmeT110I CYCGRG 2 cut(s) 339, 946
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 7 cut(s) 84, 160, 259, 280, 286, 546, 943
BmrFI CCNGG 8 cut(s) 284, 322, 340, 341, 551, 700, 947, 948
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 2 cut(s) 974, 993
BmuI ACTGGG 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 673
BpmI CTGGAG 1 cut(s) 407
Bpu10I CCTNAGC 2 cut(s) 424, 720
BpuMI CCSGG 6 cut(s) 284, 340, 341, 700, 947, 948
BsaAI YACGTR 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 755
BsaI GGTCTC 1 cut(s) 487
BsaWI WCCGGW 2 cut(s) 109, 211
BsaXI ACNNNNNCTCC 2 cut(s) 1034, 1064
Bsc4I CCNNNNNNNGG 6 cut(s) 81, 97, 271, 378, 656, 698
Bse118I RCCGGY 3 cut(s) 238, 419, 662
Bse1I ACTGG 2 cut(s) 164, 577
Bse21I CCTNAGG 1 cut(s) 79
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 2 cut(s) 322, 551
BseGI GGATG 2 cut(s) 432, 965
BseLI CCNNNNNNNGG 6 cut(s) 81, 97, 271, 378, 656, 698
BseMII CTCAG 4 cut(s) 93, 438, 734, 1013
BseNI ACTGG 2 cut(s) 164, 577
BseSI GKGCMC 2 cut(s) 219, 573
BseXI GCAGC 5 cut(s) 369, 840, 896, 899, 1051
Bsh1236I CGCG 2 cut(s) 51, 668
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 9 cut(s) 282, 288, 320, 351, 649, 676, 803, 860, 944
BshNI GGYRCC 6 cut(s) 214, 229, 428, 592, 637, 754
BsiEI CGRYCG 1 cut(s) 456
BsiHKAI GWGCWC 2 cut(s) 393, 573
BsiHKCI CYCGRG 2 cut(s) 339, 946
BslFI GGGAC 4 cut(s) 532, 715, 939, 964
BslI CCNNNNNNNGG 6 cut(s) 81, 97, 271, 378, 656, 698
BsmAI GTCTC 2 cut(s) 487, 802
BsmBI CGTCTC 1 cut(s) 802
BsmFI GGGAC 4 cut(s) 532, 715, 939, 964
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 9 cut(s) 282, 288, 320, 351, 649, 676, 803, 860, 944
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 2 cut(s) 339, 946
Bsp1286I GDGCHC 3 cut(s) 219, 393, 573
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 2 cut(s) 188, 294
Bsp19I CCATGG 1 cut(s) 198
BspANI GGCC 9 cut(s) 282, 288, 320, 351, 649, 676, 803, 860, 944
BspCNI CTCAG 4 cut(s) 92, 437, 733, 1012
BspEI TCCGGA 1 cut(s) 109
BspFNI CGCG 2 cut(s) 51, 668
BspPI GGATC 3 cut(s) 196, 289, 302
BspQI GCTCTTC 2 cut(s) 144, 919
BspT107I GGYRCC 6 cut(s) 214, 229, 428, 592, 637, 754
BspTNI GGTCTC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 882
BsrFI RCCGGY 3 cut(s) 238, 419, 662
BsrI ACTGG 2 cut(s) 164, 577
BssAI RCCGGY 3 cut(s) 238, 419, 662
BssMI GATC 2 cut(s) 188, 294
BssNI GRCGYC 1 cut(s) 755
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 2 cut(s) 322, 551
Bst4CI ACNGT 5 cut(s) 62, 174, 365, 503, 932
Bst6I CTCTTC 4 cut(s) 144, 521, 868, 919
BstACI GRCGYC 1 cut(s) 755
BstBAI YACGTR 1 cut(s) 312
BstC8I GCNNGC 7 cut(s) 156, 306, 393, 402, 489, 858, 1062
BstDEI CTNAG 6 cut(s) 79, 424, 522, 720, 999, 1087
BstDSI CCRYGG 3 cut(s) 198, 750, 891
BstF5I GGATG 2 cut(s) 432, 965
BstFNI CGCG 2 cut(s) 51, 668
BstH2I RGCGCY 3 cut(s) 137, 758, 993
BstHHI GCGC 5 cut(s) 136, 668, 757, 887, 992
BstKTI GATC 2 cut(s) 191, 297
BstMAI GTCTC 2 cut(s) 487, 802
BstMBI GATC 2 cut(s) 188, 294
BstMCI CGRYCG 1 cut(s) 456
BstNI CCWGG 2 cut(s) 322, 551
BstSCI CCNGG 8 cut(s) 282, 320, 338, 339, 549, 698, 945, 946
BstSFI CTRYAG 1 cut(s) 58
BstSLI GKGCMC 2 cut(s) 219, 573
BstUI CGCG 2 cut(s) 51, 668
BstV1I GCAGC 5 cut(s) 369, 840, 896, 899, 1051
BstV2I GAAGAC 1 cut(s) 673
BstX2I RGATCY 2 cut(s) 188, 294
BstYI RGATCY 2 cut(s) 188, 294
Bsu36I CCTNAGG 1 cut(s) 79
BsuRI GGCC 9 cut(s) 282, 288, 320, 351, 649, 676, 803, 860, 944
BtgI CCRYGG 3 cut(s) 198, 750, 891
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 2 cut(s) 432, 965
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 2 cut(s) 171, 975
Cac8I GCNNGC 7 cut(s) 156, 306, 393, 402, 489, 858, 1062
CaiI CAGNNNCTG 1 cut(s) 1006
CfoI GCGC 5 cut(s) 136, 668, 757, 887, 992
Cfr10I RCCGGY 3 cut(s) 238, 419, 662
Cfr13I GGNCC 7 cut(s) 84, 160, 259, 280, 286, 546, 943
Cfr9I CCCGGG 2 cut(s) 339, 946
CviAII CATG 4 cut(s) 199, 685, 784, 1083
DdeI CTNAG 6 cut(s) 79, 424, 522, 720, 999, 1087
DinI GGCGCC 1 cut(s) 756
DpnI GATC 2 cut(s) 190, 296
DpnII GATC 2 cut(s) 188, 294
EaeI YGGCCR 3 cut(s) 318, 349, 647
Eam1104I CTCTTC 4 cut(s) 144, 521, 868, 919
EarI CTCTTC 4 cut(s) 144, 521, 868, 919
EciI GGCGGA 3 cut(s) 173, 758, 958
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 2 cut(s) 676, 860
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 4 cut(s) 84, 160, 259, 546
Eco57I CTGAAG 2 cut(s) 1028, 1031
Eco72I CACGTG 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 79
Eco88I CYCGRG 2 cut(s) 339, 946
EcoO109I RGGNCCY 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 320, 549
EcoT14I CCWWGG 1 cut(s) 198
EgeI GGCGCC 1 cut(s) 756
EheI GGCGCC 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 802
FaeI CATG 4 cut(s) 202, 688, 787, 1086
FaiI YATR 7 cut(s) 200, 599, 644, 686, 785, 1032, 1084
FaqI GGGAC 4 cut(s) 532, 715, 939, 964
FatI CATG 4 cut(s) 198, 684, 783, 1082
FauI CCCGC 3 cut(s) 313, 578, 805
FblI GTMKAC 1 cut(s) 8
FokI GGATG 2 cut(s) 419, 952
FspBI CTAG 5 cut(s) 243, 582, 672, 918, 954
GlaI GCGC 5 cut(s) 135, 667, 756, 886, 991
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 3 cut(s) 137, 758, 993
HaeIII GGCC 9 cut(s) 282, 288, 320, 351, 649, 676, 803, 860, 944
HhaI GCGC 5 cut(s) 136, 668, 757, 887, 992
Hin1I GRCGYC 1 cut(s) 755
Hin1II CATG 4 cut(s) 202, 688, 787, 1086
Hin6I GCGC 5 cut(s) 134, 666, 755, 885, 990
HinP1I GCGC 5 cut(s) 134, 666, 755, 885, 990
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 5 cut(s) 10, 706, 746, 938, 1091
HphI GGTGA 3 cut(s) 377, 515, 566
Hpy166II GTNNAC 2 cut(s) 9, 571
Hpy188I TCNGA 7 cut(s) 299, 361, 693, 711, 738, 1002, 1090
Hpy188III TCNNGA 2 cut(s) 110, 1095
Hpy8I GTNNAC 2 cut(s) 9, 571
Hpy99I CGWCG 4 cut(s) 133, 256, 365, 742
HpyAV CCTTC 3 cut(s) 131, 250, 1003
HpyCH4III ACNGT 5 cut(s) 62, 174, 365, 503, 932
HpyCH4IV ACGT 2 cut(s) 311, 567
HpyCH4V TGCA 5 cut(s) 169, 571, 856, 965, 1067
HpyF3I CTNAG 6 cut(s) 79, 424, 522, 720, 999, 1087
HpySE526I ACGT 2 cut(s) 311, 567
Hsp92I GRCGYC 1 cut(s) 755
Hsp92II CATG 4 cut(s) 202, 688, 787, 1086
HspAI GCGC 5 cut(s) 134, 666, 755, 885, 990
KasI GGCGCC 1 cut(s) 754
KflI GGGWCCC 1 cut(s) 546
Kpn2I TCCGGA 1 cut(s) 109
Kzo9I GATC 2 cut(s) 188, 294
LguI GCTCTTC 2 cut(s) 144, 919
LmnI GCTCC 5 cut(s) 112, 388, 906, 985, 1042
Lsp1109I GCAGC 5 cut(s) 369, 840, 896, 899, 1051
LweI GCATC 2 cut(s) 974, 993
MaeI CTAG 5 cut(s) 243, 582, 672, 918, 954
MaeII ACGT 2 cut(s) 311, 567
MaeIII GTNAC 2 cut(s) 62, 508
MalI GATC 2 cut(s) 190, 296
MbiI CCGCTC 1 cut(s) 882
MboI GATC 2 cut(s) 188, 294
MboII GAAGA 7 cut(s) 41, 161, 538, 547, 673, 855, 906
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 2 cut(s) 188, 294
MhlI GDGCHC 3 cut(s) 219, 393, 573
MlsI TGGCCA 1 cut(s) 649
MluCI AATT 4 cut(s) 651, 766, 790, 1069
MluNI TGGCCA 1 cut(s) 649
Mly113I GGCGCC 1 cut(s) 755
MlyI GAGTC 2 cut(s) 4, 932
MmeI TCCRAC 3 cut(s) 384, 761, 1002
Mox20I TGGCCA 1 cut(s) 649
MroI TCCGGA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 649
MseI TTAA 1 cut(s) 1052
MslI CAYNNNNRTG 2 cut(s) 272, 1001
Msp20I TGGCCA 1 cut(s) 649
MspA1I CMGCKG 1 cut(s) 812
MspR9I CCNGG 8 cut(s) 284, 322, 340, 341, 551, 700, 947, 948
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 2 cut(s) 322, 551
MvnI CGCG 2 cut(s) 51, 668
NarI GGCGCC 1 cut(s) 755
NciI CCSGG 6 cut(s) 284, 340, 341, 700, 947, 948
NcoI CCATGG 1 cut(s) 198
NdeII GATC 2 cut(s) 188, 294
NlaIII CATG 4 cut(s) 202, 688, 787, 1086
NmeAIII GCCGAG 4 cut(s) 327, 421, 779, 920
OliI CACNNNNGTG 1 cut(s) 272
PasI CCCWGGG 1 cut(s) 550
PceI AGGCCT 2 cut(s) 676, 860
PciSI GCTCTTC 2 cut(s) 144, 919
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 3 cut(s) 706, 746, 1091
PflMI CCANNNNNTGG 1 cut(s) 378
PfoI TCCNGGA 1 cut(s) 698
PleI GAGTC 2 cut(s) 4, 932
PluTI GGCGCC 1 cut(s) 758
PmaCI CACGTG 1 cut(s) 312
PmlI CACGTG 1 cut(s) 312
PpsI GAGTC 2 cut(s) 4, 932
Ppu21I YACGTR 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 546
Psp6I CCWGG 2 cut(s) 320, 549
PspCI CACGTG 1 cut(s) 312
PspGI CCWGG 2 cut(s) 320, 549
PspPI GGNCC 7 cut(s) 84, 160, 259, 280, 286, 546, 943
PspPPI RGGWCCY 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 1006
PsuI RGATCY 2 cut(s) 188, 294
RseI CAYNNNNRTG 2 cut(s) 272, 1001
SalI GTCGAC 1 cut(s) 7
SapI GCTCTTC 2 cut(s) 144, 919
SaqAI TTAA 1 cut(s) 1052
Sau3AI GATC 2 cut(s) 188, 294
Sau96I GGNCC 7 cut(s) 84, 160, 259, 280, 286, 546, 943
SchI GAGTC 2 cut(s) 4, 932
ScrFI CCNGG 8 cut(s) 284, 322, 340, 341, 551, 700, 947, 948
SduI GDGCHC 3 cut(s) 219, 393, 573
SfaNI GCATC 2 cut(s) 974, 993
SfcI CTRYAG 1 cut(s) 58
SfoI GGCGCC 1 cut(s) 756
SinI GGWCC 4 cut(s) 84, 160, 259, 546
SmaI CCCGGG 2 cut(s) 341, 948
SmiMI CAYNNNNRTG 2 cut(s) 272, 1001
SpeI ACTAGT 1 cut(s) 953
Sse9I AATT 4 cut(s) 651, 766, 790, 1069
SseBI AGGCCT 2 cut(s) 676, 860
SspDI GGCGCC 1 cut(s) 754
SspMI CTAG 5 cut(s) 243, 582, 672, 918, 954
StuI AGGCCT 2 cut(s) 676, 860
StyD4I CCNGG 8 cut(s) 282, 320, 338, 339, 549, 698, 945, 946
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 5 cut(s) 62, 174, 365, 503, 932
TaiI ACGT 2 cut(s) 314, 570
TaqI TCGA 5 cut(s) 8, 254, 561, 872, 878
TaqII GACCGA 1 cut(s) 442
TasI AATT 4 cut(s) 651, 766, 790, 1069
TauI GCSGC 5 cut(s) 320, 462, 671, 885, 974
TfiI GAWTC 3 cut(s) 706, 746, 1091
Tru1I TTAA 1 cut(s) 1052
Tru9I TTAA 1 cut(s) 1052
TscAI CASTG 2 cut(s) 171, 982
TseI GCWGC 5 cut(s) 382, 828, 887, 909, 1064
TspDTI ATGAA 3 cut(s) 17, 158, 673
TspMI CCCGGG 2 cut(s) 339, 946
TspRI CASTG 2 cut(s) 171, 982
Van91I CCANNNNNTGG 1 cut(s) 378
VneI GTGCAC 1 cut(s) 569
VpaK11BI GGWCC 4 cut(s) 84, 160, 259, 546
XapI RAATTY 1 cut(s) 1069
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmaI CCCGGG 2 cut(s) 339, 946
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 5 cut(s) 243, 582, 672, 918, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.