Rh1AG406700
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009929
Physical Location & Seq
Forward (+)
63489320 .. 63490919
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG406700.1

Sequence Viewer

Length: 987 bp
ATGGAACCAAATCAAAGGCAGAGTCTTGAAGAAACCGACGGGATCACGAACCCATCAGTTTCCGGCCAACAATTTCCGGCGGTGGCGAAGAAAGAAGAGTTCGAAGATGGGTCCCTCTCGATGGGTCTTATCCCGGTTCCGGCACCGGCGAAACCGGTGGTGAAGCGGTCGTCGACAAAGGACCGCCACACAAAGGTGGAGGGCCGCGGCCGGAGGGTCCGAATGCCCGCCGCCTGTGCGGCCCGGGTTTTCCAGCTGACCCGAGAACTCGGCCACAAGTCCGACGGCGAAACCATCAGGTGGCTCCTCGAGCACGCCGAGCCGGCGATAATCGCAGCCACCGGTACCGGCACAGTCCCGGCGATCGCCGTCTCCGTCTGTGGCACGCTCAAGATTCCGACGAGTTCTCTGGCGAACCCGAATGGAGAGGTCTCTGAGCTTCCGAGAAAGAAGAGAAAGCTACATTGCAATAGTGATTTTGTTGATGTGGAGGAATTGAGATCAATTTCGAGTGGCTTGGCGCCGATAGCTCCGGTGAACTACGGCGGCGGTGGCGGTGGGGCTTTGTTCCCTATGTGGCAATTTGGGGCGAATGTTCCGTTCTTCATGTTCCCAAACTCTGGTTGGGCTATTCCTTCGGATTCAGTTTCAGGCCACACCATTTTCGATTTGCAAGGAAGGCCTATATCGAACTTCCCCGTCACAGCATTGCAATCTGGGGTTCAAGTTTGTGGTGATGTTGATGTGCAGGCCACTTCTGGTTCGATTTCGAGTGGTGGTGGTGGTGGTGGTGGGAGCGGTTCGACTAGTTTGGGAGCCAGTAATAGTAATGCGGTTACTAGTAGTGACACTAGTGCTACAACAGCTGCTCCAATTAGTCATAGTCAGTTGCTGAGGGACTTTTCTTTGGATACTTTGGACAAGAGGGAGCTTCAGTTCTTGGGTGGTCTCTGTGGAAATTCAGAAGCTCAATACTCAAAGCCTTGA

Protein Analysis

328

Amino Acids

34.21

Weight (kDa)

6.32

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 58 - 126 6.2e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 3 cut(s) 142, 344, 520
AccB7I CCANNNNNTGG 2 cut(s) 300, 620
AccBSI CCGCTC 1 cut(s) 798
AccI GTMKAC 1 cut(s) 173
AccII CGCG 1 cut(s) 207
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 3 cut(s) 64, 208, 271
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 1 cut(s) 917
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
AgeI ACCGGT 2 cut(s) 154, 341
AgsI TTSAA 2 cut(s) 29, 725
AhlI ACTAGT 3 cut(s) 806, 839, 851
AleI CACNNNNGTG 1 cut(s) 194
AloI GAACNNNNNNTCC 2 cut(s) 920, 952
AluBI AGCT 7 cut(s) 256, 439, 460, 530, 866, 931, 968
AluI AGCT 7 cut(s) 256, 439, 460, 530, 866, 931, 968
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 376, 436, 953
AlwI GGATC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 892
Ama87I CYCGRG 3 cut(s) 243, 261, 308
AoxI GGCC 8 cut(s) 64, 202, 208, 240, 271, 652, 680, 750
ApeKI GCWGC 2 cut(s) 335, 866
ApoI RAATTY 1 cut(s) 958
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AsiGI ACCGGT 2 cut(s) 154, 341
AsiSI GCGATCGC 1 cut(s) 366
Asp718I GGTACC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 5 cut(s) 111, 181, 202, 217, 241
AsuC2I CCSGG 4 cut(s) 134, 244, 245, 359
AsuHPI GGTGA 3 cut(s) 172, 547, 746
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 3 cut(s) 243, 261, 308
AvaII GGWCC 3 cut(s) 111, 181, 217
BanI GGYRCC 3 cut(s) 142, 344, 520
Bbv12I GWGCWC 1 cut(s) 315
BbvCI CCTCAGC 1 cut(s) 893
BbvI GCAGC 2 cut(s) 347, 853
BccI CCATC 4 cut(s) 61, 101, 115, 302
BceAI ACGGC 3 cut(s) 301, 353, 559
BciVI GTATCC 1 cut(s) 904
BcnI CCSGG 4 cut(s) 134, 244, 245, 359
BcoDI GTCTC 3 cut(s) 376, 436, 953
BcuI ACTAGT 3 cut(s) 806, 839, 851
BfaI CTAG 3 cut(s) 807, 840, 852
BfoI RGCGCY 1 cut(s) 524
BfuI GTATCC 1 cut(s) 904
BglI GCCNNNNNGGC 2 cut(s) 239, 323
BisI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 867
BlsI GCNGC 7 cut(s) 206, 209, 232, 241, 337, 548, 868
Bme1390I CCNGG 4 cut(s) 134, 244, 245, 359
Bme18I GGWCC 3 cut(s) 111, 181, 217
BmeT110I CYCGRG 3 cut(s) 243, 261, 308
BmgT120I GGNCC 5 cut(s) 111, 181, 202, 217, 241
BmrFI CCNGG 4 cut(s) 134, 244, 245, 359
Bpu10I CCTNAGC 1 cut(s) 893
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 4 cut(s) 134, 244, 245, 359
BsaHI GRCGYC 1 cut(s) 521
BsaI GGTCTC 2 cut(s) 436, 953
BsaJI CCNNGG 2 cut(s) 205, 243
BsaWI WCCGGW 3 cut(s) 154, 341, 532
BsaXI ACNNNNNCTCC 4 cut(s) 853, 883, 920, 950
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
Bse118I RCCGGY 5 cut(s) 145, 154, 322, 341, 347
Bse1I ACTGG 1 cut(s) 819
Bse3DI GCAATG 2 cut(s) 463, 707
BseDI CCNNGG 2 cut(s) 205, 243
BseLI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
BseMI GCAATG 2 cut(s) 463, 707
BseMII CTCAG 2 cut(s) 426, 884
BseNI ACTGG 1 cut(s) 819
BseRI GAGGAG 1 cut(s) 296
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 347, 853
BsgI GTGCAG 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 3 cut(s) 170, 211, 366
BshFI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BshNI GGYRCC 3 cut(s) 142, 344, 520
BshTI ACCGGT 2 cut(s) 154, 341
BsiEI CGRYCG 3 cut(s) 170, 211, 366
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 3 cut(s) 243, 261, 308
BslFI GGGAC 3 cut(s) 97, 341, 911
BslI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
BsmAI GTCTC 3 cut(s) 376, 436, 953
BsmBI CGTCTC 1 cut(s) 376
BsmFI GGGAC 3 cut(s) 97, 341, 911
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
Bso31I GGTCTC 2 cut(s) 436, 953
BsoBI CYCGRG 3 cut(s) 243, 261, 308
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 3 cut(s) 42, 363, 500
BspANI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BspCNI CTCAG 2 cut(s) 427, 885
BspFNI CGCG 1 cut(s) 207
BspPI GGATC 1 cut(s) 50
BspT104I TTCGAA 1 cut(s) 102
BspT107I GGYRCC 3 cut(s) 142, 344, 520
BspTNI GGTCTC 2 cut(s) 436, 953
BsrBI CCGCTC 1 cut(s) 798
BsrDI GCAATG 2 cut(s) 463, 707
BsrFI RCCGGY 5 cut(s) 145, 154, 322, 341, 347
BsrI ACTGG 1 cut(s) 819
BssAI RCCGGY 5 cut(s) 145, 154, 322, 341, 347
BssECI CCNNGG 2 cut(s) 205, 243
BssMI GATC 3 cut(s) 42, 363, 500
BssNI GRCGYC 1 cut(s) 521
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 2 cut(s) 90, 446
BstACI GRCGYC 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 102
BstC8I GCNNGC 5 cut(s) 228, 315, 324, 386, 750
BstDEI CTNAG 2 cut(s) 435, 893
BstDSI CCRYGG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 524
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 3 cut(s) 45, 366, 503
BstMAI GTCTC 3 cut(s) 376, 436, 953
BstMBI GATC 3 cut(s) 42, 363, 500
BstMCI CGRYCG 3 cut(s) 170, 211, 366
BstSCI CCNGG 4 cut(s) 132, 242, 243, 357
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 347, 853
BstZI CGGCCG 1 cut(s) 208
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BtgI CCRYGG 1 cut(s) 205
Cac8I GCNNGC 5 cut(s) 228, 315, 324, 386, 750
CaiI CAGNNNCTG 1 cut(s) 892
CfoI GCGC 1 cut(s) 523
Cfr10I RCCGGY 5 cut(s) 145, 154, 322, 341, 347
Cfr13I GGNCC 5 cut(s) 111, 181, 202, 217, 241
Cfr42I CCGCGG 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 243
Csp6I GTAC 1 cut(s) 345
CspAI ACCGGT 2 cut(s) 154, 341
CviAII CATG 1 cut(s) 607
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 435, 893
DinI GGCGCC 1 cut(s) 522
DpnI GATC 3 cut(s) 44, 365, 502
DpnII GATC 3 cut(s) 42, 363, 500
EaeI YGGCCR 3 cut(s) 64, 208, 271
EagI CGGCCG 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 90, 446
EarI CTCTTC 2 cut(s) 90, 446
EclXI CGGCCG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 682
Eco31I GGTCTC 2 cut(s) 436, 953
Eco47I GGWCC 3 cut(s) 111, 181, 217
Eco52I CGGCCG 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 917
Eco88I CYCGRG 3 cut(s) 243, 261, 308
EcoO109I RGGNCCY 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 522
EheI GGCGCC 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 376
FaeI CATG 1 cut(s) 610
FaiI YATR 4 cut(s) 575, 608, 686, 882
FaqI GGGAC 3 cut(s) 97, 341, 911
FatI CATG 1 cut(s) 606
FauI CCCGC 1 cut(s) 235
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 867
Fsp4HI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 867
FspBI CTAG 3 cut(s) 807, 840, 852
GlaI GCGC 1 cut(s) 522
GluI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 867
HaeII RGCGCY 1 cut(s) 524
HaeIII GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
HhaI GCGC 1 cut(s) 523
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 1 cut(s) 610
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 3 cut(s) 22, 394, 641
HphI GGTGA 3 cut(s) 172, 547, 746
Hpy166II GTNNAC 2 cut(s) 174, 538
Hpy188I TCNGA 7 cut(s) 221, 283, 399, 436, 444, 640, 964
Hpy188III TCNNGA 4 cut(s) 26, 46, 118, 391
Hpy8I GTNNAC 2 cut(s) 174, 538
Hpy99I CGWCG 4 cut(s) 41, 175, 287, 403
HpyAV CCTTC 2 cut(s) 645, 672
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 4 cut(s) 468, 673, 712, 748
HpyF3I CTNAG 2 cut(s) 435, 893
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 1 cut(s) 610
HspAI GCGC 1 cut(s) 521
KasI GGCGCC 1 cut(s) 520
KflI GGGWCCC 1 cut(s) 111
KpnI GGTACC 1 cut(s) 348
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 3 cut(s) 42, 363, 500
LmnI GCTCC 6 cut(s) 309, 535, 795, 815, 874, 928
Lsp1109I GCAGC 2 cut(s) 347, 853
MaeI CTAG 3 cut(s) 807, 840, 852
MaeIII GTNAC 3 cut(s) 700, 835, 845
MalI GATC 3 cut(s) 44, 365, 502
MbiI CCGCTC 1 cut(s) 798
MboI GATC 3 cut(s) 42, 363, 500
MboII GAAGA 6 cut(s) 41, 100, 107, 116, 463, 595
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 6 cut(s) 71, 494, 504, 581, 873, 958
Mly113I GGCGCC 1 cut(s) 521
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 306, 422
MnlI CCTC 8 cut(s) 125, 193, 207, 317, 421, 484, 888, 918
MroNI GCCGGC 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 3 cut(s) 207, 256, 866
MspR9I CCNGG 4 cut(s) 134, 244, 245, 359
Mva1269I GAATGC 1 cut(s) 228
MvnI CGCG 1 cut(s) 207
NaeI GCCGGC 1 cut(s) 324
NarI GGCGCC 1 cut(s) 521
NciI CCSGG 4 cut(s) 134, 244, 245, 359
NdeII GATC 3 cut(s) 42, 363, 500
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 610
NmeAIII GCCGAG 2 cut(s) 249, 343
NmuCI GTSAC 2 cut(s) 700, 845
NspV TTCGAA 1 cut(s) 102
OliI CACNNNNGTG 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 308
PceI AGGCCT 1 cut(s) 682
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 372
PctI GAATGC 1 cut(s) 228
PdiI GCCGGC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 394, 641
PflMI CCANNNNNTGG 2 cut(s) 300, 620
PinAI ACCGGT 2 cut(s) 154, 341
PkrI GCNGC 7 cut(s) 206, 209, 232, 241, 337, 548, 868
Ple19I CGATCG 1 cut(s) 366
PleI GAGTC 1 cut(s) 30
PluTI GGCGCC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 111
PspPI GGNCC 5 cut(s) 111, 181, 202, 217, 241
PspPPI RGGWCCY 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 892
PvuI CGATCG 1 cut(s) 366
PvuII CAGCTG 2 cut(s) 256, 866
RgaI GCGATCGC 1 cut(s) 366
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 194
SacII CCGCGG 1 cut(s) 208
SalI GTCGAC 1 cut(s) 172
SatI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 867
Sau3AI GATC 3 cut(s) 42, 363, 500
Sau96I GGNCC 5 cut(s) 111, 181, 202, 217, 241
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 4 cut(s) 134, 244, 245, 359
SduI GDGCHC 1 cut(s) 315
SfaAI GCGATCGC 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 308
Sfr303I CCGCGG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 102
SgfI GCGATCGC 1 cut(s) 366
SgrAI CRCCGGYG 1 cut(s) 145
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 3 cut(s) 111, 181, 217
SlaI CTCGAG 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 308, 389
SmoI CTYRAG 2 cut(s) 308, 389
SpeI ACTAGT 3 cut(s) 806, 839, 851
Sse9I AATT 6 cut(s) 71, 494, 504, 581, 873, 958
SseBI AGGCCT 1 cut(s) 682
SspDI GGCGCC 1 cut(s) 520
SspMI CTAG 3 cut(s) 807, 840, 852
StuI AGGCCT 1 cut(s) 682
StyD4I CCNGG 4 cut(s) 132, 242, 243, 357
TaaI ACNGT 1 cut(s) 355
TasI AATT 6 cut(s) 71, 494, 504, 581, 873, 958
TauI GCSGC 5 cut(s) 207, 210, 233, 242, 549
TfiI GAWTC 2 cut(s) 394, 641
TseFI GTSAC 2 cut(s) 700, 845
TseI GCWGC 2 cut(s) 335, 866
Tsp45I GTSAC 2 cut(s) 700, 845
TspDTI ATGAA 1 cut(s) 595
TspGWI ACGGA 2 cut(s) 364, 588
TspMI CCCGGG 1 cut(s) 243
Van91I CCANNNNNTGG 2 cut(s) 300, 620
VpaK11BI GGWCC 3 cut(s) 111, 181, 217
XapI RAATTY 1 cut(s) 958
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XhoI CTCGAG 1 cut(s) 308
XmaI CCCGGG 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 3 cut(s) 807, 840, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.