Prupe.2G288000_v2.0.a1
TCP Family

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
28332482 .. 28335201
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G288000.1

Sequence Viewer

Length: 1149 bp
ATGGAACCGAATCAAAGGCAGAGCCTTGAAGAAAGCAACGAGCTTGAACAGCACAGCAATAGCAGTAGCAACGACAACACCACCTCAGCATCCGACCCATCAGTGGCGGACCCTCCGGAGAAAATATTTCCGTTGACGGCGCCGACGATGAAAGAAGAGCTAACGGACACAGTGCAAGAACTGGACGAAGGATCTCTGCCTATGGGTCTTATTCAGGTGCCGGTTCCTACGTCGTCGGAGAAACAAGTGGTGGCGGCAAAGAGGTCGTCGAAGGACCGCCACACGAAGGTGGAGGGCCGGGGCCGGAGGATCCGAATGCCCGCCACGTGTGCGGCCAGGATTTTTCAACTGACCCGAGAACTTGGCCACAAGTCCGACGGCGAAACCATAAGGTGGCTGCTCGAGCACGCCGAGCCTGCTATTATGCAAGCCACGGGCACAGGCACAGTACCCGCCATTGCCGTCTCCGTCGGTGGCACTCTAAAGATACCCACAACTTCACCGGCGAGACCCAACGGTGAGATTACTGAAATACCCAGAAAGCGACGGAAGAGAGGGTCGAACAGTGAGTTTGTTGATGTGCATGAGCAGAGCTCTGTGTCTAGTGGGTTGGCCCCAATGAGCTATGGCGGCGGTGGCGGTGGCAGTGGCGGTGGGGCACATGGGTTGGTGCCCATGTGGCAAGTTGGGGCAACTGGTGCGGCTGGGCCTTTCTTCATGTTCCCAAACAACGGGGCTATGAACACAAACCAGCCCCAGCTTTGGGCTGTTCCAGCTGCGGATGCTGCAACCCCGATTTTCAATTTCCAAGCAAGACCCATCTCCAATTTCTTGTCGGCTTTTCAACCAGGTGTTCACGTTGTTGGTGGGGATGTGCAGTTGCAGGCCTCTTCGGGTTCGATTTCGAGCGGTGCAACTTCGGGTTCTGGGGGGAGCTGTTCGTCTAGTTTGGGACCCAGTTTGGGCTCAGCCTCAGGAACCAGAGCTAATAAGAACACCATTTCTACTGGTAGTGGGACTGGTGCTAGTGCTGCTGCAGCTGGTGCTACAACAACTCAGATGTTGAGGGATTTTTCTTTGGAGATTTATGATAAGAGAGAGCTTCAGTTCATGGGTGCAAATTCACAAACACCATACTCTAAGCCTTAG

Protein Analysis

383

Amino Acids

39.73

Weight (kDa)

6.4

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 139, 217, 670
AccB7I CCANNNNNTGG 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 909
AccIII TCCGGA 1 cut(s) 115
AclWI GGATC 3 cut(s) 199, 304, 317
AcoI YGGCCR 2 cut(s) 333, 364
AcsI RAATTY 1 cut(s) 1120
AcuI CTGAAG 1 cut(s) 1088
AcvI CACGTG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 7 cut(s) 103, 286, 393, 731, 762, 763, 962
AflIII ACRYGT 1 cut(s) 326
AgsI TTSAA 5 cut(s) 29, 47, 347, 802, 845
AjnI CCWGG 2 cut(s) 335, 847
AleI CACNNNNGTG 1 cut(s) 287
Alw21I GWGCWC 2 cut(s) 408, 596
Alw26I GTCTC 2 cut(s) 469, 502
AlwI GGATC 3 cut(s) 199, 304, 317
Ama87I CYCGRG 2 cut(s) 354, 401
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 7 cut(s) 295, 301, 333, 364, 612, 707, 885
ApeKI GCWGC 6 cut(s) 397, 776, 785, 1031, 1034, 1037
ApoI RAATTY 1 cut(s) 1120
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 7 cut(s) 109, 274, 295, 301, 613, 707, 953
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 492, 530
AvaI CYCGRG 2 cut(s) 354, 401
AvaII GGWCC 3 cut(s) 109, 274, 953
AxyI CCTNAGG 1 cut(s) 973
BaeGI GKGCMC 3 cut(s) 440, 661, 675
BalI TGGCCA 1 cut(s) 366
BamHI GGATCC 1 cut(s) 309
BanI GGYRCC 3 cut(s) 139, 217, 670
BanII GRGCYC 2 cut(s) 596, 968
BbrPI CACGTG 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 408, 596
BbvCI CCTCAGC 1 cut(s) 85
BbvI GCAGC 6 cut(s) 384, 763, 772, 1018, 1021, 1049
BccI CCATC 2 cut(s) 106, 827
BceAI ACGGC 3 cut(s) 153, 394, 446
BcgI CGANNNNNNTGC 2 cut(s) 246, 280
BciT130I CCWGG 2 cut(s) 337, 849
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 469, 502
BfaI CTAG 3 cut(s) 603, 945, 1026
BfmI CTRYAG 1 cut(s) 1035
BfoI RGCGCY 1 cut(s) 143
BglI GCCNNNNNGGC 1 cut(s) 679
BlpI GCTNAGC 1 cut(s) 967
Bme1390I CCNGG 3 cut(s) 299, 337, 849
Bme18I GGWCC 3 cut(s) 109, 274, 953
BmeT110I CYCGRG 2 cut(s) 354, 401
BmgT120I GGNCC 7 cut(s) 109, 274, 295, 301, 613, 707, 953
BmrFI CCNGG 3 cut(s) 299, 337, 849
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 2 cut(s) 98, 772
BmuI ACTGGG 1 cut(s) 951
BplI GAGNNNNNCTC 2 cut(s) 578, 610
Bpu10I CCTNAGC 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 967
BpuMI CCSGG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 298, 432
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 7 cut(s) 103, 286, 393, 731, 762, 763, 962
Bse118I RCCGGY 2 cut(s) 220, 502
Bse1I ACTGG 5 cut(s) 186, 700, 957, 1012, 1024
Bse21I CCTNAGG 1 cut(s) 973
Bse3DI GCAATG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 2 cut(s) 337, 849
BseDI CCNNGG 2 cut(s) 298, 432
BseGI GGATG 3 cut(s) 89, 787, 877
BseLI CCNNNNNNNGG 7 cut(s) 103, 286, 393, 731, 762, 763, 962
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 4 cut(s) 99, 981, 987, 1070
BseNI ACTGG 5 cut(s) 186, 700, 957, 1012, 1024
BseSI GKGCMC 3 cut(s) 440, 661, 675
BseXI GCAGC 6 cut(s) 384, 763, 772, 1018, 1021, 1049
BseYI CCCAGC 2 cut(s) 704, 756
BsgI GTGCAG 1 cut(s) 896
BshFI GGCC 7 cut(s) 297, 303, 335, 366, 614, 709, 887
BshNI GGYRCC 3 cut(s) 139, 217, 670
BsiHKAI GWGCWC 2 cut(s) 408, 596
BsiHKCI CYCGRG 2 cut(s) 354, 401
BsiSI CCGG 5 cut(s) 116, 221, 298, 304, 503
BslFI GGGAC 2 cut(s) 966, 1030
BslI CCNNNNNNNGG 7 cut(s) 103, 286, 393, 731, 762, 763, 962
BsmAI GTCTC 2 cut(s) 469, 502
BsmBI CGTCTC 1 cut(s) 469
BsmFI GGGAC 2 cut(s) 966, 1030
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 7 cut(s) 297, 303, 335, 366, 614, 709, 887
Bso31I GGTCTC 1 cut(s) 502
BsoBI CYCGRG 2 cut(s) 354, 401
Bsp1286I GDGCHC 6 cut(s) 408, 440, 596, 661, 675, 968
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 2 cut(s) 191, 309
Bsp1720I GCTNAGC 1 cut(s) 967
BspANI GGCC 7 cut(s) 297, 303, 335, 366, 614, 709, 887
BspCNI CTCAG 4 cut(s) 98, 980, 986, 1069
BspEI TCCGGA 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 1039
BspPI GGATC 3 cut(s) 199, 304, 317
BspQI GCTCTTC 1 cut(s) 150
BspT107I GGYRCC 3 cut(s) 139, 217, 670
BspTNI GGTCTC 1 cut(s) 502
BsrBI CCGCTC 1 cut(s) 909
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 2 cut(s) 220, 502
BsrI ACTGG 5 cut(s) 186, 700, 957, 1012, 1024
BssAI RCCGGY 2 cut(s) 220, 502
BssECI CCNNGG 2 cut(s) 298, 432
BssMI GATC 2 cut(s) 191, 309
BssNI GRCGYC 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 337, 849
Bst4CI ACNGT 4 cut(s) 172, 448, 518, 566
Bst6I CTCTTC 3 cut(s) 150, 545, 895
BstACI GRCGYC 1 cut(s) 140
BstAPI GCANNNNNTGC 2 cut(s) 698, 1043
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 5 cut(s) 321, 408, 417, 429, 885
BstDEI CTNAG 6 cut(s) 85, 967, 973, 1056, 1140, 1146
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 3 cut(s) 89, 787, 877
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 194, 312
BstMAI GTCTC 2 cut(s) 469, 502
BstMBI GATC 2 cut(s) 191, 309
BstNI CCWGG 2 cut(s) 337, 849
BstSCI CCNGG 3 cut(s) 297, 335, 847
BstSFI CTRYAG 1 cut(s) 1035
BstSLI GKGCMC 3 cut(s) 440, 661, 675
BstV1I GCAGC 6 cut(s) 384, 763, 772, 1018, 1021, 1049
BstX2I RGATCY 2 cut(s) 191, 309
BstYI RGATCY 2 cut(s) 191, 309
Bsu36I CCTNAGG 1 cut(s) 973
BsuRI GGCC 7 cut(s) 297, 303, 335, 366, 614, 709, 887
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 3 cut(s) 89, 787, 877
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 4 cut(s) 108, 177, 571, 652
Cac8I GCNNGC 5 cut(s) 321, 408, 417, 429, 885
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 2 cut(s) 220, 502
Cfr13I GGNCC 7 cut(s) 109, 274, 295, 301, 613, 707, 953
CsiI ACCWGGT 1 cut(s) 847
Csp6I GTAC 1 cut(s) 449
CviAII CATG 5 cut(s) 584, 662, 676, 718, 1111
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 6 cut(s) 85, 967, 973, 1056, 1140, 1146
DinI GGCGCC 1 cut(s) 141
DpnI GATC 2 cut(s) 193, 311
DpnII GATC 2 cut(s) 191, 309
EaeI YGGCCR 2 cut(s) 333, 364
Eam1104I CTCTTC 3 cut(s) 150, 545, 895
EarI CTCTTC 3 cut(s) 150, 545, 895
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 887
Eco24I GRGCYC 2 cut(s) 596, 968
Eco31I GGTCTC 1 cut(s) 502
Eco47I GGWCC 3 cut(s) 109, 274, 953
Eco53kI GAGCTC 1 cut(s) 594
Eco57I CTGAAG 1 cut(s) 1088
Eco72I CACGTG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 973
Eco88I CYCGRG 2 cut(s) 354, 401
EcoICRI GAGCTC 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 953
EcoRII CCWGG 2 cut(s) 335, 847
EcoT38I GRGCYC 2 cut(s) 596, 968
EgeI GGCGCC 1 cut(s) 141
EheI GGCGCC 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 469
FaeI CATG 5 cut(s) 587, 665, 679, 721, 1114
FaqI GGGAC 2 cut(s) 966, 1030
FatI CATG 5 cut(s) 583, 661, 675, 717, 1110
FauI CCCGC 2 cut(s) 328, 460
FokI GGATG 3 cut(s) 76, 794, 884
FriOI GRGCYC 2 cut(s) 596, 968
FspBI CTAG 3 cut(s) 603, 945, 1026
GlaI GCGC 1 cut(s) 141
GsaI CCCAGC 2 cut(s) 708, 760
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 7 cut(s) 297, 303, 335, 366, 614, 709, 887
HapII CCGG 5 cut(s) 116, 221, 298, 304, 503
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 5 cut(s) 587, 665, 679, 721, 1114
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 1 cut(s) 10
HpaII CCGG 5 cut(s) 116, 221, 298, 304, 503
HphI GGTGA 2 cut(s) 492, 530
Hpy166II GTNNAC 2 cut(s) 135, 856
Hpy188I TCNGA 5 cut(s) 94, 238, 314, 376, 1059
Hpy188III TCNNGA 2 cut(s) 116, 975
Hpy8I GTNNAC 2 cut(s) 135, 856
Hpy99I CGWCG 7 cut(s) 148, 235, 238, 271, 380, 473, 549
HpyAV CCTTC 3 cut(s) 182, 265, 280
HpyCH4III ACNGT 4 cut(s) 172, 448, 518, 566
HpyCH4IV ACGT 3 cut(s) 230, 326, 858
HpyCH4V TGCA 9 cut(s) 175, 427, 583, 788, 877, 883, 914, 1037, 1118
HpyF3I CTNAG 6 cut(s) 85, 967, 973, 1056, 1140, 1146
HpySE526I ACGT 3 cut(s) 230, 326, 858
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 5 cut(s) 587, 665, 679, 721, 1114
HspAI GCGC 1 cut(s) 140
KasI GGCGCC 1 cut(s) 139
KflI GGGWCCC 1 cut(s) 953
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 191, 309
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 933
Lsp1109I GCAGC 6 cut(s) 384, 763, 772, 1018, 1021, 1049
LweI GCATC 2 cut(s) 98, 772
MabI ACCWGGT 1 cut(s) 847
MaeI CTAG 3 cut(s) 603, 945, 1026
MaeII ACGT 3 cut(s) 230, 326, 858
MalI GATC 2 cut(s) 193, 311
MbiI CCGCTC 1 cut(s) 909
MboI GATC 2 cut(s) 191, 309
MboII GAAGA 5 cut(s) 41, 167, 562, 706, 882
MflI RGATCY 2 cut(s) 191, 309
MhlI GDGCHC 6 cut(s) 408, 440, 596, 661, 675, 968
MlsI TGGCCA 1 cut(s) 366
MluCI AATT 3 cut(s) 802, 826, 1120
MluNI TGGCCA 1 cut(s) 366
Mly113I GGCGCC 1 cut(s) 140
MmeI TCCRAC 3 cut(s) 117, 216, 399
MnlI CCTC 9 cut(s) 94, 123, 255, 286, 300, 548, 898, 982, 1059
Mox20I TGGCCA 1 cut(s) 366
MroI TCCGGA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 366
MspA1I CMGCKG 2 cut(s) 776, 1040
MspI CCGG 5 cut(s) 116, 221, 298, 304, 503
MspR9I CCNGG 3 cut(s) 299, 337, 849
Mva1269I GAATGC 1 cut(s) 321
MvaI CCWGG 2 cut(s) 337, 849
NarI GGCGCC 1 cut(s) 140
NciI CCSGG 1 cut(s) 299
NdeII GATC 2 cut(s) 191, 309
NlaIII CATG 5 cut(s) 587, 665, 679, 721, 1114
NmeAIII GCCGAG 1 cut(s) 436
OliI CACNNNNGTG 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 401
PceI AGGCCT 1 cut(s) 887
PciSI GCTCTTC 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 143, 408
PctI GAATGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 393
PluTI GGCGCC 1 cut(s) 143
PmaCI CACGTG 1 cut(s) 327
PmlI CACGTG 1 cut(s) 327
Ppu21I YACGTR 1 cut(s) 327
PpuMI RGGWCCY 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 596
Psp5II RGGWCCY 1 cut(s) 953
Psp6I CCWGG 2 cut(s) 335, 847
PspCI CACGTG 1 cut(s) 327
PspFI CCCAGC 2 cut(s) 704, 756
PspGI CCWGG 2 cut(s) 335, 847
PspPI GGNCC 7 cut(s) 109, 274, 295, 301, 613, 707, 953
PspPPI RGGWCCY 1 cut(s) 953
PspXI VCTCGAGB 1 cut(s) 401
PstI CTGCAG 1 cut(s) 1039
PsuI RGATCY 2 cut(s) 191, 309
PvuII CAGCTG 2 cut(s) 776, 1040
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 287
SacI GAGCTC 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 191, 309
Sau96I GGNCC 7 cut(s) 109, 274, 295, 301, 613, 707, 953
ScrFI CCNGG 3 cut(s) 299, 337, 849
SduI GDGCHC 6 cut(s) 408, 440, 596, 661, 675, 968
SexAI ACCWGGT 1 cut(s) 847
SfaNI GCATC 2 cut(s) 98, 772
SfcI CTRYAG 1 cut(s) 1035
SfoI GGCGCC 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 401
SgrAI CRCCGGYG 1 cut(s) 502
SinI GGWCC 3 cut(s) 109, 274, 953
SlaI CTCGAG 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 3 cut(s) 802, 826, 1120
SseBI AGGCCT 1 cut(s) 887
SspDI GGCGCC 1 cut(s) 139
SspI AATATT 1 cut(s) 126
SspMI CTAG 3 cut(s) 603, 945, 1026
SstI GAGCTC 1 cut(s) 596
StuI AGGCCT 1 cut(s) 887
StyD4I CCNGG 3 cut(s) 297, 335, 847
TaaI ACNGT 4 cut(s) 172, 448, 518, 566
TaiI ACGT 3 cut(s) 233, 329, 861
TaqI TCGA 5 cut(s) 269, 402, 560, 899, 905
TasI AATT 3 cut(s) 802, 826, 1120
TauI GCSGC 4 cut(s) 257, 335, 633, 704
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 4 cut(s) 108, 177, 571, 652
TseI GCWGC 6 cut(s) 397, 776, 785, 1031, 1034, 1037
TspDTI ATGAA 4 cut(s) 164, 706, 755, 1099
TspGWI ACGGA 4 cut(s) 120, 179, 457, 562
TspRI CASTG 4 cut(s) 108, 177, 571, 652
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 3 cut(s) 109, 274, 953
XapI RAATTY 1 cut(s) 1120
XhoI CTCGAG 1 cut(s) 401
XspI CTAG 3 cut(s) 603, 945, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.