Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009929

Physical Location & Seq

Genomic Coordinates Reverse (-)

4226487 .. 4227467

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAACCAAATCAAAGGCAGAGTCTTGAAGAAACCGACGGGATCACGAACCCATCAGTTTCCGGCCAACAATTTCCGGCGGTGGCGAAGAAAGAAGAGTTCGAAGATGGGTGGCTCCTCGAGCACGCCGAGCCGGCGATAATCGCAGCAACCGGTACCGGCACGGTCCCGGCGATCGCCGTCTCCGTAGGCGGCACGCTCAAGATTCCGACGAGTTCTCTGGCGAACCCAAATGGAGAGGTCTCTGAGCTTCCGAGAAAGAAGAGAAAGCTACATTGCAATAGTGATTTTGTTGATGTGGAGGAATTGAGCTCAATTTCGAGTGGCTTGGCGCCGATAGCTCCGGTGAACTACGGCGGCGGTGGCGGTGGGGCTTTGTTGCCTATGTGGCAATTTGGGGCGAATGTTCCGTTCTTCATGTTCCCAAACTCTAGTTGGGCTATTCCTTCGGATTCAGTTTCAGGCCACACCATTTTCGATTTGCAAGGAAGGCCTATATCGAACTTCCCTGTCACAGCTTTGCAATCAGGAGTTCAAGCTCATGGTTGTGGCGATGTGCAGGCCACTTCTGGTTCGATTTCGAGTGGTGGTGGTGGTGGGAGCTGTTCGACTAGTTTGGGAGCCAGTAATAGTAATGCAGTTACTAGTAGTGACACCAGTGCTACAACAGCTGCTCGGATTAGTCATACTCAGTTGCTGAGGGACTTGTCTTTGGATACTTTGGACAAGAGGGAGCTTCAGTTCTTGGGTGGTCTCTGTGGAAATTCAGAAGCTCAATACTCAAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

264

Amino Acids

27.12

Weight (kDa)

4.87

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51910 AT5G51910
fragaria_vesca	FvH4_7g28770
malus_domestica	MD00G1004900.v1.1 MD01G1194100.v1.1
prunus_persica	Prupe.2G288000_v2.0.a1
pyrus_communis	pycom01g20440 pycom07g23990
rosa_chinensis	RchiOBHm_Chr1g0376331
rosa_laevigata	RLG00000026611
rosa_multiflora	Rmu_co8276131.1_g000001 Rmu_sc0005594.1_g000020 Rmu_sc0016074.1_g000003 Rmu_ssc0000116.1_g000063 Rmu_ssc0000116.1_g000064
rosa_roxburghii	Rroxscaffold_4G00282200
rosa_samantha	Rh1AG406700 Rh1BG370700 Rh1CG383500 Rh1DG400500
rosa_wichuraiana	Rw1G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	2 cut(s)	155, 331
AciI	CCGC	5 cut(s)	80, 192, 357, 360, 366
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	1 cut(s)	722
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	1 cut(s)	157
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	29, 536
AhlI	ACTAGT	2 cut(s)	611, 644
AloI	GAACNNNNNNTCC	2 cut(s)	725, 757
Alw21I	GWGCWC	2 cut(s)	126, 314
Alw26I	GTCTC	3 cut(s)	187, 247, 758
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	697
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	4 cut(s)	64, 463, 491, 561
ApeKI	GCWGC	2 cut(s)	146, 671
ApoI	RAATTY	1 cut(s)	763
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AsiGI	ACCGGT	1 cut(s)	152
AsiSI	GCGATCGC	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	2 cut(s)	155, 331
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	126, 314
BbvCI	CCTCAGC	1 cut(s)	698
BbvI	GCAGC	2 cut(s)	158, 658
BccI	CCATC	2 cut(s)	61, 101
BceAI	ACGGC	2 cut(s)	164, 370
BciVI	GTATCC	1 cut(s)	709
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	187, 247, 758
BcuI	ACTAGT	2 cut(s)	611, 644
BfaI	CTAG	3 cut(s)	432, 612, 645
BfoI	RGCGCY	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	709
BglI	GCCNNNNNGGC	2 cut(s)	134, 388
BisI	GCNGC	4 cut(s)	147, 193, 358, 672
BlsI	GCNGC	4 cut(s)	148, 194, 359, 673
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	6 cut(s)	6, 116, 157, 168, 333, 622
BmrFI	CCNGG	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	698
Bpu14I	TTCGAA	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	332
BsaI	GGTCTC	2 cut(s)	247, 758
BsaWI	WCCGGW	2 cut(s)	152, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bse118I	RCCGGY	3 cut(s)	133, 152, 158
Bse1I	ACTGG	2 cut(s)	624, 657
Bse3DI	GCAATG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	3 cut(s)	237, 689, 704
BseNI	ACTGG	2 cut(s)	624, 657
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	158, 658
BsgI	GTGCAG	1 cut(s)	578
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	66, 465, 493, 563
BshNI	GGYRCC	2 cut(s)	155, 331
BshTI	ACCGGT	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	126, 314
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	7 cut(s)	63, 77, 134, 153, 159, 170, 344
BslFI	GGGAC	2 cut(s)	152, 716
BsmAI	GTCTC	3 cut(s)	187, 247, 758
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	152, 716
BsnI	GGCC	4 cut(s)	66, 465, 493, 563
Bso31I	GGTCTC	2 cut(s)	247, 758
BsoBI	CYCGRG	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	126, 314
Bsp143I	GATC	2 cut(s)	42, 174
BspACI	CCGC	5 cut(s)	80, 192, 357, 360, 366
BspANI	GGCC	4 cut(s)	66, 465, 493, 563
BspCNI	CTCAG	3 cut(s)	238, 690, 703
BspLI	GGNNCC	6 cut(s)	6, 116, 157, 168, 333, 622
BspPI	GGATC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	102
BspT107I	GGYRCC	2 cut(s)	155, 331
BspTNI	GGTCTC	2 cut(s)	247, 758
BsrDI	GCAATG	1 cut(s)	274
BsrFI	RCCGGY	3 cut(s)	133, 152, 158
BsrI	ACTGG	2 cut(s)	624, 657
BssAI	RCCGGY	3 cut(s)	133, 152, 158
BssMI	GATC	2 cut(s)	42, 174
BssNI	GRCGYC	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	90, 257
BstACI	GRCGYC	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	102
BstC8I	GCNNGC	4 cut(s)	126, 135, 197, 561
BstDEI	CTNAG	3 cut(s)	246, 690, 698
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	45, 177
BstMAI	GTCTC	3 cut(s)	187, 247, 758
BstMBI	GATC	2 cut(s)	42, 174
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	9 cut(s)	121, 130, 134, 143, 338, 363, 388, 490, 668
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	158, 658
BsuI	GTATCC	1 cut(s)	709
BsuRI	GGCC	4 cut(s)	66, 465, 493, 563
BtgZI	GCGATG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	664
Cac8I	GCNNGC	4 cut(s)	126, 135, 197, 561
CaiI	CAGNNNCTG	1 cut(s)	697
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	3 cut(s)	133, 152, 158
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	156
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	2 cut(s)	418, 542
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	3 cut(s)	246, 690, 698
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	2 cut(s)	44, 176
DpnII	GATC	2 cut(s)	42, 174
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	90, 257
EarI	CTCTTC	2 cut(s)	90, 257
Ecl136II	GAGCTC	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	2 cut(s)	247, 758
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	722
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	314
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	2 cut(s)	421, 545
FaiI	YATR	5 cut(s)	386, 419, 497, 543, 687
FaqI	GGGAC	2 cut(s)	152, 716
FatI	CATG	2 cut(s)	417, 541
Fnu4HI	GCNGC	4 cut(s)	147, 193, 358, 672
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	147, 193, 358, 672
FspBI	CTAG	3 cut(s)	432, 612, 645
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	4 cut(s)	147, 193, 358, 672
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	4 cut(s)	66, 465, 493, 563
HapII	CCGG	7 cut(s)	63, 77, 134, 153, 159, 170, 344
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	421, 545
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	3 cut(s)	22, 205, 452
HpaII	CCGG	7 cut(s)	63, 77, 134, 153, 159, 170, 344
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	6 cut(s)	210, 247, 255, 451, 678, 769
Hpy188III	TCNNGA	4 cut(s)	26, 46, 202, 528
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	2 cut(s)	41, 214
HpyAV	CCTTC	2 cut(s)	456, 483
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	5 cut(s)	279, 484, 523, 559, 638
HpyF10VI	GCNNNNNNNGC	9 cut(s)	121, 130, 134, 143, 338, 363, 388, 490, 668
HpyF3I	CTNAG	3 cut(s)	246, 690, 698
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	421, 545
HspAI	GCGC	1 cut(s)	332
KasI	GGCGCC	1 cut(s)	331
KpnI	GGTACC	1 cut(s)	159
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	42, 174
LmnI	GCTCC	5 cut(s)	120, 346, 600, 620, 733
Lsp1109I	GCAGC	2 cut(s)	158, 658
MaeI	CTAG	3 cut(s)	432, 612, 645
MaeIII	GTNAC	3 cut(s)	511, 640, 650
MalI	GATC	2 cut(s)	44, 176
MboI	GATC	2 cut(s)	42, 174
MboII	GAAGA	6 cut(s)	41, 100, 107, 116, 274, 406
MhlI	GDGCHC	2 cut(s)	126, 314
MluCI	AATT	5 cut(s)	71, 305, 315, 392, 763
Mly113I	GGCGCC	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	128, 232, 295, 693, 723
MroNI	GCCGGC	1 cut(s)	133
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	7 cut(s)	63, 77, 134, 153, 159, 170, 344
MspR9I	CCNGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	9 cut(s)	121, 130, 134, 143, 338, 363, 388, 490, 668
NaeI	GCCGGC	1 cut(s)	135
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	42, 174
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	421, 545
NlaIV	GGNNCC	6 cut(s)	6, 116, 157, 168, 333, 622
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	2 cut(s)	511, 650
NspV	TTCGAA	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 170, 183
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	205, 452
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	4 cut(s)	148, 194, 359, 673
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	1 cut(s)	30
PluTI	GGCGCC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	314
PspN4I	GGNNCC	6 cut(s)	6, 116, 157, 168, 333, 622
PspPI	GGNCC	1 cut(s)	166
PspXI	VCTCGAGB	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	697
PvuI	CGATCG	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	671
RgaI	GCGATCGC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	314
SatI	GCNGC	4 cut(s)	147, 193, 358, 672
Sau3AI	GATC	2 cut(s)	42, 174
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	126, 314
SfaAI	GCGATCGC	1 cut(s)	177
SfoI	GGCGCC	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	119
SfuI	TTCGAA	1 cut(s)	102
SgfI	GCGATCGC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	119, 200
SmoI	CTYRAG	2 cut(s)	119, 200
SpeI	ACTAGT	2 cut(s)	611, 644
Sse9I	AATT	5 cut(s)	71, 305, 315, 392, 763
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	5 cut(s)	80, 192, 357, 360, 366
SspDI	GGCGCC	1 cut(s)	331
SspMI	CTAG	3 cut(s)	432, 612, 645
SstI	GAGCTC	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	8 cut(s)	102, 120, 320, 477, 500, 575, 581, 608
TasI	AATT	5 cut(s)	71, 305, 315, 392, 763
TauI	GCSGC	2 cut(s)	195, 360
TfiI	GAWTC	2 cut(s)	205, 452
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	2 cut(s)	511, 650
TseI	GCWGC	2 cut(s)	146, 671
Tsp45I	GTSAC	2 cut(s)	511, 650
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	2 cut(s)	175, 399
TspRI	CASTG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	432
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	3 cut(s)	432, 612, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.