Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000116.1

Orthogroup ID

OG0009929

Physical Location & Seq

Genomic Coordinates Forward (+)

329240 .. 330358

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000116.1_g000064.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggaaccaaatcaaaggcagagtcttgaagaaaccgacgggatcacgaacccatcagtttccggccaacaatttccggcggtggcgaagaaagaagagttcgatgatgggtccctctcgatgggtcttatcccggttccggcaccggcgaaaccggtggtgaagcggtcgtcgacgaaggaccgccacacaaaggtggagggccgcggccggagggtccgaatgcccgccgcctgtgcggcccgggttttccagctgacccgagaactcggccacaagtccgacggcgaaaccatcaggtggctcctcgagcacgccgagccggcgataatcgcagccaccggtaccggcacagtcccggcgatcgccgtctccgtctgtggcacgctcaagattccgacgagttctctggcgaacccgaatggagaggtctctgagcttccgagaaagaagagaaagctacattgcaatagtgattttgttgatgtggaggaattgagctcaatttcgagtggcttggcgccgatagctccggtgaactacggcggcggtggcggtggggctttgttccctatgtggcaatttggggcgaatgttccgttcttcatgttcccaaactctggttgggctattccttcggattcagtttcaggccacaccattttcgatttgcaaggaaggcctatatcgaacttccccgtcacagcattgcaatctggggttcaagtttgtggtgatgttgatgtgcaggccacttctggttcgatttcgagtggtggtggtggtgggagcggttcgactagtttgggagccagtaatagtaatgcgaagggtttgggctttctccaccgccggatgggtctgtttgatcgtgcggcgggaagcaaaagactacgtggcaaatttggccgttattcagcggttaagtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

310

Amino Acids

32.55

Weight (kDa)

9.45

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51910 AT5G51910
fragaria_vesca	FvH4_7g28770
malus_domestica	MD00G1004900.v1.1 MD01G1194100.v1.1
prunus_persica	Prupe.2G288000_v2.0.a1
pyrus_communis	pycom01g20440 pycom07g23990
rosa_chinensis	RchiOBHm_Chr1g0376331
rosa_laevigata	RLG00000026611
rosa_multiflora	Rmu_co8276131.1_g000001 Rmu_sc0005594.1_g000020 Rmu_sc0016074.1_g000003 Rmu_ssc0000116.1_g000063 Rmu_ssc0000116.1_g000064
rosa_roxburghii	Rroxscaffold_4G00282200
rosa_samantha	Rh1AG406700 Rh1BG370700 Rh1CG383500 Rh1DG400500
rosa_wichuraiana	Rw1G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	3 cut(s)	142, 344, 520
AccB7I	CCANNNNNTGG	2 cut(s)	300, 620
AccBSI	CCGCTC	1 cut(s)	792
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	1 cut(s)	207
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	4 cut(s)	64, 208, 271, 907
AcsI	RAATTY	1 cut(s)	902
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	2 cut(s)	346, 929
AfiI	CCNNNNNNNGG	6 cut(s)	121, 139, 193, 300, 620, 856
AgeI	ACCGGT	2 cut(s)	154, 341
AgsI	TTSAA	2 cut(s)	29, 725
AhlI	ACTAGT	1 cut(s)	800
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	5 cut(s)	256, 439, 460, 501, 530
AluI	AGCT	5 cut(s)	256, 439, 460, 501, 530
Alw21I	GWGCWC	2 cut(s)	315, 503
Alw26I	GTCTC	2 cut(s)	376, 436
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	3 cut(s)	243, 261, 308
AoxI	GGCC	9 cut(s)	64, 202, 208, 240, 271, 652, 680, 750, 907
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	902
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AsiGI	ACCGGT	2 cut(s)	154, 341
AsiSI	GCGATCGC	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	5 cut(s)	111, 181, 202, 217, 241
AsuC2I	CCSGG	4 cut(s)	134, 244, 245, 359
AsuHPI	GGTGA	3 cut(s)	172, 547, 746
AvaI	CYCGRG	3 cut(s)	243, 261, 308
AvaII	GGWCC	3 cut(s)	111, 181, 217
BanI	GGYRCC	3 cut(s)	142, 344, 520
BanII	GRGCYC	1 cut(s)	503
Bbv12I	GWGCWC	2 cut(s)	315, 503
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	5 cut(s)	61, 101, 115, 302, 850
BceAI	ACGGC	4 cut(s)	301, 353, 559, 894
BcnI	CCSGG	4 cut(s)	134, 244, 245, 359
BcoDI	GTCTC	2 cut(s)	376, 436
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	1 cut(s)	801
BfoI	RGCGCY	1 cut(s)	524
BglI	GCCNNNNNGGC	2 cut(s)	239, 323
BisI	GCNGC	7 cut(s)	205, 208, 231, 240, 336, 547, 876
BlsI	GCNGC	7 cut(s)	206, 209, 232, 241, 337, 548, 877
BmcAI	AGTACT	1 cut(s)	929
Bme1390I	CCNGG	4 cut(s)	134, 244, 245, 359
Bme18I	GGWCC	3 cut(s)	111, 181, 217
BmeT110I	CYCGRG	3 cut(s)	243, 261, 308
BmgT120I	GGNCC	5 cut(s)	111, 181, 202, 217, 241
BmrFI	CCNGG	4 cut(s)	134, 244, 245, 359
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	4 cut(s)	134, 244, 245, 359
BsaAI	YACGTR	1 cut(s)	896
BsaHI	GRCGYC	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	205, 243
BsaWI	WCCGGW	3 cut(s)	154, 341, 532
Bsc4I	CCNNNNNNNGG	6 cut(s)	121, 139, 193, 300, 620, 856
Bse118I	RCCGGY	5 cut(s)	145, 154, 322, 341, 347
Bse1I	ACTGG	1 cut(s)	813
Bse3DI	GCAATG	2 cut(s)	463, 707
BseDI	CCNNGG	2 cut(s)	205, 243
BseGI	GGATG	1 cut(s)	861
BseLI	CCNNNNNNNGG	6 cut(s)	121, 139, 193, 300, 620, 856
BseMI	GCAATG	2 cut(s)	463, 707
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	813
BseRI	GAGGAG	1 cut(s)	296
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	767
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	3 cut(s)	170, 211, 366
BshFI	GGCC	9 cut(s)	66, 204, 210, 242, 273, 654, 682, 752, 909
BshNI	GGYRCC	3 cut(s)	142, 344, 520
BshTI	ACCGGT	2 cut(s)	154, 341
BsiEI	CGRYCG	3 cut(s)	170, 211, 366
BsiHKAI	GWGCWC	2 cut(s)	315, 503
BsiHKCI	CYCGRG	3 cut(s)	243, 261, 308
BslFI	GGGAC	2 cut(s)	97, 341
BslI	CCNNNNNNNGG	6 cut(s)	121, 139, 193, 300, 620, 856
BsmAI	GTCTC	2 cut(s)	376, 436
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	97, 341
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	9 cut(s)	66, 204, 210, 242, 273, 654, 682, 752, 909
Bso31I	GGTCTC	1 cut(s)	436
BsoBI	CYCGRG	3 cut(s)	243, 261, 308
Bsp1286I	GDGCHC	2 cut(s)	315, 503
Bsp143I	GATC	3 cut(s)	42, 363, 868
BspANI	GGCC	9 cut(s)	66, 204, 210, 242, 273, 654, 682, 752, 909
BspCNI	CTCAG	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	3 cut(s)	142, 344, 520
BspTNI	GGTCTC	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	792
BsrDI	GCAATG	2 cut(s)	463, 707
BsrFI	RCCGGY	5 cut(s)	145, 154, 322, 341, 347
BsrI	ACTGG	1 cut(s)	813
BssAI	RCCGGY	5 cut(s)	145, 154, 322, 341, 347
BssECI	CCNNGG	2 cut(s)	205, 243
BssMI	GATC	3 cut(s)	42, 363, 868
BssNI	GRCGYC	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	90, 446
BstACI	GRCGYC	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	896
BstC8I	GCNNGC	5 cut(s)	228, 315, 324, 386, 750
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	861
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	3 cut(s)	45, 366, 871
BstMAI	GTCTC	2 cut(s)	376, 436
BstMBI	GATC	3 cut(s)	42, 363, 868
BstMCI	CGRYCG	3 cut(s)	170, 211, 366
BstSCI	CCNGG	4 cut(s)	132, 242, 243, 357
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	347
BstZI	CGGCCG	1 cut(s)	208
BsuRI	GGCC	9 cut(s)	66, 204, 210, 242, 273, 654, 682, 752, 909
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	861
Cac8I	GCNNGC	5 cut(s)	228, 315, 324, 386, 750
CfoI	GCGC	1 cut(s)	523
Cfr10I	RCCGGY	5 cut(s)	145, 154, 322, 341, 347
Cfr13I	GGNCC	5 cut(s)	111, 181, 202, 217, 241
Cfr42I	CCGCGG	1 cut(s)	208
Cfr9I	CCCGGG	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	345, 928
CspAI	ACCGGT	2 cut(s)	154, 341
CviAII	CATG	1 cut(s)	607
CviQI	GTAC	2 cut(s)	345, 928
DdeI	CTNAG	1 cut(s)	435
DinI	GGCGCC	1 cut(s)	522
DpnI	GATC	3 cut(s)	44, 365, 870
DpnII	GATC	3 cut(s)	42, 363, 868
EaeI	YGGCCR	4 cut(s)	64, 208, 271, 907
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	90, 446
EarI	CTCTTC	2 cut(s)	90, 446
Ecl136II	GAGCTC	1 cut(s)	501
EclXI	CGGCCG	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	3 cut(s)	111, 181, 217
Eco52I	CGGCCG	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	501
Eco88I	CYCGRG	3 cut(s)	243, 261, 308
EcoICRI	GAGCTC	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	503
EgeI	GGCGCC	1 cut(s)	522
EheI	GGCGCC	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	1 cut(s)	610
FaiI	YATR	3 cut(s)	575, 608, 686
FaqI	GGGAC	2 cut(s)	97, 341
FatI	CATG	1 cut(s)	606
FauI	CCCGC	2 cut(s)	235, 871
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	7 cut(s)	205, 208, 231, 240, 336, 547, 876
FokI	GGATG	1 cut(s)	868
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	7 cut(s)	205, 208, 231, 240, 336, 547, 876
FspBI	CTAG	1 cut(s)	801
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	7 cut(s)	205, 208, 231, 240, 336, 547, 876
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	9 cut(s)	66, 204, 210, 242, 273, 654, 682, 752, 909
HhaI	GCGC	1 cut(s)	523
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	1 cut(s)	610
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	3 cut(s)	22, 394, 641
HphI	GGTGA	3 cut(s)	172, 547, 746
Hpy166II	GTNNAC	2 cut(s)	174, 538
Hpy188I	TCNGA	6 cut(s)	221, 283, 399, 436, 444, 640
Hpy188III	TCNNGA	4 cut(s)	26, 46, 118, 391
Hpy8I	GTNNAC	2 cut(s)	174, 538
Hpy99I	CGWCG	5 cut(s)	41, 175, 178, 287, 403
HpyAV	CCTTC	4 cut(s)	172, 645, 672, 823
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	4 cut(s)	468, 673, 712, 748
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	895
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	1 cut(s)	610
HspAI	GCGC	1 cut(s)	521
KasI	GGCGCC	1 cut(s)	520
KflI	GGGWCCC	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	348
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	42, 363, 868
LmnI	GCTCC	4 cut(s)	309, 535, 789, 809
Lsp1109I	GCAGC	1 cut(s)	347
MaeI	CTAG	1 cut(s)	801
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	3 cut(s)	44, 365, 870
MbiI	CCGCTC	1 cut(s)	792
MboI	GATC	3 cut(s)	42, 363, 868
MboII	GAAGA	5 cut(s)	41, 100, 107, 463, 595
MhlI	GDGCHC	2 cut(s)	315, 503
MluCI	AATT	5 cut(s)	71, 494, 504, 581, 902
Mly113I	GGCGCC	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	306, 422
MnlI	CCTC	6 cut(s)	125, 193, 207, 317, 421, 484
MroNI	GCCGGC	1 cut(s)	322
MseI	TTAA	1 cut(s)	924
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	3 cut(s)	207, 256, 920
MspR9I	CCNGG	4 cut(s)	134, 244, 245, 359
Mva1269I	GAATGC	1 cut(s)	228
MvnI	CGCG	1 cut(s)	207
NaeI	GCCGGC	1 cut(s)	324
NarI	GGCGCC	1 cut(s)	521
NciI	CCSGG	4 cut(s)	134, 244, 245, 359
NdeII	GATC	3 cut(s)	42, 363, 868
NgoMIV	GCCGGC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	610
NmeAIII	GCCGAG	2 cut(s)	249, 343
NmuCI	GTSAC	1 cut(s)	700
OliI	CACNNNNGTG	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 372
PctI	GAATGC	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	394, 641
PflMI	CCANNNNNTGG	2 cut(s)	300, 620
PinAI	ACCGGT	2 cut(s)	154, 341
PkrI	GCNGC	7 cut(s)	206, 209, 232, 241, 337, 548, 877
Ple19I	CGATCG	1 cut(s)	366
PleI	GAGTC	1 cut(s)	30
PluTI	GGCGCC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	896
PpuMI	RGGWCCY	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	111
PspPI	GGNCC	5 cut(s)	111, 181, 202, 217, 241
PspPPI	RGGWCCY	1 cut(s)	111
PspXI	VCTCGAGB	1 cut(s)	308
PvuI	CGATCG	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	256
RgaI	GCGATCGC	1 cut(s)	366
RsaI	GTAC	2 cut(s)	346, 929
RsaNI	GTAC	2 cut(s)	345, 928
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	503
SacII	CCGCGG	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	924
SatI	GCNGC	7 cut(s)	205, 208, 231, 240, 336, 547, 876
Sau3AI	GATC	3 cut(s)	42, 363, 868
Sau96I	GGNCC	5 cut(s)	111, 181, 202, 217, 241
ScaI	AGTACT	1 cut(s)	929
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	4 cut(s)	134, 244, 245, 359
SduI	GDGCHC	2 cut(s)	315, 503
SetI	ASST	9 cut(s)	198, 258, 302, 432, 441, 462, 503, 532, 898
SfaAI	GCGATCGC	1 cut(s)	366
SfoI	GGCGCC	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	308
Sfr303I	CCGCGG	1 cut(s)	208
SgfI	GCGATCGC	1 cut(s)	366
SgrAI	CRCCGGYG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	208
SgrDI	CGTCGACG	1 cut(s)	172
SinI	GGWCC	3 cut(s)	111, 181, 217
SlaI	CTCGAG	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	308, 389
SmoI	CTYRAG	2 cut(s)	308, 389
SpeI	ACTAGT	1 cut(s)	800
Sse9I	AATT	5 cut(s)	71, 494, 504, 581, 902
SseBI	AGGCCT	1 cut(s)	682
SspDI	GGCGCC	1 cut(s)	520
SspMI	CTAG	1 cut(s)	801
SstI	GAGCTC	1 cut(s)	503
StuI	AGGCCT	1 cut(s)	682
StyD4I	CCNGG	4 cut(s)	132, 242, 243, 357
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	898
TasI	AATT	5 cut(s)	71, 494, 504, 581, 902
TatI	WGTACW	1 cut(s)	927
TauI	GCSGC	6 cut(s)	207, 210, 233, 242, 549, 878
TfiI	GAWTC	2 cut(s)	394, 641
Tru1I	TTAA	1 cut(s)	924
Tru9I	TTAA	1 cut(s)	924
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	1 cut(s)	595
TspGWI	ACGGA	2 cut(s)	364, 588
TspMI	CCCGGG	1 cut(s)	243
Van91I	CCANNNNNTGG	2 cut(s)	300, 620
VpaK11BI	GGWCC	3 cut(s)	111, 181, 217
XapI	RAATTY	1 cut(s)	902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	621
XhoI	CTCGAG	1 cut(s)	308
XmaI	CCCGGG	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	173
XspI	CTAG	1 cut(s)	801
ZrmI	AGTACT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.