Rh1DG400500
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009929
Physical Location & Seq
Forward (+)
62017291 .. 62019218
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG400500.1

Sequence Viewer

Length: 984 bp
ATGGAACCAAATCAAAGGCAGAGTCTTGAAGAAACCGACGGGATCACGAACCCATCAGTTTCCGGCCAACAATTTCCGGCGGTGGCGAAGAAAGAAGAGTTCGAAGAAGGGTCCCTCTCGATGGGTCTTATCCCGGTTCCGGCACCGGCGAAACCGGTGGCGAAGCGGTCGTCGACGAAGGACCGCCACACAAAGGTGGAGGGCCGCGGCCGGAGGGTCCGAATGCCCGCCGCCTGTGCGGCCCGGGTTTTCCAGCTGACCCGAGAACTCGGCCACAAGTCCGACGGCGAAACCATCAGGTGGCTCCTCGAGCACGCCGAGCCGGCGATAATCGCAGCCACCGGTACCGGCACAGTCCCGGCGATTGCCGTCTCCGTCGGCGGCACGCTCAAGATTCCGACGAGTTCTCTGGCGAACCCGAATGGAGAGGTCTCTGAGCTTCCGAGAAAGAAGAGAAAGCTACATTGTAATAGTGATTTTGTTGATGCGGAGGAATTGAGCTCAATTTCGAGTGGCTTGGCGCCGATAGCTCCGGTGAACTACGGCGGCGGTGGCGGTGGGTCTTTGTTGCCTATGTGGCAATTTGGGGCGAATGTTCCGTTCTTCATGTTCCCAAACTCTGGTTGGGCTATTCCTTCGGATTCAGTTTCAGGCCACACCATTTTCGATTTGCAAGGAAGGCCTATATCGAACTTCCCCGTCACAGCTTTGCAATCTGGGGTTCAAGTTTGTGGTGATGTTGACGTGCAGGCCACTTCTGGTTCGATTTCGAGTGGTGGTGGTGGTGGTGGGAGCGGTTCGACTAGTTTGGGAGCCAGTAATAGTAATGCGGTTACTAGTAGTGACACTAGTGCTACAACAGCTGCTCCGATTAGTCATAGTCAGTTGCTGAGGGACTTTTCTTTGGATACTTTGGACAAGAGGGAGCTTCAGTTCTTGGGTGGTCTGTGTGGAAATTCAGAAGCTCAATACTCAAAGCCTTGA

Protein Analysis

327

Amino Acids

33.97

Weight (kDa)

6.1

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 58 - 130 5.7e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 3 cut(s) 142, 344, 520
AccB7I CCANNNNNTGG 2 cut(s) 300, 620
AccBSI CCGCTC 1 cut(s) 795
AccI GTMKAC 1 cut(s) 173
AccII CGCG 1 cut(s) 207
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 3 cut(s) 64, 208, 271
AcsI RAATTY 1 cut(s) 955
AcuI CTGAAG 1 cut(s) 914
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
AgeI ACCGGT 2 cut(s) 154, 341
AgsI TTSAA 2 cut(s) 29, 725
AhlI ACTAGT 3 cut(s) 803, 836, 848
AjiI CACGTC 1 cut(s) 745
AleI CACNNNNGTG 1 cut(s) 194
AloI GAACNNNNNNTCC 2 cut(s) 917, 949
AluBI AGCT 9 cut(s) 256, 439, 460, 501, 530, 707, 863, 928, 965
AluI AGCT 9 cut(s) 256, 439, 460, 501, 530, 707, 863, 928, 965
Alw21I GWGCWC 2 cut(s) 315, 503
Alw26I GTCTC 2 cut(s) 376, 436
AlwI GGATC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 889
Ama87I CYCGRG 3 cut(s) 243, 261, 308
AoxI GGCC 8 cut(s) 64, 202, 208, 240, 271, 652, 680, 750
ApeKI GCWGC 2 cut(s) 335, 863
ApoI RAATTY 1 cut(s) 955
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 155, 187
AsiGI ACCGGT 2 cut(s) 154, 341
Asp718I GGTACC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 5 cut(s) 111, 181, 202, 217, 241
AsuC2I CCSGG 4 cut(s) 134, 244, 245, 359
AsuHPI GGTGA 2 cut(s) 547, 746
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 3 cut(s) 243, 261, 308
AvaII GGWCC 3 cut(s) 111, 181, 217
BanI GGYRCC 3 cut(s) 142, 344, 520
BanII GRGCYC 1 cut(s) 503
Bbv12I GWGCWC 2 cut(s) 315, 503
BbvCI CCTCAGC 1 cut(s) 890
BbvI GCAGC 2 cut(s) 347, 850
BccI CCATC 3 cut(s) 61, 115, 302
BceAI ACGGC 3 cut(s) 301, 353, 559
BciVI GTATCC 1 cut(s) 901
BcnI CCSGG 4 cut(s) 134, 244, 245, 359
BcoDI GTCTC 2 cut(s) 376, 436
BcuI ACTAGT 3 cut(s) 803, 836, 848
BfaI CTAG 3 cut(s) 804, 837, 849
BfoI RGCGCY 1 cut(s) 524
BfuI GTATCC 1 cut(s) 901
BglI GCCNNNNNGGC 3 cut(s) 239, 323, 577
BisI GCNGC 8 cut(s) 205, 208, 231, 240, 336, 382, 547, 864
BlsI GCNGC 8 cut(s) 206, 209, 232, 241, 337, 383, 548, 865
Bme1390I CCNGG 4 cut(s) 134, 244, 245, 359
Bme18I GGWCC 3 cut(s) 111, 181, 217
BmeT110I CYCGRG 3 cut(s) 243, 261, 308
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 5 cut(s) 111, 181, 202, 217, 241
BmrFI CCNGG 4 cut(s) 134, 244, 245, 359
BmsI GCATC 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 890
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 4 cut(s) 134, 244, 245, 359
BsaHI GRCGYC 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 205, 243
BsaWI WCCGGW 3 cut(s) 154, 341, 532
BsaXI ACNNNNNCTCC 4 cut(s) 850, 880, 917, 947
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
Bse118I RCCGGY 5 cut(s) 145, 154, 322, 341, 347
Bse1I ACTGG 1 cut(s) 816
BseDI CCNNGG 2 cut(s) 205, 243
BseLI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
BseMII CTCAG 2 cut(s) 426, 881
BseNI ACTGG 1 cut(s) 816
BseRI GAGGAG 1 cut(s) 296
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 347, 850
BsgI GTGCAG 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 2 cut(s) 170, 211
BshFI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BshNI GGYRCC 3 cut(s) 142, 344, 520
BshTI ACCGGT 2 cut(s) 154, 341
BsiEI CGRYCG 2 cut(s) 170, 211
BsiHKAI GWGCWC 2 cut(s) 315, 503
BsiHKCI CYCGRG 3 cut(s) 243, 261, 308
BslFI GGGAC 3 cut(s) 97, 341, 908
BslI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
BsmAI GTCTC 2 cut(s) 376, 436
BsmBI CGTCTC 1 cut(s) 376
BsmFI GGGAC 3 cut(s) 97, 341, 908
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
Bso31I GGTCTC 1 cut(s) 436
BsoBI CYCGRG 3 cut(s) 243, 261, 308
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 315, 503
Bsp143I GATC 1 cut(s) 42
BspANI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BspCNI CTCAG 2 cut(s) 427, 882
BspFNI CGCG 1 cut(s) 207
BspPI GGATC 1 cut(s) 50
BspT104I TTCGAA 1 cut(s) 102
BspT107I GGYRCC 3 cut(s) 142, 344, 520
BspTNI GGTCTC 1 cut(s) 436
BsrBI CCGCTC 1 cut(s) 795
BsrFI RCCGGY 5 cut(s) 145, 154, 322, 341, 347
BsrI ACTGG 1 cut(s) 816
BssAI RCCGGY 5 cut(s) 145, 154, 322, 341, 347
BssECI CCNNGG 2 cut(s) 205, 243
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 521
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 2 cut(s) 90, 446
BstACI GRCGYC 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 102
BstC8I GCNNGC 5 cut(s) 228, 315, 324, 386, 750
BstDEI CTNAG 2 cut(s) 435, 890
BstDSI CCRYGG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 524
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 2 cut(s) 376, 436
BstMBI GATC 1 cut(s) 42
BstMCI CGRYCG 2 cut(s) 170, 211
BstSCI CCNGG 4 cut(s) 132, 242, 243, 357
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 347, 850
BstZI CGGCCG 1 cut(s) 208
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BtgI CCRYGG 1 cut(s) 205
BtrI CACGTC 1 cut(s) 745
Cac8I GCNNGC 5 cut(s) 228, 315, 324, 386, 750
CaiI CAGNNNCTG 1 cut(s) 889
CfoI GCGC 1 cut(s) 523
Cfr10I RCCGGY 5 cut(s) 145, 154, 322, 341, 347
Cfr13I GGNCC 5 cut(s) 111, 181, 202, 217, 241
Cfr42I CCGCGG 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 243
Csp6I GTAC 1 cut(s) 345
CspAI ACCGGT 2 cut(s) 154, 341
CviAII CATG 1 cut(s) 607
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 435, 890
DinI GGCGCC 1 cut(s) 522
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EaeI YGGCCR 3 cut(s) 64, 208, 271
EagI CGGCCG 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 90, 446
EarI CTCTTC 2 cut(s) 90, 446
Ecl136II GAGCTC 1 cut(s) 501
EclXI CGGCCG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 682
Eco24I GRGCYC 1 cut(s) 503
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 3 cut(s) 111, 181, 217
Eco52I CGGCCG 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 914
Eco88I CYCGRG 3 cut(s) 243, 261, 308
EcoICRI GAGCTC 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 503
EgeI GGCGCC 1 cut(s) 522
EheI GGCGCC 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 376
FaeI CATG 1 cut(s) 610
FaiI YATR 4 cut(s) 575, 608, 686, 879
FaqI GGGAC 3 cut(s) 97, 341, 908
FatI CATG 1 cut(s) 606
FauI CCCGC 1 cut(s) 235
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 8 cut(s) 205, 208, 231, 240, 336, 382, 547, 864
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 8 cut(s) 205, 208, 231, 240, 336, 382, 547, 864
FspBI CTAG 3 cut(s) 804, 837, 849
GlaI GCGC 1 cut(s) 522
GluI GCNGC 8 cut(s) 205, 208, 231, 240, 336, 382, 547, 864
HaeII RGCGCY 1 cut(s) 524
HaeIII GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
HhaI GCGC 1 cut(s) 523
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 1 cut(s) 610
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HincII GTYRAC 2 cut(s) 174, 742
HindII GTYRAC 2 cut(s) 174, 742
HinfI GANTC 3 cut(s) 22, 394, 641
HphI GGTGA 2 cut(s) 547, 746
Hpy166II GTNNAC 3 cut(s) 174, 538, 742
Hpy188I TCNGA 8 cut(s) 221, 283, 399, 436, 444, 640, 870, 961
Hpy188III TCNNGA 4 cut(s) 26, 46, 118, 391
Hpy8I GTNNAC 3 cut(s) 174, 538, 742
Hpy99I CGWCG 6 cut(s) 41, 175, 178, 287, 380, 403
HpyAV CCTTC 4 cut(s) 101, 172, 645, 672
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 3 cut(s) 673, 712, 748
HpyF3I CTNAG 2 cut(s) 435, 890
HpySE526I ACGT 1 cut(s) 744
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 1 cut(s) 610
HspAI GCGC 1 cut(s) 521
KasI GGCGCC 1 cut(s) 520
KflI GGGWCCC 1 cut(s) 111
KpnI GGTACC 1 cut(s) 348
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 6 cut(s) 309, 535, 792, 812, 871, 925
Lsp1109I GCAGC 2 cut(s) 347, 850
LweI GCATC 1 cut(s) 475
MaeI CTAG 3 cut(s) 804, 837, 849
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 3 cut(s) 700, 832, 842
MalI GATC 1 cut(s) 44
MbiI CCGCTC 1 cut(s) 795
MboI GATC 1 cut(s) 42
MboII GAAGA 6 cut(s) 41, 100, 107, 116, 463, 595
MhlI GDGCHC 2 cut(s) 315, 503
MluCI AATT 5 cut(s) 71, 494, 504, 581, 955
Mly113I GGCGCC 1 cut(s) 521
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 306, 422
MnlI CCTC 8 cut(s) 125, 193, 207, 317, 421, 484, 885, 915
MroNI GCCGGC 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 3 cut(s) 207, 256, 863
MspR9I CCNGG 4 cut(s) 134, 244, 245, 359
Mva1269I GAATGC 1 cut(s) 228
MvnI CGCG 1 cut(s) 207
NaeI GCCGGC 1 cut(s) 324
NarI GGCGCC 1 cut(s) 521
NciI CCSGG 4 cut(s) 134, 244, 245, 359
NdeII GATC 1 cut(s) 42
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 610
NmeAIII GCCGAG 2 cut(s) 249, 343
NmuCI GTSAC 2 cut(s) 700, 842
NspV TTCGAA 1 cut(s) 102
OliI CACNNNNGTG 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 308
PceI AGGCCT 1 cut(s) 682
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 228
PdiI GCCGGC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 394, 641
PflMI CCANNNNNTGG 2 cut(s) 300, 620
PinAI ACCGGT 2 cut(s) 154, 341
PkrI GCNGC 8 cut(s) 206, 209, 232, 241, 337, 383, 548, 865
PleI GAGTC 1 cut(s) 30
PluTI GGCGCC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 503
Psp5II RGGWCCY 1 cut(s) 111
PspPI GGNCC 5 cut(s) 111, 181, 202, 217, 241
PspPPI RGGWCCY 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 889
PvuII CAGCTG 2 cut(s) 256, 863
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 503
SacII CCGCGG 1 cut(s) 208
SalI GTCGAC 1 cut(s) 172
SatI GCNGC 8 cut(s) 205, 208, 231, 240, 336, 382, 547, 864
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 5 cut(s) 111, 181, 202, 217, 241
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 4 cut(s) 134, 244, 245, 359
SduI GDGCHC 2 cut(s) 315, 503
SfaNI GCATC 1 cut(s) 475
SfoI GGCGCC 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 308
Sfr303I CCGCGG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 102
SgrAI CRCCGGYG 1 cut(s) 145
SgrBI CCGCGG 1 cut(s) 208
SgrDI CGTCGACG 1 cut(s) 172
SinI GGWCC 3 cut(s) 111, 181, 217
SlaI CTCGAG 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 308, 389
SmoI CTYRAG 2 cut(s) 308, 389
SpeI ACTAGT 3 cut(s) 803, 836, 848
Sse9I AATT 5 cut(s) 71, 494, 504, 581, 955
SseBI AGGCCT 1 cut(s) 682
SspDI GGCGCC 1 cut(s) 520
SspMI CTAG 3 cut(s) 804, 837, 849
SstI GAGCTC 1 cut(s) 503
StuI AGGCCT 1 cut(s) 682
StyD4I CCNGG 4 cut(s) 132, 242, 243, 357
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 747
TasI AATT 5 cut(s) 71, 494, 504, 581, 955
TauI GCSGC 6 cut(s) 207, 210, 233, 242, 384, 549
TfiI GAWTC 2 cut(s) 394, 641
TseFI GTSAC 2 cut(s) 700, 842
TseI GCWGC 2 cut(s) 335, 863
Tsp45I GTSAC 2 cut(s) 700, 842
TspDTI ATGAA 1 cut(s) 595
TspGWI ACGGA 2 cut(s) 364, 588
TspMI CCCGGG 1 cut(s) 243
Van91I CCANNNNNTGG 2 cut(s) 300, 620
VpaK11BI GGWCC 3 cut(s) 111, 181, 217
XapI RAATTY 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XhoI CTCGAG 1 cut(s) 308
XmaI CCCGGG 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 3 cut(s) 804, 837, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.