FvH4_7g28770
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009929
Physical Location & Seq
Forward (+)
21284144 .. 21285816
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28770.t1

Sequence Viewer

Length: 984 bp
ATGGAAGAAAATCAAAGGCAGAGTCTTGAACCCATGAACCCTACATTTTCCGGTCACCAATTTCCGGCGGCGGCGAAGAAAGAAGAGTTCGAAGAAGGGTCTCTGTCGATGGGTCTGATTCCGGTTCCGGCGTCGGCGAAACCGGTGGTGAAGCAGCGGTCGTCGACGAAGGACCGCCACACGAAGGTGGAGGGCCGCGGCCGGAGGGTTCGAATGCCGGCGGCCTGTGCGGCCCGGGTTTTCCAGCTGACCCGAGAATTGGGTCACAAGACCGACGGAGAAACCATCCGGTGGCTTCTCGAGCACGCCGAGCCGGCGATAATTGCAGCCACTGGTACCGGAACAGTCCCCGCTATCGCAGTCTCCGTCGGCGGCGCGCTGAAGATTCCGACGAGTTCGCTGGCGAATCCGAATGGAGAGGTCTCTGAGCTTCCCAGGAAGAAGAGGAGGCTACATTGCAATAGTGAATTTGTTGATGTGGAGGATTTGAGCTCGATTTCGAGTGGGTTGGCGCCGATGGCGACGGTTAATTACGGCGGCATTGGTGGTGGTGGTGGTGGGGGTTTGGTGCCTATGTGGCAATTCGGGGCCAATGTGCCGGCTGTGCCGTTTTTAATGTTCCCAAACTCTGGTTGGGCTATTCCTTCGGATTCAGTTTCGGGGCAGACGATGTTCAATCTGCAAGGGAGGCCAATGTCGAACTTCCCTGTCACAGCATTGCAATCTGGGGTTGAAGTTCATAGTTGTGGCGATGTGCAGGCCACTTCTGGTTCGATTTTGAGTGGTGGTGGGAGCTGTTCGACTAGTTTGGGAGTTAGTAATAGTAATGCGGTTACTAGTAGTGACACTAGTGCTACTACAGCTGCTCCGATGAGTCATACTCAGTTGCTAAGGGACTTGTCTTTGGATACTTTGGATAAGAGGGAGCTTCAGTTCTTGGGTGATCTGTGTGGAAATTCACAAGCTCAATACTCAAGGCCTTGA

Protein Analysis

328

Amino Acids

34.34

Weight (kDa)

6.66

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 55 - 122 8.8e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 3 cut(s) 335, 511, 568
AccB7I CCANNNNNTGG 2 cut(s) 291, 629
AccI GTMKAC 1 cut(s) 164
AccII CGCG 2 cut(s) 198, 377
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 467, 955
AcuI CTGAAG 2 cut(s) 401, 914
AcyI GRCGYC 2 cut(s) 131, 512
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 5 cut(s) 64, 184, 259, 291, 629
AgeI ACCGGT 1 cut(s) 142
AgsI TTSAA 3 cut(s) 29, 676, 734
AhlI ACTAGT 3 cut(s) 803, 836, 848
AjnI CCWGG 1 cut(s) 434
AleI CACNNNNGTG 1 cut(s) 185
AloI GAACNNNNNNTCC 2 cut(s) 917, 949
AluBI AGCT 7 cut(s) 247, 430, 492, 795, 863, 928, 965
AluI AGCT 7 cut(s) 247, 430, 492, 795, 863, 928, 965
Alw21I GWGCWC 2 cut(s) 306, 494
Alw26I GTCTC 3 cut(s) 105, 367, 427
AlwNI CAGNNNCTG 1 cut(s) 332
Ama87I CYCGRG 3 cut(s) 234, 252, 299
AoxI GGCC 8 cut(s) 193, 199, 222, 231, 588, 689, 759, 977
ApeKI GCWGC 3 cut(s) 154, 326, 863
ApoI RAATTY 2 cut(s) 467, 955
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AsiGI ACCGGT 1 cut(s) 142
Asp718I GGTACC 1 cut(s) 335
AspLEI GCGC 3 cut(s) 377, 379, 514
AspS9I GGNCC 4 cut(s) 172, 193, 232, 588
AsuC2I CCSGG 2 cut(s) 235, 236
AsuHPI GGTGA 3 cut(s) 47, 160, 953
AsuII TTCGAA 2 cut(s) 90, 211
AvaI CYCGRG 3 cut(s) 234, 252, 299
AvaII GGWCC 1 cut(s) 172
BanI GGYRCC 3 cut(s) 335, 511, 568
BanII GRGCYC 1 cut(s) 494
Bbv12I GWGCWC 2 cut(s) 306, 494
BbvI GCAGC 3 cut(s) 166, 338, 850
BccI CCATC 3 cut(s) 103, 293, 511
BceAI ACGGC 2 cut(s) 550, 592
BciT130I CCWGG 1 cut(s) 436
BciVI GTATCC 1 cut(s) 901
BcnI CCSGG 2 cut(s) 235, 236
BcoDI GTCTC 3 cut(s) 105, 367, 427
BcuI ACTAGT 3 cut(s) 803, 836, 848
BfaI CTAG 3 cut(s) 804, 837, 849
BfmI CTRYAG 1 cut(s) 858
BfoI RGCGCY 1 cut(s) 515
BfuI GTATCC 1 cut(s) 901
BglI GCCNNNNNGGC 3 cut(s) 230, 314, 577
Bme1390I CCNGG 3 cut(s) 235, 236, 436
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 3 cut(s) 234, 252, 299
BmgT120I GGNCC 4 cut(s) 172, 193, 232, 588
BmiI GGNNCC 5 cut(s) 126, 337, 513, 570, 589
BmrFI CCNGG 3 cut(s) 235, 236, 436
BplI GAGNNNNNCTC 2 cut(s) 865, 897
Bpu10I CCTNAGC 1 cut(s) 890
Bpu14I TTCGAA 2 cut(s) 90, 211
BpuEI CTTGAG 1 cut(s) 958
BpuMI CCSGG 2 cut(s) 235, 236
BsaHI GRCGYC 2 cut(s) 131, 512
BsaI GGTCTC 2 cut(s) 105, 427
BsaJI CCNNGG 3 cut(s) 196, 234, 434
BsaWI WCCGGW 5 cut(s) 50, 121, 142, 288, 338
BsaXI ACNNNNNCTCC 4 cut(s) 850, 880, 917, 947
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 184, 259, 291, 629
Bse118I RCCGGY 4 cut(s) 142, 217, 313, 598
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 2 cut(s) 454, 716
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 3 cut(s) 196, 234, 434
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 5 cut(s) 64, 184, 259, 291, 629
BseMI GCAATG 2 cut(s) 454, 716
BseMII CTCAG 2 cut(s) 417, 896
BseNI ACTGG 1 cut(s) 337
BsePI GCGCGC 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 460
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 3 cut(s) 166, 338, 850
BsgI GTGCAG 1 cut(s) 776
Bsh1236I CGCG 2 cut(s) 198, 377
Bsh1285I CGRYCG 2 cut(s) 161, 202
BshFI GGCC 8 cut(s) 195, 201, 224, 233, 590, 691, 761, 979
BshNI GGYRCC 3 cut(s) 335, 511, 568
BshTI ACCGGT 1 cut(s) 142
BsiEI CGRYCG 2 cut(s) 161, 202
BsiHKAI GWGCWC 2 cut(s) 306, 494
BsiHKCI CYCGRG 3 cut(s) 234, 252, 299
BslFI GGGAC 2 cut(s) 332, 908
BslI CCNNNNNNNGG 5 cut(s) 64, 184, 259, 291, 629
BsmAI GTCTC 3 cut(s) 105, 367, 427
BsmFI GGGAC 2 cut(s) 332, 908
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 8 cut(s) 195, 201, 224, 233, 590, 691, 761, 979
Bso31I GGTCTC 2 cut(s) 105, 427
BsoBI CYCGRG 3 cut(s) 234, 252, 299
Bsp119I TTCGAA 2 cut(s) 90, 211
Bsp1286I GDGCHC 2 cut(s) 306, 494
Bsp143I GATC 1 cut(s) 943
BspANI GGCC 8 cut(s) 195, 201, 224, 233, 590, 691, 761, 979
BspCNI CTCAG 2 cut(s) 418, 895
BspFNI CGCG 2 cut(s) 198, 377
BspLI GGNNCC 5 cut(s) 126, 337, 513, 570, 589
BspT104I TTCGAA 2 cut(s) 90, 211
BspT107I GGYRCC 3 cut(s) 335, 511, 568
BspTNI GGTCTC 2 cut(s) 105, 427
BsrDI GCAATG 2 cut(s) 454, 716
BsrFI RCCGGY 4 cut(s) 142, 217, 313, 598
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 4 cut(s) 142, 217, 313, 598
BssECI CCNNGG 3 cut(s) 196, 234, 434
BssHII GCGCGC 1 cut(s) 375
BssMI GATC 1 cut(s) 943
BssNI GRCGYC 2 cut(s) 131, 512
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 2 cut(s) 346, 526
Bst6I CTCTTC 2 cut(s) 78, 437
BstACI GRCGYC 2 cut(s) 131, 512
BstBI TTCGAA 2 cut(s) 90, 211
BstC8I GCNNGC 7 cut(s) 219, 306, 315, 377, 402, 600, 759
BstDEI CTNAG 3 cut(s) 426, 882, 890
BstDSI CCRYGG 1 cut(s) 196
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 2 cut(s) 198, 377
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 3 cut(s) 377, 379, 514
BstKTI GATC 1 cut(s) 946
BstMAI GTCTC 3 cut(s) 105, 367, 427
BstMBI GATC 1 cut(s) 943
BstMCI CGRYCG 2 cut(s) 161, 202
BstNI CCWGG 1 cut(s) 436
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 3 cut(s) 233, 234, 434
BstSFI CTRYAG 1 cut(s) 858
BstUI CGCG 2 cut(s) 198, 377
BstV1I GCAGC 3 cut(s) 166, 338, 850
BstZI CGGCCG 1 cut(s) 199
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 8 cut(s) 195, 201, 224, 233, 590, 691, 761, 979
BtgI CCRYGG 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 7 cut(s) 219, 306, 315, 377, 402, 600, 759
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 3 cut(s) 377, 379, 514
Cfr10I RCCGGY 4 cut(s) 142, 217, 313, 598
Cfr13I GGNCC 4 cut(s) 172, 193, 232, 588
Cfr42I CCGCGG 1 cut(s) 199
Cfr9I CCCGGG 1 cut(s) 234
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 336
CspAI ACCGGT 1 cut(s) 142
CviAII CATG 1 cut(s) 34
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 3 cut(s) 426, 882, 890
DinI GGCGCC 1 cut(s) 513
DpnI GATC 1 cut(s) 945
DpnII GATC 1 cut(s) 943
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 78, 437
EarI CTCTTC 2 cut(s) 78, 437
Ecl136II GAGCTC 1 cut(s) 492
EclXI CGGCCG 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 979
Eco24I GRGCYC 1 cut(s) 494
Eco31I GGTCTC 2 cut(s) 105, 427
Eco47I GGWCC 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 492
Eco57I CTGAAG 2 cut(s) 401, 914
Eco88I CYCGRG 3 cut(s) 234, 252, 299
Eco91I GGTNACC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 492
EcoO65I GGTNACC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 494
EgeI GGCGCC 1 cut(s) 513
EheI GGCGCC 1 cut(s) 513
FaeI CATG 1 cut(s) 37
FaiI YATR 4 cut(s) 35, 575, 741, 879
FaqI GGGAC 2 cut(s) 332, 908
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 358
FblI GTMKAC 1 cut(s) 164
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 494
FspBI CTAG 3 cut(s) 804, 837, 849
GlaI GCGC 3 cut(s) 376, 378, 513
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 8 cut(s) 195, 201, 224, 233, 590, 691, 761, 979
HgaI GACGC 1 cut(s) 120
HhaI GCGC 3 cut(s) 377, 379, 514
Hin1I GRCGYC 2 cut(s) 131, 512
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 3 cut(s) 375, 377, 512
HinP1I GCGC 3 cut(s) 375, 377, 512
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 6 cut(s) 22, 118, 385, 406, 650, 874
HphI GGTGA 3 cut(s) 47, 160, 953
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 6 cut(s) 117, 390, 411, 427, 649, 870
Hpy188III TCNNGA 2 cut(s) 26, 299
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 7 cut(s) 136, 166, 169, 278, 371, 394, 526
HpyAV CCTTC 4 cut(s) 89, 163, 178, 654
HpyCH4III ACNGT 2 cut(s) 346, 526
HpyCH4V TGCA 5 cut(s) 326, 459, 682, 721, 757
HpyF3I CTNAG 3 cut(s) 426, 882, 890
Hsp92I GRCGYC 2 cut(s) 131, 512
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 3 cut(s) 375, 377, 512
KasI GGCGCC 1 cut(s) 511
KpnI GGTACC 1 cut(s) 339
KroI GCCGGC 3 cut(s) 217, 313, 598
KroNI GCCGGC 3 cut(s) 219, 315, 600
KspI CCGCGG 1 cut(s) 199
Kzo9I GATC 1 cut(s) 943
LmnI GCTCC 3 cut(s) 792, 871, 925
Lsp1109I GCAGC 3 cut(s) 166, 338, 850
MaeI CTAG 3 cut(s) 804, 837, 849
MaeIII GTNAC 5 cut(s) 53, 263, 709, 832, 842
MalI GATC 1 cut(s) 945
MboI GATC 1 cut(s) 943
MboII GAAGA 7 cut(s) 17, 88, 95, 104, 394, 451, 454
MhlI GDGCHC 2 cut(s) 306, 494
MluCI AATT 7 cut(s) 59, 257, 321, 467, 529, 581, 955
Mly113I GGCGCC 1 cut(s) 512
MlyI GAGTC 2 cut(s) 31, 883
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 8 cut(s) 184, 198, 412, 438, 441, 475, 681, 915
MroNI GCCGGC 3 cut(s) 217, 313, 598
MseI TTAA 2 cut(s) 528, 614
MslI CAYNNNNRTG 2 cut(s) 185, 744
MspA1I CMGCKG 4 cut(s) 157, 198, 247, 863
MspR9I CCNGG 3 cut(s) 235, 236, 436
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 436
MvnI CGCG 2 cut(s) 198, 377
NaeI GCCGGC 3 cut(s) 219, 315, 600
NarI GGCGCC 1 cut(s) 512
NciI CCSGG 2 cut(s) 235, 236
NdeII GATC 1 cut(s) 943
NgoMIV GCCGGC 3 cut(s) 217, 313, 598
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 5 cut(s) 126, 337, 513, 570, 589
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 4 cut(s) 53, 263, 709, 842
NspV TTCGAA 2 cut(s) 90, 211
OliI CACNNNNGTG 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 299
PauI GCGCGC 1 cut(s) 375
PceI AGGCCT 1 cut(s) 979
PcsI WCGNNNNNNNCGW 3 cut(s) 306, 363, 665
PctI GAATGC 1 cut(s) 219
PdiI GCCGGC 3 cut(s) 219, 315, 600
PfeI GAWTC 4 cut(s) 118, 385, 406, 650
PflMI CCANNNNNTGG 2 cut(s) 291, 629
PinAI ACCGGT 1 cut(s) 142
PleI GAGTC 2 cut(s) 30, 882
PluTI GGCGCC 1 cut(s) 515
PpsI GAGTC 2 cut(s) 30, 882
Psp124BI GAGCTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 434
PspEI GGTNACC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 5 cut(s) 126, 337, 513, 570, 589
PspPI GGNCC 4 cut(s) 172, 193, 232, 588
PstNI CAGNNNCTG 1 cut(s) 332
PteI GCGCGC 1 cut(s) 375
PvuII CAGCTG 2 cut(s) 247, 863
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
RseI CAYNNNNRTG 2 cut(s) 185, 744
SacI GAGCTC 1 cut(s) 494
SacII CCGCGG 1 cut(s) 199
SalI GTCGAC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 528, 614
Sau3AI GATC 1 cut(s) 943
Sau96I GGNCC 4 cut(s) 172, 193, 232, 588
SchI GAGTC 2 cut(s) 31, 883
ScrFI CCNGG 3 cut(s) 235, 236, 436
SduI GDGCHC 2 cut(s) 306, 494
SetI ASST 9 cut(s) 189, 249, 423, 432, 494, 797, 865, 930, 967
SfcI CTRYAG 1 cut(s) 858
SfiI GGCCNNNNNGGCC 1 cut(s) 230
SfoI GGCGCC 1 cut(s) 513
Sfr274I CTCGAG 1 cut(s) 299
Sfr303I CCGCGG 1 cut(s) 199
SfuI TTCGAA 2 cut(s) 90, 211
SgrBI CCGCGG 1 cut(s) 199
SgrDI CGTCGACG 1 cut(s) 163
SinI GGWCC 1 cut(s) 172
SlaI CTCGAG 1 cut(s) 299
SmaI CCCGGG 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 185, 744
SmlI CTYRAG 2 cut(s) 299, 973
SmoI CTYRAG 2 cut(s) 299, 973
SpeI ACTAGT 3 cut(s) 803, 836, 848
Sse9I AATT 7 cut(s) 59, 257, 321, 467, 529, 581, 955
SseBI AGGCCT 1 cut(s) 979
SspDI GGCGCC 1 cut(s) 511
SspMI CTAG 3 cut(s) 804, 837, 849
SstI GAGCTC 1 cut(s) 494
StuI AGGCCT 1 cut(s) 979
StyD4I CCNGG 3 cut(s) 233, 234, 434
TaaI ACNGT 2 cut(s) 346, 526
TaqII GACCGA 1 cut(s) 287
TasI AATT 7 cut(s) 59, 257, 321, 467, 529, 581, 955
TauI GCSGC 8 cut(s) 71, 74, 198, 201, 224, 233, 375, 540
TfiI GAWTC 4 cut(s) 118, 385, 406, 650
Tru1I TTAA 2 cut(s) 528, 614
Tru9I TTAA 2 cut(s) 528, 614
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 4 cut(s) 53, 263, 709, 842
TseI GCWGC 3 cut(s) 154, 326, 863
Tsp45I GTSAC 4 cut(s) 53, 263, 709, 842
TspDTI ATGAA 2 cut(s) 50, 728
TspGWI ACGGA 2 cut(s) 291, 355
TspMI CCCGGG 1 cut(s) 234
TspRI CASTG 1 cut(s) 337
Van91I CCANNNNNTGG 2 cut(s) 291, 629
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 2 cut(s) 467, 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 630
XhoI CTCGAG 1 cut(s) 299
XmaI CCCGGG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 3 cut(s) 804, 837, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.