Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276131.1

Orthogroup ID

OG0009929

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 500

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276131.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 499 bp

atggaaccaaatcaaaggcagagtcttgaagaaaccgacgggatcacgaacccatcagtttccggccaacaatttccggcggtggcgaagaaagaagagttcgaagatgggtccctctcgatgggtcttatcccggttccggcaccggcgaaaccggtggtgaagcggtcgtcgacgaaggaccgccacacaaaggtggagggccgcggccggagggtccgaatgcccgccgcctgtgcggcccgggttttccagctgacccgagaactcggccacaagtccgacggcgaaaccatcaggtggctcctcgagcacgccgagccggcgataatcgcagccaccggtaccggcacagtcccggcgatcgccgtctccgtctgtggcacgctcaagattccgacgagttctctggcgaacccgaatggagaggtctctgagcttccgagaaagaagagaaagctacattgcaatagtgattttgttgatgtggaggaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

166

Amino Acids

17.96

Weight (kDa)

8.49

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51910 AT5G51910
fragaria_vesca	FvH4_7g28770
malus_domestica	MD00G1004900.v1.1 MD01G1194100.v1.1
prunus_persica	Prupe.2G288000_v2.0.a1
pyrus_communis	pycom01g20440 pycom07g23990
rosa_chinensis	RchiOBHm_Chr1g0376331
rosa_laevigata	RLG00000026611
rosa_multiflora	Rmu_co8276131.1_g000001 Rmu_sc0005594.1_g000020 Rmu_sc0016074.1_g000003 Rmu_ssc0000116.1_g000063 Rmu_ssc0000116.1_g000064
rosa_roxburghii	Rroxscaffold_4G00282200
rosa_samantha	Rh1AG406700 Rh1BG370700 Rh1CG383500 Rh1DG400500
rosa_wichuraiana	Rw1G036100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	2 cut(s)	142, 344
AccB7I	CCANNNNNTGG	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	1 cut(s)	207
AciI	CCGC	8 cut(s)	80, 166, 184, 205, 207, 228, 231, 239
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	3 cut(s)	64, 208, 271
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	4 cut(s)	121, 139, 193, 300
AgeI	ACCGGT	2 cut(s)	154, 341
AgsI	TTSAA	1 cut(s)	29
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	3 cut(s)	256, 439, 460
AluI	AGCT	3 cut(s)	256, 439, 460
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	376, 436
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	3 cut(s)	243, 261, 308
AoxI	GGCC	5 cut(s)	64, 202, 208, 240, 271
ApeKI	GCWGC	1 cut(s)	335
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AsiGI	ACCGGT	2 cut(s)	154, 341
AsiSI	GCGATCGC	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	344
AspS9I	GGNCC	5 cut(s)	111, 181, 202, 217, 241
AsuC2I	CCSGG	4 cut(s)	134, 244, 245, 359
AsuHPI	GGTGA	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	102
AvaI	CYCGRG	3 cut(s)	243, 261, 308
AvaII	GGWCC	3 cut(s)	111, 181, 217
BanI	GGYRCC	2 cut(s)	142, 344
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	4 cut(s)	61, 101, 115, 302
BceAI	ACGGC	2 cut(s)	301, 353
BcnI	CCSGG	4 cut(s)	134, 244, 245, 359
BcoDI	GTCTC	2 cut(s)	376, 436
BglI	GCCNNNNNGGC	2 cut(s)	239, 323
BisI	GCNGC	5 cut(s)	205, 208, 231, 240, 336
BlsI	GCNGC	5 cut(s)	206, 209, 232, 241, 337
Bme1390I	CCNGG	4 cut(s)	134, 244, 245, 359
Bme18I	GGWCC	3 cut(s)	111, 181, 217
BmeT110I	CYCGRG	3 cut(s)	243, 261, 308
BmgT120I	GGNCC	5 cut(s)	111, 181, 202, 217, 241
BmiI	GGNNCC	8 cut(s)	6, 112, 113, 138, 144, 218, 305, 346
BmrFI	CCNGG	4 cut(s)	134, 244, 245, 359
Bpu14I	TTCGAA	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	4 cut(s)	134, 244, 245, 359
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	205, 243
BsaWI	WCCGGW	2 cut(s)	154, 341
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 139, 193, 300
Bse118I	RCCGGY	5 cut(s)	145, 154, 322, 341, 347
Bse3DI	GCAATG	1 cut(s)	463
BseDI	CCNNGG	2 cut(s)	205, 243
BseLI	CCNNNNNNNGG	4 cut(s)	121, 139, 193, 300
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	296
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	3 cut(s)	170, 211, 366
BshFI	GGCC	5 cut(s)	66, 204, 210, 242, 273
BshNI	GGYRCC	2 cut(s)	142, 344
BshTI	ACCGGT	2 cut(s)	154, 341
BsiEI	CGRYCG	3 cut(s)	170, 211, 366
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	3 cut(s)	243, 261, 308
BslFI	GGGAC	2 cut(s)	97, 341
BslI	CCNNNNNNNGG	4 cut(s)	121, 139, 193, 300
BsmAI	GTCTC	2 cut(s)	376, 436
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	97, 341
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	5 cut(s)	66, 204, 210, 242, 273
Bso31I	GGTCTC	1 cut(s)	436
BsoBI	CYCGRG	3 cut(s)	243, 261, 308
Bsp119I	TTCGAA	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	42, 363
BspACI	CCGC	8 cut(s)	80, 166, 184, 205, 207, 228, 231, 239
BspANI	GGCC	5 cut(s)	66, 204, 210, 242, 273
BspCNI	CTCAG	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	8 cut(s)	6, 112, 113, 138, 144, 218, 305, 346
BspPI	GGATC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	102
BspT107I	GGYRCC	2 cut(s)	142, 344
BspTNI	GGTCTC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	5 cut(s)	145, 154, 322, 341, 347
BssAI	RCCGGY	5 cut(s)	145, 154, 322, 341, 347
BssECI	CCNNGG	2 cut(s)	205, 243
BssMI	GATC	2 cut(s)	42, 363
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	90, 446
BstBI	TTCGAA	1 cut(s)	102
BstC8I	GCNNGC	4 cut(s)	228, 315, 324, 386
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	45, 366
BstMAI	GTCTC	2 cut(s)	376, 436
BstMBI	GATC	2 cut(s)	42, 363
BstMCI	CGRYCG	3 cut(s)	170, 211, 366
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 239, 310, 319, 323, 332
BstSCI	CCNGG	4 cut(s)	132, 242, 243, 357
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	347
BstZI	CGGCCG	1 cut(s)	208
BsuRI	GGCC	5 cut(s)	66, 204, 210, 242, 273
BtgI	CCRYGG	1 cut(s)	205
Cac8I	GCNNGC	4 cut(s)	228, 315, 324, 386
Cfr10I	RCCGGY	5 cut(s)	145, 154, 322, 341, 347
Cfr13I	GGNCC	5 cut(s)	111, 181, 202, 217, 241
Cfr42I	CCGCGG	1 cut(s)	208
Cfr9I	CCCGGG	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	345
CspAI	ACCGGT	2 cut(s)	154, 341
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	2 cut(s)	44, 365
DpnII	GATC	2 cut(s)	42, 363
EaeI	YGGCCR	3 cut(s)	64, 208, 271
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	90, 446
EarI	CTCTTC	2 cut(s)	90, 446
EclXI	CGGCCG	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	3 cut(s)	111, 181, 217
Eco52I	CGGCCG	1 cut(s)	208
Eco88I	CYCGRG	3 cut(s)	243, 261, 308
EcoO109I	RGGNCCY	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	376
FaqI	GGGAC	2 cut(s)	97, 341
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	5 cut(s)	205, 208, 231, 240, 336
Fsp4HI	GCNGC	5 cut(s)	205, 208, 231, 240, 336
GluI	GCNGC	5 cut(s)	205, 208, 231, 240, 336
HaeIII	GGCC	5 cut(s)	66, 204, 210, 242, 273
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	22, 394
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	5 cut(s)	221, 283, 399, 436, 444
Hpy188III	TCNNGA	4 cut(s)	26, 46, 118, 391
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	5 cut(s)	41, 175, 178, 287, 403
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 239, 310, 319, 323, 332
HpyF3I	CTNAG	1 cut(s)	435
KflI	GGGWCCC	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	348
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	42, 363
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	1 cut(s)	347
MalI	GATC	2 cut(s)	44, 365
MboI	GATC	2 cut(s)	42, 363
MboII	GAAGA	5 cut(s)	41, 100, 107, 116, 463
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	71, 494
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	306, 422
MnlI	CCTC	6 cut(s)	125, 193, 207, 317, 421, 484
MroNI	GCCGGC	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	207, 256
MspR9I	CCNGG	4 cut(s)	134, 244, 245, 359
Mva1269I	GAATGC	1 cut(s)	228
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	236, 239, 310, 319, 323, 332
NaeI	GCCGGC	1 cut(s)	324
NciI	CCSGG	4 cut(s)	134, 244, 245, 359
NdeII	GATC	2 cut(s)	42, 363
NgoMIV	GCCGGC	1 cut(s)	322
NlaIV	GGNNCC	8 cut(s)	6, 112, 113, 138, 144, 218, 305, 346
NmeAIII	GCCGAG	2 cut(s)	249, 343
NspV	TTCGAA	1 cut(s)	102
OliI	CACNNNNGTG	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 372
PctI	GAATGC	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	300
PinAI	ACCGGT	2 cut(s)	154, 341
PkrI	GCNGC	5 cut(s)	206, 209, 232, 241, 337
Ple19I	CGATCG	1 cut(s)	366
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	111
PspN4I	GGNNCC	8 cut(s)	6, 112, 113, 138, 144, 218, 305, 346
PspPI	GGNCC	5 cut(s)	111, 181, 202, 217, 241
PspPPI	RGGWCCY	1 cut(s)	111
PspXI	VCTCGAGB	1 cut(s)	308
PvuI	CGATCG	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	256
RgaI	GCGATCGC	1 cut(s)	366
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	194
SacII	CCGCGG	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	172
SatI	GCNGC	5 cut(s)	205, 208, 231, 240, 336
Sau3AI	GATC	2 cut(s)	42, 363
Sau96I	GGNCC	5 cut(s)	111, 181, 202, 217, 241
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	4 cut(s)	134, 244, 245, 359
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	6 cut(s)	198, 258, 302, 432, 441, 462
SfaAI	GCGATCGC	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	308
Sfr303I	CCGCGG	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	102
SgfI	GCGATCGC	1 cut(s)	366
SgrAI	CRCCGGYG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	208
SgrDI	CGTCGACG	1 cut(s)	172
SinI	GGWCC	3 cut(s)	111, 181, 217
SlaI	CTCGAG	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	308, 389
SmoI	CTYRAG	2 cut(s)	308, 389
Sse9I	AATT	2 cut(s)	71, 494
SsiI	CCGC	8 cut(s)	80, 166, 184, 205, 207, 228, 231, 239
StyD4I	CCNGG	4 cut(s)	132, 242, 243, 357
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	4 cut(s)	102, 119, 173, 309
TasI	AATT	2 cut(s)	71, 494
TauI	GCSGC	4 cut(s)	207, 210, 233, 242
TfiI	GAWTC	1 cut(s)	394
TseI	GCWGC	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	364
TspMI	CCCGGG	1 cut(s)	243
Van91I	CCANNNNNTGG	1 cut(s)	300
VpaK11BI	GGWCC	3 cut(s)	111, 181, 217
XhoI	CTCGAG	1 cut(s)	308
XmaI	CCCGGG	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.