pycom07g23990
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009929
Physical Location & Seq
Forward (+)
24807808 .. 24809456
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23990.1

Sequence Viewer

Length: 1233 bp
ATGAACGACCCTGCAGATGATCATCTGCATGTAAGCCCTAATCTGAAGATAAAGCATTGCGGGGGGTCCCCCTCAGTGGTAGGGCTCGCAAGGAGAAAAAGGAGGAAAAGTGGGGGCTCTTCTGATTCCGTCTCTCTAGGATTTTTGGAGAAGATGAAGTCGAATCAAAGGCAGAGCCTTGAAGAAAGCAACGAGCTTGAACACGGCGGCGACAGTAACAACACTACCACCACCACCTCAGTGTCCGGCCCATTCGTGGCGGAACCACCGGCGACGGCGCTGACGATGAAGGAAGAGCTGACGGACCCAGTTCAACATTTAGACCCGCAGGGATCTCTGTCCATGGGGATTGTTCCGGTACCCGTTTCTACGGCGCTGAAACCGGCTAGGAGGTCGTCGAAGGACCGCCACACGAAGGTGGAGGGCCGGGGCCGGAGGATCCGAATGCCCGCCGTGTGTGCAGCCAGGATTTTTCAACTGACCCGTGAACTCGGCCACAAGTCCGACGGCGAAACCATAAGATGGCTACTGGAGCACGCCGAGCCTGCTATCATTCAAGCCACCGGCTCAGGTACCGTCCCCGCTATCGCCATCTCTGTCGGCGGCACTCTAAAGATACCCACTACTTCCCCTGCCAGACCCAACGGTGAAATTACTGAAATACCCAATAAGAGAAAGAAGATGAGAGGTTCCACGGATGAGTTCATTGACGCGCACGACCAGAACTCTCTGCCTAGTGGGTTGGCACCCATAGCACCAATGACGTACGGTGGCGGTGGCGGTGGAGGTGGAGGTGGCTTTGTGCCTATGTGGCAAGTCGGAGCAACCGGCGCGGCTGGGCCTTTCTTCATGTTTCCGAACTCCGGGGCGATTCAGAACCAGCCTCAGCTCTGGGCTATTCCGACGGCGGATTGCACGACGCCGATTTTCAATTTCCAACCCAGACCCATGTCCAATTTCGTCTCTGCATTCCAACCTGGGGTTCAAGTTGGTGGTGTTAGCGGCGGAGATGGGCAGTTGCAGGCTTCTTCGGGCTCGATTTCGAGCGGCTCTTCTAGTTTGGGACACAGTTTGGACTCGGCCTCGGGGACCAGTGCTGCAGCCGCCGCTGCTGCTCCGCCGAGCTCCGCAACTCAGATGCTGAGGGATTTTTCGTTGGAGATTTATGATAAGAAGGAGCTTCAGTTCATGGGGAAGGCTGCAAATGCACAAACGACATATTCGGAATCTTGA

Protein Analysis

411

Amino Acids

42.81

Weight (kDa)

8.38

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 132 - 195 1.4e-24 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 358, 572
AccB1I GGYRCC 3 cut(s) 358, 572, 745
AccB7I CCANNNNNTGG 1 cut(s) 522
AccBSI CCGCTC 1 cut(s) 1047
AccII CGCG 2 cut(s) 713, 833
AclWI GGATC 3 cut(s) 340, 433, 446
AcoI YGGCCR 1 cut(s) 493
AcuI CTGAAG 2 cut(s) 65, 1166
AcyI GRCGYC 1 cut(s) 920
AfaI GTAC 3 cut(s) 360, 574, 767
AfiI CCNNNNNNNGG 6 cut(s) 76, 256, 415, 522, 863, 979
AgsI TTSAA 7 cut(s) 182, 200, 314, 476, 557, 931, 986
AjnI CCWGG 2 cut(s) 464, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 966, 998
AleI CACNNNNGTG 2 cut(s) 239, 416
AloI GAACNNNNNNTCC 2 cut(s) 1169, 1201
AluBI AGCT 5 cut(s) 196, 298, 889, 1125, 1180
AluI AGCT 5 cut(s) 196, 298, 889, 1125, 1180
Alw21I GWGCWC 2 cut(s) 537, 1127
Alw26I GTCTC 2 cut(s) 136, 967
AlwI GGATC 3 cut(s) 340, 433, 446
AlwNI CAGNNNCTG 1 cut(s) 1141
Ama87I CYCGRG 1 cut(s) 1084
AoxI GGCC 6 cut(s) 247, 424, 430, 493, 839, 1080
ApeKI GCWGC 6 cut(s) 461, 1097, 1100, 1109, 1112, 1199
Asp718I GGTACC 2 cut(s) 358, 572
AspLEI GCGC 4 cut(s) 280, 376, 715, 833
AspS9I GGNCC 8 cut(s) 66, 248, 304, 403, 424, 430, 839, 1089
AsuC2I CCSGG 2 cut(s) 428, 865
AsuHPI GGTGA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 1084
AvaII GGWCC 4 cut(s) 66, 304, 403, 1089
BamHI GGATCC 1 cut(s) 438
BanI GGYRCC 3 cut(s) 358, 572, 745
BanII GRGCYC 4 cut(s) 87, 119, 1037, 1127
Bbv12I GWGCWC 2 cut(s) 537, 1127
BbvCI CCTCAGC 2 cut(s) 885, 1142
BbvI GCAGC 6 cut(s) 473, 1084, 1096, 1099, 1112, 1186
BccI CCATC 3 cut(s) 516, 599, 1004
BceAI ACGGC 6 cut(s) 220, 291, 387, 437, 523, 921
BciT130I CCWGG 2 cut(s) 466, 978
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 2 cut(s) 428, 865
BcoDI GTCTC 2 cut(s) 136, 967
BfaI CTAG 4 cut(s) 137, 387, 735, 1056
BfmI CTRYAG 2 cut(s) 12, 1098
BfoI RGCGCY 2 cut(s) 281, 377
BglI GCCNNNNNGGC 1 cut(s) 811
Bme1390I CCNGG 4 cut(s) 428, 466, 865, 978
Bme18I GGWCC 4 cut(s) 66, 304, 403, 1089
BmeT110I CYCGRG 1 cut(s) 1084
BmgT120I GGNCC 8 cut(s) 66, 248, 304, 403, 424, 430, 839, 1089
BmrFI CCNGG 4 cut(s) 428, 466, 865, 978
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 1128
BmuI ACTGGG 1 cut(s) 302
BoxI GACNNNNGTC 1 cut(s) 949
BpmI CTGGAG 1 cut(s) 551
Bpu10I CCTNAGC 3 cut(s) 568, 885, 1142
BpuMI CCSGG 2 cut(s) 428, 865
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 920
BsaJI CCNNGG 6 cut(s) 342, 427, 693, 864, 977, 1083
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 4 cut(s) 94, 124, 1169, 1199
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 256, 415, 522, 863, 979
Bse118I RCCGGY 4 cut(s) 268, 382, 563, 827
Bse1I ACTGG 3 cut(s) 308, 534, 1092
Bse3DI GCAATG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 2 cut(s) 466, 978
BseDI CCNNGG 6 cut(s) 342, 427, 693, 864, 977, 1083
BseGI GGATG 1 cut(s) 703
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 6 cut(s) 76, 256, 415, 522, 863, 979
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 6 cut(s) 87, 252, 582, 899, 1133, 1148
BseNI ACTGG 3 cut(s) 308, 534, 1092
BseXI GCAGC 6 cut(s) 473, 1084, 1096, 1099, 1112, 1186
BseYI CCCAGC 1 cut(s) 836
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 2 cut(s) 713, 833
BshFI GGCC 6 cut(s) 249, 426, 432, 495, 841, 1082
BshNI GGYRCC 3 cut(s) 358, 572, 745
BsiHKAI GWGCWC 2 cut(s) 537, 1127
BsiHKCI CYCGRG 1 cut(s) 1084
BsiSI CCGG 9 cut(s) 246, 269, 356, 383, 427, 433, 564, 828, 864
BsiWI CGTACG 1 cut(s) 765
BslFI GGGAC 4 cut(s) 52, 563, 1077, 1102
BslI CCNNNNNNNGG 6 cut(s) 76, 256, 415, 522, 863, 979
BsmAI GTCTC 2 cut(s) 136, 967
BsmBI CGTCTC 2 cut(s) 136, 967
BsmFI GGGAC 4 cut(s) 52, 563, 1077, 1102
BsmI GAATGC 2 cut(s) 450, 968
BsnI GGCC 6 cut(s) 249, 426, 432, 495, 841, 1082
BsoBI CYCGRG 1 cut(s) 1084
Bsp1286I GDGCHC 5 cut(s) 87, 119, 537, 1037, 1127
Bsp143I GATC 3 cut(s) 19, 332, 438
Bsp19I CCATGG 1 cut(s) 342
BspANI GGCC 6 cut(s) 249, 426, 432, 495, 841, 1082
BspCNI CTCAG 6 cut(s) 86, 251, 581, 898, 1134, 1147
BspFNI CGCG 2 cut(s) 713, 833
BspMAI CTGCAG 2 cut(s) 16, 1102
BspPI GGATC 3 cut(s) 340, 433, 446
BspQI GCTCTTC 3 cut(s) 124, 288, 1057
BspT107I GGYRCC 3 cut(s) 358, 572, 745
BsrBI CCGCTC 1 cut(s) 1047
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 4 cut(s) 268, 382, 563, 827
BsrI ACTGG 3 cut(s) 308, 534, 1092
BssAI RCCGGY 4 cut(s) 268, 382, 563, 827
BssECI CCNNGG 6 cut(s) 342, 427, 693, 864, 977, 1083
BssMI GATC 3 cut(s) 19, 332, 438
BssNI GRCGYC 1 cut(s) 920
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 466, 978
Bst4CI ACNGT 5 cut(s) 215, 577, 647, 770, 1070
Bst6I CTCTTC 3 cut(s) 124, 288, 1057
BstACI GRCGYC 1 cut(s) 920
BstC8I GCNNGC 5 cut(s) 87, 450, 537, 546, 1023
BstDEI CTNAG 6 cut(s) 73, 238, 568, 885, 1134, 1142
BstDSI CCRYGG 2 cut(s) 342, 693
BstF5I GGATG 1 cut(s) 703
BstFNI CGCG 2 cut(s) 713, 833
BstH2I RGCGCY 2 cut(s) 281, 377
BstHHI GCGC 4 cut(s) 280, 376, 715, 833
BstKTI GATC 3 cut(s) 22, 335, 441
BstMAI GTCTC 2 cut(s) 136, 967
BstMBI GATC 3 cut(s) 19, 332, 438
BstNI CCWGG 2 cut(s) 466, 978
BstNSI RCATGY 1 cut(s) 32
BstPAI GACNNNNGTC 1 cut(s) 949
BstSCI CCNGG 4 cut(s) 426, 464, 863, 976
BstSFI CTRYAG 2 cut(s) 12, 1098
BstUI CGCG 2 cut(s) 713, 833
BstV1I GCAGC 6 cut(s) 473, 1084, 1096, 1099, 1112, 1186
BstX2I RGATCY 2 cut(s) 332, 438
BstYI RGATCY 2 cut(s) 332, 438
BsuRI GGCC 6 cut(s) 249, 426, 432, 495, 841, 1082
BtgI CCRYGG 2 cut(s) 342, 693
BtsCI GGATG 1 cut(s) 703
BtsIMutI CAGTG 3 cut(s) 81, 246, 1099
Cac8I GCNNGC 5 cut(s) 87, 450, 537, 546, 1023
CaiI CAGNNNCTG 1 cut(s) 1141
CfoI GCGC 4 cut(s) 280, 376, 715, 833
Cfr10I RCCGGY 4 cut(s) 268, 382, 563, 827
Cfr13I GGNCC 8 cut(s) 66, 248, 304, 403, 424, 430, 839, 1089
CseI GACGC 2 cut(s) 719, 928
Csp6I GTAC 3 cut(s) 359, 573, 766
CviAII CATG 5 cut(s) 29, 343, 850, 949, 1189
CviQI GTAC 3 cut(s) 359, 573, 766
DdeI CTNAG 6 cut(s) 73, 238, 568, 885, 1134, 1142
DpnI GATC 3 cut(s) 21, 334, 440
DpnII GATC 3 cut(s) 19, 332, 438
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 3 cut(s) 124, 288, 1057
EarI CTCTTC 3 cut(s) 124, 288, 1057
EciI GGCGGA 4 cut(s) 275, 923, 1020, 1107
Ecl136II GAGCTC 1 cut(s) 1125
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 4 cut(s) 87, 119, 1037, 1127
Eco47I GGWCC 4 cut(s) 66, 304, 403, 1089
Eco53kI GAGCTC 1 cut(s) 1125
Eco57I CTGAAG 2 cut(s) 65, 1166
Eco88I CYCGRG 1 cut(s) 1084
EcoICRI GAGCTC 1 cut(s) 1125
EcoO109I RGGNCCY 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 464, 976
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 4 cut(s) 87, 119, 1037, 1127
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 2 cut(s) 136, 967
FaeI CATG 5 cut(s) 32, 346, 853, 952, 1192
FaqI GGGAC 4 cut(s) 52, 563, 1077, 1102
FatI CATG 5 cut(s) 28, 342, 849, 948, 1188
FauI CCCGC 4 cut(s) 53, 333, 457, 589
FbaI TGATCA 1 cut(s) 19
FokI GGATG 1 cut(s) 710
FriOI GRGCYC 4 cut(s) 87, 119, 1037, 1127
FspBI CTAG 4 cut(s) 137, 387, 735, 1056
GlaI GCGC 4 cut(s) 279, 375, 714, 832
GsaI CCCAGC 1 cut(s) 840
GsuI CTGGAG 1 cut(s) 551
HaeII RGCGCY 2 cut(s) 281, 377
HaeIII GGCC 6 cut(s) 249, 426, 432, 495, 841, 1082
HapII CCGG 9 cut(s) 246, 269, 356, 383, 427, 433, 564, 828, 864
HgaI GACGC 2 cut(s) 719, 928
HhaI GCGC 4 cut(s) 280, 376, 715, 833
Hin1I GRCGYC 1 cut(s) 920
Hin1II CATG 5 cut(s) 32, 346, 853, 952, 1192
Hin6I GCGC 4 cut(s) 278, 374, 713, 831
HinP1I GCGC 4 cut(s) 278, 374, 713, 831
HinfI GANTC 5 cut(s) 125, 163, 871, 1076, 1226
HpaII CCGG 9 cut(s) 246, 269, 356, 383, 427, 433, 564, 828, 864
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 1 cut(s) 488
Hpy188III TCNNGA 1 cut(s) 1230
Hpy8I GTNNAC 1 cut(s) 488
Hpy99I CGWCG 5 cut(s) 277, 400, 509, 907, 922
HpyAV CCTTC 5 cut(s) 283, 394, 409, 1168, 1189
HpyCH4III ACNGT 5 cut(s) 215, 577, 647, 770, 1070
HpyCH4IV ACGT 1 cut(s) 764
HpyCH4V TGCA 9 cut(s) 14, 28, 461, 915, 968, 1021, 1100, 1202, 1208
HpyF3I CTNAG 6 cut(s) 73, 238, 568, 885, 1134, 1142
HpySE526I ACGT 1 cut(s) 764
Hsp92I GRCGYC 1 cut(s) 920
Hsp92II CATG 5 cut(s) 32, 346, 853, 952, 1192
HspAI GCGC 4 cut(s) 278, 374, 713, 831
KflI GGGWCCC 1 cut(s) 66
KpnI GGTACC 2 cut(s) 362, 576
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 3 cut(s) 19, 332, 438
LguI GCTCTTC 3 cut(s) 124, 288, 1057
LmnI GCTCC 5 cut(s) 532, 821, 1120, 1130, 1177
Lsp1109I GCAGC 6 cut(s) 473, 1084, 1096, 1099, 1112, 1186
LweI GCATC 1 cut(s) 1128
MaeI CTAG 4 cut(s) 137, 387, 735, 1056
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 1 cut(s) 215
MalI GATC 3 cut(s) 21, 334, 440
MbiI CCGCTC 1 cut(s) 1047
MboI GATC 3 cut(s) 19, 332, 438
MboII GAAGA 9 cut(s) 58, 111, 163, 194, 305, 691, 838, 1020, 1044
MflI RGATCY 2 cut(s) 332, 438
MhlI GDGCHC 5 cut(s) 87, 119, 537, 1037, 1127
MluCI AATT 3 cut(s) 651, 931, 955
MlyI GAGTC 1 cut(s) 1070
MmeI TCCRAC 6 cut(s) 528, 799, 926, 961, 997, 1137
MslI CAYNNNNRTG 3 cut(s) 27, 239, 416
MspA1I CMGCKG 1 cut(s) 1109
MspI CCGG 9 cut(s) 246, 269, 356, 383, 427, 433, 564, 828, 864
MspR9I CCNGG 4 cut(s) 428, 466, 865, 978
Mva1269I GAATGC 2 cut(s) 450, 968
MvaI CCWGG 2 cut(s) 466, 978
MvnI CGCG 2 cut(s) 713, 833
NciI CCSGG 2 cut(s) 428, 865
NcoI CCATGG 1 cut(s) 342
NdeII GATC 3 cut(s) 19, 332, 438
NlaIII CATG 5 cut(s) 32, 346, 853, 952, 1192
NmeAIII GCCGAG 4 cut(s) 471, 565, 1058, 1146
NspI RCATGY 1 cut(s) 32
OliI CACNNNNGTG 2 cut(s) 239, 416
PciSI GCTCTTC 3 cut(s) 124, 288, 1057
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 2 cut(s) 450, 968
PfeI GAWTC 4 cut(s) 125, 163, 871, 1226
Pfl23II CGTACG 1 cut(s) 765
PflMI CCANNNNNTGG 1 cut(s) 522
PleI GAGTC 1 cut(s) 1070
PpsI GAGTC 1 cut(s) 1070
PpuMI RGGWCCY 1 cut(s) 66
PshAI GACNNNNGTC 1 cut(s) 949
Psp124BI GAGCTC 1 cut(s) 1127
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 464, 976
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 2 cut(s) 464, 976
PspLI CGTACG 1 cut(s) 765
PspPI GGNCC 8 cut(s) 66, 248, 304, 403, 424, 430, 839, 1089
PspPPI RGGWCCY 1 cut(s) 66
PstI CTGCAG 2 cut(s) 16, 1102
PstNI CAGNNNCTG 1 cut(s) 1141
PsuI RGATCY 2 cut(s) 332, 438
RsaI GTAC 3 cut(s) 360, 574, 767
RsaNI GTAC 3 cut(s) 359, 573, 766
RseI CAYNNNNRTG 3 cut(s) 27, 239, 416
SacI GAGCTC 1 cut(s) 1127
SapI GCTCTTC 3 cut(s) 124, 288, 1057
Sau3AI GATC 3 cut(s) 19, 332, 438
Sau96I GGNCC 8 cut(s) 66, 248, 304, 403, 424, 430, 839, 1089
SchI GAGTC 1 cut(s) 1070
ScrFI CCNGG 4 cut(s) 428, 466, 865, 978
SduI GDGCHC 5 cut(s) 87, 119, 537, 1037, 1127
SfaNI GCATC 1 cut(s) 1128
SfcI CTRYAG 2 cut(s) 12, 1098
SgrAI CRCCGGYG 1 cut(s) 268
SinI GGWCC 4 cut(s) 66, 304, 403, 1089
SmiMI CAYNNNNRTG 3 cut(s) 27, 239, 416
Sse9I AATT 3 cut(s) 651, 931, 955
SspMI CTAG 4 cut(s) 137, 387, 735, 1056
SstI GAGCTC 1 cut(s) 1127
StyD4I CCNGG 4 cut(s) 426, 464, 863, 976
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 5 cut(s) 215, 577, 647, 770, 1070
TaiI ACGT 1 cut(s) 767
TaqI TCGA 4 cut(s) 161, 398, 1037, 1043
TasI AATT 3 cut(s) 651, 931, 955
TauI GCSGC 7 cut(s) 210, 606, 836, 1005, 1050, 1106, 1109
TfiI GAWTC 4 cut(s) 125, 163, 871, 1226
TscAI CASTG 3 cut(s) 81, 246, 1099
TseI GCWGC 6 cut(s) 461, 1097, 1100, 1109, 1112, 1199
TspDTI ATGAA 6 cut(s) 17, 170, 302, 694, 838, 1177
TspGWI ACGGA 3 cut(s) 118, 317, 710
TspRI CASTG 3 cut(s) 81, 246, 1099
Van91I CCANNNNNTGG 1 cut(s) 522
VpaK11BI GGWCC 4 cut(s) 66, 304, 403, 1089
XceI RCATGY 1 cut(s) 32
XspI CTAG 4 cut(s) 137, 387, 735, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.