RchiOBHm_Chr1g0376331
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009929
Physical Location & Seq
Forward (+)
63557230 .. 63558837
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59998

Sequence Viewer

Length: 981 bp
ATGGAACCAAATCAAAGGCAGAGTCTTGAAGAAACCGACGGGATCACGAACCCATCAGTTTCCGGCCAACAATTTCCGGCGGTGGCGAAGAAAGAAGAGTTCGAAGATGGGTCCCTCTCGATGGGTCTTATCCCGGTTCCGGCACCGGCGAAACCGGTGGTGAAGCGGTCGTCGACGAAGGACCGCCACACAAAGGTGGAGGGCCGCGGCCGGAGGGTCCGAATGCCCGCCGCCTGTGCGGCCCGGGTTTTCCAGCTGACCCGAGAACTCGGCCACAAGTCCGACGGCGAAACCGTCAGGTGGCTCCTCGAGCACGCCGAGCCGGCGATAATCGCAGCCACTGGTACCGGCACAGTCCCGGCAATCGCCGTCTCCGTCGGTGGCACGCTCAAGATTCCGACGAGTTCTCTGGCGAACCCGAATGGAGAGGTCTCTGAGCTTCCGAGAAAGAAGAGAAAGCTACATTGCAATAGTGATTTTGTTGATGTGGAGGAATTGAGATCAATTTCGAGTGGCTTGGCACCGATAGCGCCGGTGAACTACGGCGGCGGTGGCGGTGGGGCTTTGTTGCCTATGTGGCAATTTGGGGCGAATGTTCCGTTCTTCATGTTCCCAAACTCTGGTTGGGCTATTCCTTCGGATTCAGTTTCAGGCCACACCATTTTCGATTTGCAAGGAAGGCCTATATCGAACTTCCCCGTCACAGCGTTGCAATCTGGGGTTCAAGTTTGTGGTGATGTTGATGTGCAGGCCACTTCTGGTTCGATTTCGAGTGGTGGTGGTGGTGGGAGCGGTTCGACTAGTTTGGGAGCCAGTAATAGTAATGCGGTTACTAGTAGTGACACTAGTGCTACAACAGCTGCTCCAATTAGTCATAGTCAGTTGCTGAGGGACTTTTCTTTGGATACTTTGGACAAGAGGGAGCTTCAGTTCTTGGGTGGTCTCTGTGGAAATTCAGAAGCTCAATACTCAAAGCCTTGA

Protein Analysis

326

Amino Acids

34.0

Weight (kDa)

6.32

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 58 - 127 6.7e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 3 cut(s) 142, 344, 520
AccB7I CCANNNNNTGG 1 cut(s) 620
AccBSI CCGCTC 1 cut(s) 792
AccI GTMKAC 1 cut(s) 173
AccII CGCG 1 cut(s) 207
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 3 cut(s) 64, 208, 271
AcsI RAATTY 1 cut(s) 952
AcuI CTGAAG 1 cut(s) 911
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
AgeI ACCGGT 1 cut(s) 154
AgsI TTSAA 2 cut(s) 29, 725
AhlI ACTAGT 3 cut(s) 800, 833, 845
AleI CACNNNNGTG 1 cut(s) 194
AloI GAACNNNNNNTCC 2 cut(s) 914, 946
AluBI AGCT 6 cut(s) 256, 439, 460, 860, 925, 962
AluI AGCT 6 cut(s) 256, 439, 460, 860, 925, 962
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 376, 436, 947
AlwI GGATC 1 cut(s) 50
AlwNI CAGNNNCTG 2 cut(s) 341, 886
Ama87I CYCGRG 3 cut(s) 243, 261, 308
AoxI GGCC 8 cut(s) 64, 202, 208, 240, 271, 652, 680, 750
ApeKI GCWGC 2 cut(s) 335, 860
ApoI RAATTY 1 cut(s) 952
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AsiGI ACCGGT 1 cut(s) 154
Asp718I GGTACC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 5 cut(s) 111, 181, 202, 217, 241
AsuC2I CCSGG 4 cut(s) 134, 244, 245, 359
AsuHPI GGTGA 3 cut(s) 172, 547, 746
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 3 cut(s) 243, 261, 308
AvaII GGWCC 3 cut(s) 111, 181, 217
BanI GGYRCC 3 cut(s) 142, 344, 520
Bbv12I GWGCWC 1 cut(s) 315
BbvCI CCTCAGC 1 cut(s) 887
BbvI GCAGC 2 cut(s) 347, 847
BccI CCATC 3 cut(s) 61, 101, 115
BceAI ACGGC 3 cut(s) 301, 353, 559
BciVI GTATCC 1 cut(s) 898
BcnI CCSGG 4 cut(s) 134, 244, 245, 359
BcoDI GTCTC 3 cut(s) 376, 436, 947
BcuI ACTAGT 3 cut(s) 800, 833, 845
BfaI CTAG 3 cut(s) 801, 834, 846
BfoI RGCGCY 1 cut(s) 533
BfuI GTATCC 1 cut(s) 898
BglI GCCNNNNNGGC 3 cut(s) 239, 323, 577
BisI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 861
BlsI GCNGC 7 cut(s) 206, 209, 232, 241, 337, 548, 862
Bme1390I CCNGG 4 cut(s) 134, 244, 245, 359
Bme18I GGWCC 3 cut(s) 111, 181, 217
BmeT110I CYCGRG 3 cut(s) 243, 261, 308
BmgT120I GGNCC 5 cut(s) 111, 181, 202, 217, 241
BmrFI CCNGG 4 cut(s) 134, 244, 245, 359
Bpu10I CCTNAGC 1 cut(s) 887
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 4 cut(s) 134, 244, 245, 359
BsaI GGTCTC 2 cut(s) 436, 947
BsaJI CCNNGG 2 cut(s) 205, 243
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 4 cut(s) 847, 877, 914, 944
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
Bse118I RCCGGY 5 cut(s) 145, 154, 322, 347, 532
Bse1I ACTGG 2 cut(s) 346, 813
Bse3DI GCAATG 1 cut(s) 463
BseDI CCNNGG 2 cut(s) 205, 243
BseLI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 426, 878
BseNI ACTGG 2 cut(s) 346, 813
BseRI GAGGAG 1 cut(s) 296
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 347, 847
BsgI GTGCAG 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 2 cut(s) 170, 211
BshFI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BshNI GGYRCC 3 cut(s) 142, 344, 520
BshTI ACCGGT 1 cut(s) 154
BsiEI CGRYCG 2 cut(s) 170, 211
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 3 cut(s) 243, 261, 308
BslFI GGGAC 3 cut(s) 97, 341, 905
BslI CCNNNNNNNGG 5 cut(s) 121, 139, 193, 300, 620
BsmAI GTCTC 3 cut(s) 376, 436, 947
BsmBI CGTCTC 1 cut(s) 376
BsmFI GGGAC 3 cut(s) 97, 341, 905
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
Bso31I GGTCTC 2 cut(s) 436, 947
BsoBI CYCGRG 3 cut(s) 243, 261, 308
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 2 cut(s) 42, 500
BspANI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BspCNI CTCAG 2 cut(s) 427, 879
BspFNI CGCG 1 cut(s) 207
BspPI GGATC 1 cut(s) 50
BspT104I TTCGAA 1 cut(s) 102
BspT107I GGYRCC 3 cut(s) 142, 344, 520
BspTNI GGTCTC 2 cut(s) 436, 947
BsrBI CCGCTC 1 cut(s) 792
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 5 cut(s) 145, 154, 322, 347, 532
BsrI ACTGG 2 cut(s) 346, 813
BssAI RCCGGY 5 cut(s) 145, 154, 322, 347, 532
BssECI CCNNGG 2 cut(s) 205, 243
BssMI GATC 2 cut(s) 42, 500
Bst4CI ACNGT 2 cut(s) 295, 355
Bst6I CTCTTC 2 cut(s) 90, 446
BstBI TTCGAA 1 cut(s) 102
BstC8I GCNNGC 5 cut(s) 228, 315, 324, 386, 750
BstDEI CTNAG 2 cut(s) 435, 887
BstDSI CCRYGG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 2 cut(s) 45, 503
BstMAI GTCTC 3 cut(s) 376, 436, 947
BstMBI GATC 2 cut(s) 42, 500
BstMCI CGRYCG 2 cut(s) 170, 211
BstSCI CCNGG 4 cut(s) 132, 242, 243, 357
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 347, 847
BstZI CGGCCG 1 cut(s) 208
BsuI GTATCC 1 cut(s) 898
BsuRI GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
BtgI CCRYGG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 5 cut(s) 228, 315, 324, 386, 750
CaiI CAGNNNCTG 2 cut(s) 341, 886
CfoI GCGC 1 cut(s) 532
Cfr10I RCCGGY 5 cut(s) 145, 154, 322, 347, 532
Cfr13I GGNCC 5 cut(s) 111, 181, 202, 217, 241
Cfr42I CCGCGG 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 243
Csp6I GTAC 1 cut(s) 345
CspAI ACCGGT 1 cut(s) 154
CviAII CATG 1 cut(s) 607
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 435, 887
DpnI GATC 2 cut(s) 44, 502
DpnII GATC 2 cut(s) 42, 500
EaeI YGGCCR 3 cut(s) 64, 208, 271
EagI CGGCCG 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 90, 446
EarI CTCTTC 2 cut(s) 90, 446
EclXI CGGCCG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 682
Eco31I GGTCTC 2 cut(s) 436, 947
Eco47I GGWCC 3 cut(s) 111, 181, 217
Eco52I CGGCCG 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 911
Eco88I CYCGRG 3 cut(s) 243, 261, 308
EcoO109I RGGNCCY 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 376
FaeI CATG 1 cut(s) 610
FaiI YATR 4 cut(s) 575, 608, 686, 876
FaqI GGGAC 3 cut(s) 97, 341, 905
FatI CATG 1 cut(s) 606
FauI CCCGC 1 cut(s) 235
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 861
Fsp4HI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 861
FspBI CTAG 3 cut(s) 801, 834, 846
GlaI GCGC 1 cut(s) 531
GluI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 861
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 8 cut(s) 66, 204, 210, 242, 273, 654, 682, 752
HhaI GCGC 1 cut(s) 532
Hin1II CATG 1 cut(s) 610
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 3 cut(s) 22, 394, 641
HphI GGTGA 3 cut(s) 172, 547, 746
Hpy166II GTNNAC 2 cut(s) 174, 538
Hpy188I TCNGA 7 cut(s) 221, 283, 399, 436, 444, 640, 958
Hpy188III TCNNGA 4 cut(s) 26, 46, 118, 391
Hpy8I GTNNAC 2 cut(s) 174, 538
Hpy99I CGWCG 6 cut(s) 41, 175, 178, 287, 380, 403
HpyAV CCTTC 3 cut(s) 172, 645, 672
HpyCH4III ACNGT 2 cut(s) 295, 355
HpyCH4V TGCA 4 cut(s) 468, 673, 712, 748
HpyF3I CTNAG 2 cut(s) 435, 887
Hsp92II CATG 1 cut(s) 610
HspAI GCGC 1 cut(s) 530
KflI GGGWCCC 1 cut(s) 111
KpnI GGTACC 1 cut(s) 348
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 2 cut(s) 42, 500
LmnI GCTCC 5 cut(s) 309, 789, 809, 868, 922
Lsp1109I GCAGC 2 cut(s) 347, 847
MaeI CTAG 3 cut(s) 801, 834, 846
MaeIII GTNAC 3 cut(s) 700, 829, 839
MalI GATC 2 cut(s) 44, 502
MbiI CCGCTC 1 cut(s) 792
MboI GATC 2 cut(s) 42, 500
MboII GAAGA 6 cut(s) 41, 100, 107, 116, 463, 595
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 6 cut(s) 71, 494, 504, 581, 867, 952
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 306, 422
MnlI CCTC 8 cut(s) 125, 193, 207, 317, 421, 484, 882, 912
MroNI GCCGGC 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 3 cut(s) 207, 256, 860
MspR9I CCNGG 4 cut(s) 134, 244, 245, 359
Mva1269I GAATGC 1 cut(s) 228
MvnI CGCG 1 cut(s) 207
NaeI GCCGGC 1 cut(s) 324
NciI CCSGG 4 cut(s) 134, 244, 245, 359
NdeII GATC 2 cut(s) 42, 500
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 610
NmeAIII GCCGAG 2 cut(s) 249, 343
NmuCI GTSAC 2 cut(s) 700, 839
NspV TTCGAA 1 cut(s) 102
OliI CACNNNNGTG 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 308
PceI AGGCCT 1 cut(s) 682
PcsI WCGNNNNNNNCGW 3 cut(s) 291, 315, 372
PctI GAATGC 1 cut(s) 228
PdiI GCCGGC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 394, 641
PflMI CCANNNNNTGG 1 cut(s) 620
PinAI ACCGGT 1 cut(s) 154
PkrI GCNGC 7 cut(s) 206, 209, 232, 241, 337, 548, 862
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 111
PspPI GGNCC 5 cut(s) 111, 181, 202, 217, 241
PspPPI RGGWCCY 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 308
PstNI CAGNNNCTG 2 cut(s) 341, 886
PvuII CAGCTG 2 cut(s) 256, 860
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 194
SacII CCGCGG 1 cut(s) 208
SalI GTCGAC 1 cut(s) 172
SatI GCNGC 7 cut(s) 205, 208, 231, 240, 336, 547, 861
Sau3AI GATC 2 cut(s) 42, 500
Sau96I GGNCC 5 cut(s) 111, 181, 202, 217, 241
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 4 cut(s) 134, 244, 245, 359
SduI GDGCHC 1 cut(s) 315
SetI ASST 9 cut(s) 198, 258, 302, 432, 441, 462, 862, 927, 964
Sfr274I CTCGAG 1 cut(s) 308
Sfr303I CCGCGG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 102
SgrAI CRCCGGYG 2 cut(s) 145, 532
SgrBI CCGCGG 1 cut(s) 208
SgrDI CGTCGACG 1 cut(s) 172
SinI GGWCC 3 cut(s) 111, 181, 217
SlaI CTCGAG 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 308, 389
SmoI CTYRAG 2 cut(s) 308, 389
SpeI ACTAGT 3 cut(s) 800, 833, 845
Sse9I AATT 6 cut(s) 71, 494, 504, 581, 867, 952
SseBI AGGCCT 1 cut(s) 682
SspMI CTAG 3 cut(s) 801, 834, 846
StuI AGGCCT 1 cut(s) 682
StyD4I CCNGG 4 cut(s) 132, 242, 243, 357
TaaI ACNGT 2 cut(s) 295, 355
TasI AATT 6 cut(s) 71, 494, 504, 581, 867, 952
TauI GCSGC 5 cut(s) 207, 210, 233, 242, 549
TfiI GAWTC 2 cut(s) 394, 641
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 2 cut(s) 700, 839
TseI GCWGC 2 cut(s) 335, 860
Tsp45I GTSAC 2 cut(s) 700, 839
TspDTI ATGAA 1 cut(s) 595
TspGWI ACGGA 2 cut(s) 364, 588
TspMI CCCGGG 1 cut(s) 243
TspRI CASTG 1 cut(s) 346
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 3 cut(s) 111, 181, 217
XapI RAATTY 1 cut(s) 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XhoI CTCGAG 1 cut(s) 308
XmaI CCCGGG 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 3 cut(s) 801, 834, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.