AT5G52200

Protein phosphatase inhibitor 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008626
Physical Location & Seq
Reverse (-)
21202549 .. 21204816
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52200.1

Sequence Viewer

Length: 576 bp
ATGACCGAACCAAAGAGGGGGCGTGTTCAATGGGATGAAGCTAATATAGTGGAGATTGAATCGAACAAACCTGTTAGGCAGAAGATTACTGAACCAAAGACACCATACCACCCGATGATGGATGATGATGGTTCTTTGTCTCCTAGAGGAAGAGCGTTTGATGAATGTGTTGATGATATGCAACGAGCTGAAGAACTGAGGAATGTTCTGAATGATGCAGCAGCTTCTTCCAGTAGAAATAGTAGCCAGGGTTCTGGTGGTGGTGGCTGGAGCTCGTCTGATGAAGAAGAAGAAGAAGCAGATCCAATGGATCAAGATGAAGAAGGTTCTGGAAGTGGTAAAAATGAACGTTTCAACGCACACAGAAAAGCACATTACGACGAGTTTCGGAAGGTGAAGGAACTGAGATCCTCAGGGTCATTCTATGAAGAAGAAGAGGAAGAGGATGATGGTGCAAAAGGTAGTAAATCAGAGACAACAACAAACTCACGACACACTAAAGGCGGAAACAAAGAGTTAGATGCAACCAAAACGGTATCAGGGACGTCGTCATCTTCATCCCCTGAGTTAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IPP-2

Protein Analysis

191

Amino Acids

21.1

Weight (kDa)

4.68

Isoelectric Point (pI)

74.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPP-2 PF04979 9 - 147 1.6e-23 Protein phosphatase inhibitor 2 (IPP-2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 548
AciI CCGC 1 cut(s) 504
AclI AACGTT 1 cut(s) 349
AclWI GGATC 3 cut(s) 296, 318, 402
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 545
AfiI CCNNNNNNNGG 2 cut(s) 17, 118
AgsI TTSAA 3 cut(s) 29, 59, 355
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 4 cut(s) 41, 188, 224, 273
AluI AGCT 4 cut(s) 41, 188, 224, 273
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 2 cut(s) 144, 467
AlwI GGATC 3 cut(s) 296, 318, 402
ApeKI GCWGC 2 cut(s) 218, 221
AsuHPI GGTGA 1 cut(s) 406
AxyI CCTNAGG 1 cut(s) 412
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 230, 233
BccI CCATC 3 cut(s) 112, 122, 443
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 144, 467
BfaI CTAG 1 cut(s) 144
BisI GCNGC 2 cut(s) 219, 222
BlsI GCNGC 2 cut(s) 220, 223
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 205, 511
BpmI CTGGAG 1 cut(s) 289
BsaHI GRCGYC 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 118
Bse1I ACTGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 4 cut(s) 40, 127, 451, 557
BseLI CCNNNNNNNGG 2 cut(s) 17, 118
BseMII CTCAG 4 cut(s) 188, 395, 426, 555
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 230, 233
BsiHKAI GWGCWC 1 cut(s) 275
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 2 cut(s) 17, 118
BsmAI GTCTC 2 cut(s) 144, 467
BsmFI GGGAC 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 301, 310, 407
BspACI CCGC 1 cut(s) 504
BspCNI CTCAG 4 cut(s) 189, 396, 425, 556
BspPI GGATC 3 cut(s) 296, 318, 402
BspQI GCTCTTC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 3 cut(s) 301, 310, 407
BssNI GRCGYC 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 3 cut(s) 145, 429, 435
BstACI GRCGYC 1 cut(s) 545
BstDEI CTNAG 4 cut(s) 197, 404, 412, 564
BstF5I GGATG 4 cut(s) 40, 127, 451, 557
BstKTI GATC 3 cut(s) 304, 313, 410
BstMAI GTCTC 2 cut(s) 144, 467
BstMBI GATC 3 cut(s) 301, 310, 407
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 230, 233
BstX2I RGATCY 2 cut(s) 301, 407
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 2 cut(s) 301, 407
Bsu36I CCTNAGG 1 cut(s) 412
BtsCI GGATG 4 cut(s) 40, 127, 451, 557
CviJI RGCY 6 cut(s) 41, 188, 224, 246, 267, 273
CviKI_1 RGCY 6 cut(s) 41, 188, 224, 246, 267, 273
DdeI CTNAG 4 cut(s) 197, 404, 412, 564
DpnI GATC 3 cut(s) 303, 312, 409
DpnII GATC 3 cut(s) 301, 310, 407
Eam1104I CTCTTC 3 cut(s) 145, 429, 435
EarI CTCTTC 3 cut(s) 145, 429, 435
EciI GGCGGA 1 cut(s) 519
Ecl136II GAGCTC 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 210
Eco81I CCTNAGG 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 275
FaiI YATR 5 cut(s) 47, 106, 179, 426, 574
FaqI GGGAC 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 219, 222
FokI GGATG 4 cut(s) 47, 134, 458, 544
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 219, 222
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 219, 222
GsuI CTGGAG 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 545
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 4 cut(s) 210, 280, 390, 472
Hpy188III TCNNGA 3 cut(s) 314, 330, 489
Hpy99I CGWCG 2 cut(s) 383, 550
HpyAV CCTTC 3 cut(s) 317, 385, 391
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 2 cut(s) 349, 545
HpyCH4V TGCA 4 cut(s) 181, 218, 455, 524
HpyF3I CTNAG 4 cut(s) 197, 404, 412, 564
HpySE526I ACGT 2 cut(s) 349, 545
Hsp92I GRCGYC 1 cut(s) 545
Kzo9I GATC 3 cut(s) 301, 310, 407
LguI GCTCTTC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 9 cut(s) 84, 233, 240, 244, 253, 260, 315, 399, 525
Lsp1109I GCAGC 2 cut(s) 230, 233
LweI GCATC 2 cut(s) 205, 511
MaeI CTAG 1 cut(s) 144
MaeII ACGT 2 cut(s) 349, 545
MalI GATC 3 cut(s) 303, 312, 409
MboI GATC 3 cut(s) 301, 310, 407
MflI RGATCY 2 cut(s) 301, 407
MhlI GDGCHC 1 cut(s) 275
MnlI CCTC 6 cut(s) 9, 140, 192, 421, 430, 436
MseI TTAA 1 cut(s) 569
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
NdeII GATC 3 cut(s) 301, 310, 407
PciSI GCTCTTC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 547
PkrI GCNGC 2 cut(s) 220, 223
Psp124BI GAGCTC 1 cut(s) 275
Psp1406I AACGTT 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PsrI GAACNNNNNNTAC 2 cut(s) 235, 267
PsuI RGATCY 2 cut(s) 301, 407
PsyI GACNNNGTC 1 cut(s) 547
SacI GAGCTC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 2 cut(s) 219, 222
Sau3AI GATC 3 cut(s) 301, 310, 407
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 2 cut(s) 205, 511
SsiI CCGC 1 cut(s) 504
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 2 cut(s) 352, 548
TaqI TCGA 1 cut(s) 62
TaqII GACCGA 1 cut(s) 20
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TseI GCWGC 2 cut(s) 218, 221
TspDTI ATGAA 7 cut(s) 51, 177, 297, 333, 360, 441, 546
Tth111I GACNNNGTC 1 cut(s) 547
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XspI CTAG 1 cut(s) 144
ZraI GACGTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.