FvH4_7g29250

Protein phosphatase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008626
Physical Location & Seq
Reverse (-)
21576970 .. 21579189
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29250.t3

Sequence Viewer

Length: 516 bp
ATGAGTAACCGAGGAAGAGTTAGATGGGATGAGGCTAATCTGGGAGAAATTGAAGCTAATAAACCTGAAAGGCAGAAAATTACTGAGCCGAAGACGCCGTATCACCCCATGCAAACTGATGATGAAGATGATGAGGGATCTATGTCTCCTATACGGGGGAGTCGGTTTGATGAATGTGTCGGTGACGCAATGCATGCAGAAGCGATAAGAACTGCTTTGACTGATGTGGCATCATCAAGTAAAAAGAAGACAACAAGAGTTACTGGCTGGACATCATCTGAGGATGAGGGAGATGCTATGGATCAAGATGATGAAGATTCAGACAAAAGTAGCAGGAATTTCAGGGAGCTCAGAAGAGCTCACTATGATGAATTTCAGAAAGTAAAAGAACTCAGACGGAAAGGTTCCCTTCCTCTTGAAGAAGAAGAAGAAGACGATGAGGATGTTGAGATGAACAAAGTAAAGAGCTCTGATACCCCTTTGTCTCCAGGTGAAGCCAAACCTAATGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IPP-2

Protein Analysis

172

Amino Acids

19.35

Weight (kDa)

4.64

Isoelectric Point (pI)

68.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPP-2 PF04979 41 - 176 2.1e-22 Protein phosphatase inhibitor 2 (IPP-2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 145, 309
AcsI RAATTY 2 cut(s) 337, 371
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 53, 419
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 5 cut(s) 56, 349, 359, 468, 512
AluI AGCT 5 cut(s) 56, 349, 359, 468, 512
Alw21I GWGCWC 3 cut(s) 351, 361, 470
Alw26I GTCTC 2 cut(s) 150, 489
AlwI GGATC 2 cut(s) 145, 309
ApoI RAATTY 2 cut(s) 337, 371
AsuHPI GGTGA 3 cut(s) 95, 194, 503
BanII GRGCYC 3 cut(s) 351, 361, 470
BbsI GAAGAC 3 cut(s) 98, 254, 438
Bbv12I GWGCWC 3 cut(s) 351, 361, 470
BccI CCATC 1 cut(s) 18
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 150, 489
Bme1390I CCNGG 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 239, 283
BpiI GAAGAC 3 cut(s) 98, 254, 438
BpmI CTGGAG 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 3 cut(s) 34, 289, 448
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 4 cut(s) 75, 270, 364, 406
BseNI ACTGG 1 cut(s) 268
BsiHKAI GWGCWC 3 cut(s) 351, 361, 470
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 150, 489
Bsp1286I GDGCHC 3 cut(s) 351, 361, 470
Bsp143I GATC 2 cut(s) 137, 301
BspCNI CTCAG 4 cut(s) 76, 271, 363, 405
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 2 cut(s) 145, 309
BspQI GCTCTTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 137, 301
BssNI GRCGYC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 489
Bst6I CTCTTC 2 cut(s) 10, 349
BstACI GRCGYC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 5 cut(s) 84, 279, 350, 392, 513
BstF5I GGATG 3 cut(s) 34, 289, 448
BstKTI GATC 2 cut(s) 140, 304
BstMAI GTCTC 2 cut(s) 150, 489
BstMBI GATC 2 cut(s) 137, 301
BstMWI GCNNNNNNNGC 2 cut(s) 94, 194
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 487
BstV2I GAAGAC 3 cut(s) 98, 254, 438
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BtsCI GGATG 3 cut(s) 34, 289, 448
Cac8I GCNNGC 1 cut(s) 195
CseI GACGC 2 cut(s) 103, 194
CviAII CATG 2 cut(s) 109, 194
CviJI RGCY 9 cut(s) 35, 56, 88, 267, 349, 359, 468, 497, 512
CviKI_1 RGCY 9 cut(s) 35, 56, 88, 267, 349, 359, 468, 497, 512
DdeI CTNAG 5 cut(s) 84, 279, 350, 392, 513
DpnI GATC 2 cut(s) 139, 303
DpnII GATC 2 cut(s) 137, 301
Eam1104I CTCTTC 2 cut(s) 10, 349
EarI CTCTTC 2 cut(s) 10, 349
Ecl136II GAGCTC 3 cut(s) 349, 359, 468
Eco24I GRGCYC 3 cut(s) 351, 361, 470
Eco53kI GAGCTC 3 cut(s) 349, 359, 468
EcoICRI GAGCTC 3 cut(s) 349, 359, 468
EcoRII CCWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 195
EcoT38I GRGCYC 3 cut(s) 351, 361, 470
FaeI CATG 2 cut(s) 112, 197
FaiI YATR 6 cut(s) 110, 143, 152, 195, 299, 366
FalI AAGNNNNNCTT 4 cut(s) 199, 231, 393, 425
FatI CATG 2 cut(s) 108, 193
FokI GGATG 3 cut(s) 41, 296, 455
FriOI GRGCYC 3 cut(s) 351, 361, 470
GsuI CTGGAG 1 cut(s) 471
HgaI GACGC 2 cut(s) 103, 194
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 112, 197
HinfI GANTC 2 cut(s) 160, 317
HphI GGTGA 3 cut(s) 95, 194, 503
Hpy188I TCNGA 6 cut(s) 280, 322, 353, 378, 395, 472
Hpy188III TCNNGA 2 cut(s) 305, 416
HpyAV CCTTC 1 cut(s) 419
HpyCH4V TGCA 3 cut(s) 112, 193, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 194
HpyF3I CTNAG 5 cut(s) 84, 279, 350, 392, 513
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 112, 197
Kzo9I GATC 2 cut(s) 137, 301
LguI GCTCTTC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 346, 509
LpnPI CCDG 8 cut(s) 26, 78, 249, 253, 319, 328, 474, 501
LweI GCATC 2 cut(s) 239, 283
MaeIII GTNAC 3 cut(s) 5, 182, 259
MalI GATC 2 cut(s) 139, 303
MboI GATC 2 cut(s) 137, 301
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 3 cut(s) 351, 361, 470
MluCI AATT 4 cut(s) 48, 78, 337, 371
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 7 cut(s) 5, 25, 127, 274, 280, 423, 433
Mph1103I ATGCAT 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 2 cut(s) 94, 194
NdeII GATC 2 cut(s) 137, 301
NlaIII CATG 2 cut(s) 112, 197
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 195
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 317
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp124BI GAGCTC 3 cut(s) 351, 361, 470
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 406
PsuI RGATCY 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 366
SacI GAGCTC 3 cut(s) 351, 361, 470
SapI GCTCTTC 1 cut(s) 349
Sau3AI GATC 2 cut(s) 137, 301
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 3 cut(s) 351, 361, 470
SetI ASST 9 cut(s) 58, 67, 351, 361, 406, 470, 493, 505, 514
SfaNI GCATC 2 cut(s) 239, 283
SmiMI CAYNNNNRTG 1 cut(s) 366
SphI GCATGC 1 cut(s) 197
Sse9I AATT 4 cut(s) 48, 78, 337, 371
SstI GAGCTC 3 cut(s) 351, 361, 470
StyD4I CCNGG 1 cut(s) 487
TasI AATT 4 cut(s) 48, 78, 337, 371
TfiI GAWTC 1 cut(s) 317
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 5 cut(s) 138, 186, 327, 384, 467
TspGWI ACGGA 1 cut(s) 412
XapI RAATTY 2 cut(s) 337, 371
XceI RCATGY 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.