Rw1G036650

Protein phosphatase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008626
Physical Location & Seq
Reverse (-)
64541187 .. 64543521
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036650.1

Sequence Viewer

Length: 510 bp
ATGAGTAACCGAGGCCGAGTTAGATGGGATGAGGAGAATCTGGGAGAAATTGAAGCAAATAAACCTGTAAGGCAGAAAATTACTGAGCCGAAGACGCCGTATCACCCCATGCAAACTGATGATGAAGATGATGAGGGATCTCTGTCTCCTATACGGCGGAGTCGGTTTGATGAATGTATTGGTGATGCAGTGCATGCAGAAGCGATACGATCTGCTTTGAGTGATGTGGCATCATCAAGTACAAAGAAGACCACGAGATCTACTGGCTGGACATCATCCGAGGATGAAGCTGATGCTATGGATCAAGATGGTGAAGATTCAGACAAAAGTGGCAGAAGTTTCAGGGAGCATAGAAAAGCTCATTATGATGAATTCCAGAAAGTAAAAGAACTCAGACGGAAAGGTTCCCTTCTCGATGATGAAGATGAGGACGAGGATGTTGAGATGAACAAGGTAAAGAGATCCGATCCCCCTTCATCTTCAGGTGCAGCCAACCCTAATGGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IPP-2

Protein Analysis

169

Amino Acids

18.99

Weight (kDa)

4.79

Isoelectric Point (pI)

72.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPP-2 PF04979 7 - 143 9.1e-25 Protein phosphatase inhibitor 2 (IPP-2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclWI GGATC 4 cut(s) 145, 309, 456, 461
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 2 cut(s) 290, 359
AluI AGCT 2 cut(s) 290, 359
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 4 cut(s) 145, 309, 456, 461
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 95, 194, 323
BauI CACGAG 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 98, 254
BbvI GCAGC 1 cut(s) 500
BccI CCATC 2 cut(s) 18, 302
BceAI ACGGC 2 cut(s) 82, 170
BcoDI GTCTC 1 cut(s) 150
BglII AGATCT 1 cut(s) 257
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 406
BmsI GCATC 3 cut(s) 175, 239, 283
BpiI GAAGAC 2 cut(s) 98, 254
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 10, 279
Bse1I ACTGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 10, 279
BseGI GGATG 4 cut(s) 34, 275, 289, 442
BseMII CTCAG 2 cut(s) 75, 406
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 7 cut(s) 137, 209, 257, 301, 461, 466, 503
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 76, 405
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 4 cut(s) 145, 309, 456, 461
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 10, 279
BssMI GATC 7 cut(s) 137, 209, 257, 301, 461, 466, 503
BssNI GRCGYC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 253
BstACI GRCGYC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 84, 392, 507
BstF5I GGATG 4 cut(s) 34, 275, 289, 442
BstKTI GATC 7 cut(s) 140, 212, 260, 304, 464, 469, 506
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 7 cut(s) 137, 209, 257, 301, 461, 466, 503
BstMWI GCNNNNNNNGC 2 cut(s) 94, 194
BstNSI RCATGY 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 500
BstV2I GAAGAC 2 cut(s) 98, 254
BstX2I RGATCY 4 cut(s) 137, 257, 461, 503
BstYI RGATCY 4 cut(s) 137, 257, 461, 503
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 4 cut(s) 34, 275, 289, 442
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 195
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 240
CviAII CATG 2 cut(s) 109, 194
CviJI RGCY 6 cut(s) 15, 88, 267, 290, 359, 491
CviKI_1 RGCY 6 cut(s) 15, 88, 267, 290, 359, 491
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 3 cut(s) 84, 392, 507
DpnI GATC 7 cut(s) 139, 211, 259, 303, 463, 468, 505
DpnII GATC 7 cut(s) 137, 209, 257, 301, 461, 466, 503
EciI GGCGGA 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 371
FaeI CATG 2 cut(s) 112, 197
FaiI YATR 6 cut(s) 110, 152, 195, 299, 351, 366
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 2 cut(s) 108, 193
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 4 cut(s) 41, 262, 296, 449
Fsp4HI GCNGC 1 cut(s) 489
GluI GCNGC 1 cut(s) 489
HaeIII GGCC 1 cut(s) 15
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 112, 197
HinfI GANTC 3 cut(s) 37, 160, 317
HphI GGTGA 3 cut(s) 95, 194, 323
Hpy188I TCNGA 4 cut(s) 280, 322, 395, 466
Hpy188III TCNNGA 3 cut(s) 305, 376, 413
HpyAV CCTTC 2 cut(s) 419, 483
HpyCH4V TGCA 5 cut(s) 112, 188, 193, 197, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 194
HpyF3I CTNAG 3 cut(s) 84, 392, 507
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 112, 197
Kzo9I GATC 7 cut(s) 137, 209, 257, 301, 461, 466, 503
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 7 cut(s) 26, 78, 249, 253, 328, 389, 468
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 3 cut(s) 175, 239, 283
MaeIII GTNAC 1 cut(s) 5
MalI GATC 7 cut(s) 139, 211, 259, 303, 463, 468, 505
MboI GATC 7 cut(s) 137, 209, 257, 301, 461, 466, 503
MboII GAAGA 6 cut(s) 103, 137, 259, 326, 434, 471
MflI RGATCY 4 cut(s) 137, 257, 461, 503
MluCI AATT 3 cut(s) 48, 78, 371
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 6 cut(s) 5, 25, 127, 274, 421, 427
MslI CAYNNNNRTG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 94, 194
NdeII GATC 7 cut(s) 137, 209, 257, 301, 461, 466, 503
NlaIII CATG 2 cut(s) 112, 197
NlaIV GGNNCC 1 cut(s) 406
NmeAIII GCCGAG 1 cut(s) 41
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 37, 317
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 406
PsuI RGATCY 4 cut(s) 137, 257, 461, 503
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 366
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 7 cut(s) 137, 209, 257, 301, 461, 466, 503
SchI GAGTC 1 cut(s) 169
SetI ASST 6 cut(s) 67, 292, 361, 406, 456, 487
SfaNI GCATC 3 cut(s) 175, 239, 283
SmiMI CAYNNNNRTG 1 cut(s) 366
SphI GCATGC 1 cut(s) 197
Sse9I AATT 3 cut(s) 48, 78, 371
SsiI CCGC 1 cut(s) 157
TaqI TCGA 1 cut(s) 414
TasI AATT 3 cut(s) 48, 78, 371
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 2 cut(s) 37, 317
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 488
TspDTI ATGAA 7 cut(s) 138, 186, 300, 384, 435, 461, 465
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 195
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.