Rh1BG376900

Protein phosphatase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008626
Physical Location & Seq
Reverse (-)
50694155 .. 50696685
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG376900.1

Sequence Viewer

Length: 402 bp
ATGCAAACTGATGATGAAGATGATGAGGGATCTCTGTCTCCTATACGGCGGAGTCGGTTTGATGAATGTATTGGTGACGCAGTGCATGCAGAAGCGATACGATCTGCTTTGAGTGATGTGGCATCATCAAGTACAAAGAAGACCTCGAGATCTACTGGCTGGACATCATCCGAGGATGAAGCTGATGCTATGGATCAAGATGGTGAAGATTCAGACAAAAGTGGCAGAAGTTTCAGGGAGCATAGAAAAGCTCATTATGATGAATTCCAGAAAGTAAAAGAACTCAGACGGAAAGGTTCCCTTCTCGATGATGAAGATGAGGACGAGGATGTTGAGATGAACAAGGTAAAGAGATCCGATCCCCCTTCATCTTCAGGTGCAGCCAACCCTAATGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IPP-2

Protein Analysis

133

Amino Acids

14.7

Weight (kDa)

4.55

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPP-2 PF04979 6 - 107 6.4e-11 Protein phosphatase inhibitor 2 (IPP-2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 49
AclWI GGATC 4 cut(s) 37, 201, 348, 353
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 1 cut(s) 133
AluBI AGCT 3 cut(s) 182, 251, 398
AluI AGCT 3 cut(s) 182, 251, 398
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 4 cut(s) 37, 201, 348, 353
Ama87I CYCGRG 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 86, 215
AvaI CYCGRG 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 392
BccI CCATC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 42
BglII AGATCT 1 cut(s) 149
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 2 cut(s) 131, 175
BpiI GAAGAC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 3 cut(s) 167, 181, 334
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 145
Bsp143I GATC 6 cut(s) 29, 101, 149, 193, 353, 358
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 4 cut(s) 37, 201, 348, 353
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 6 cut(s) 29, 101, 149, 193, 353, 358
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 284, 399
BstF5I GGATG 3 cut(s) 167, 181, 334
BstKTI GATC 6 cut(s) 32, 104, 152, 196, 356, 361
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 6 cut(s) 29, 101, 149, 193, 353, 358
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 3 cut(s) 29, 149, 353
BstYI RGATCY 3 cut(s) 29, 149, 353
BtsCI GGATG 3 cut(s) 167, 181, 334
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 87
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 86
CviJI RGCY 5 cut(s) 159, 182, 251, 383, 398
CviKI_1 RGCY 5 cut(s) 159, 182, 251, 383, 398
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 2 cut(s) 284, 399
DpnI GATC 6 cut(s) 31, 103, 151, 195, 355, 360
DpnII GATC 6 cut(s) 29, 101, 149, 193, 353, 358
EciI GGCGGA 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 263
FaeI CATG 1 cut(s) 89
FaiI YATR 5 cut(s) 44, 87, 191, 243, 258
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 3 cut(s) 154, 188, 341
Fsp4HI GCNGC 1 cut(s) 381
GluI GCNGC 1 cut(s) 381
HgaI GACGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 89
HinfI GANTC 2 cut(s) 52, 209
HphI GGTGA 2 cut(s) 86, 215
Hpy188I TCNGA 4 cut(s) 172, 214, 287, 358
Hpy188III TCNNGA 4 cut(s) 147, 197, 268, 305
HpyAV CCTTC 2 cut(s) 311, 375
HpyCH4V TGCA 4 cut(s) 4, 85, 89, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 284, 399
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 6 cut(s) 29, 101, 149, 193, 353, 358
LmnI GCTCC 2 cut(s) 238, 395
LpnPI CCDG 5 cut(s) 141, 145, 220, 281, 360
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 2 cut(s) 131, 175
MaeIII GTNAC 1 cut(s) 74
MalI GATC 6 cut(s) 31, 103, 151, 195, 355, 360
MboI GATC 6 cut(s) 29, 101, 149, 193, 353, 358
MboII GAAGA 5 cut(s) 29, 151, 218, 326, 363
MflI RGATCY 3 cut(s) 29, 149, 353
MluCI AATT 1 cut(s) 263
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 5 cut(s) 19, 154, 166, 313, 319
MslI CAYNNNNRTG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 6 cut(s) 29, 101, 149, 193, 353, 358
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 89
PaeI GCATGC 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 145
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 3 cut(s) 29, 149, 353
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 258
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 6 cut(s) 29, 101, 149, 193, 353, 358
SchI GAGTC 1 cut(s) 61
SetI ASST 7 cut(s) 146, 184, 253, 298, 348, 379, 400
SfaNI GCATC 2 cut(s) 131, 175
Sfr274I CTCGAG 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SphI GCATGC 1 cut(s) 89
Sse9I AATT 1 cut(s) 263
SsiI CCGC 1 cut(s) 49
TaqI TCGA 2 cut(s) 146, 306
TasI AATT 1 cut(s) 263
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 7 cut(s) 30, 78, 192, 276, 327, 353, 357
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 1 cut(s) 87
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.