Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000155.1

Orthogroup ID

OG0008626

Physical Location & Seq

Genomic Coordinates Forward (+)

114350 .. 115997

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000155.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgagtaaccgaggccgagttagatgggatgaggagaatctgggagaaattgaagcaaataaacctgtaaggcagaaaattactgagccgaagacgccgtatcaccccatgcaaactgatgatgaagatgatgagggatctctgtctcctatacggcggagtcggtttgatgaatgtattggtgacgcagtgcatgcagaagcgatacgatctgctctgagtgatgtggcatcatcaagtacaaagaagaccacgagatctactggctggacatcatccgaggatgaagctgatgctatggatcaagatgattcagacaaaagtggcagaagtttcagggagcatagaaaagctcattatgatgaattccagaaagtaaaagaactcagacggaaaggttcccttctcgatgatgaagatgaggacgaggatgttgagatgaacaaggtaaagagatccgatcccccttcatcttcaggtgcagccaaccctaatggagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IPP-2

Protein Analysis

167

Amino Acids

18.79

Weight (kDa)

4.83

Isoelectric Point (pI)

71.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52200 AT5G52200 AT5G52200
fragaria_vesca	FvH4_7g29250 FvH4_7g29250 FvH4_7g29250
malus_domestica	MD01G1199100.v1.1 MD07G1266900.v1.1
prunus_persica	Prupe.2G292500_v2.0.a1 Prupe.2G292500_v2.0.a1 Prupe.2G292500_v2.0.a1
pyrus_communis	pycom01g20900
rosa_chinensis	RchiOBHm_Chr1g0377001
rosa_laevigata	RLG00000026552
rosa_multiflora	Rmu_ssc0000155.1_g000030
rosa_roxburghii	Rroxscaffold_4G00281560
rosa_rugosa	Rorug01G0400500 Rorug01G0400600
rosa_samantha	Rh1AG417500 Rh1BG376900 Rh1CG390700 Rh1DG407700
rosa_wichuraiana	Rw1G036650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	4 cut(s)	145, 309, 450, 455
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	3 cut(s)	290, 353, 500
AluI	AGCT	3 cut(s)	290, 353, 500
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	4 cut(s)	145, 309, 450, 455
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	95, 194
BauI	CACGAG	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	98, 254
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	1 cut(s)	18
BceAI	ACGGC	2 cut(s)	82, 170
BcoDI	GTCTC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	400
BmsI	GCATC	2 cut(s)	239, 283
BpiI	GAAGAC	2 cut(s)	98, 254
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	10, 279
Bse1I	ACTGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	10, 279
BseGI	GGATG	4 cut(s)	34, 275, 289, 436
BseMII	CTCAG	3 cut(s)	75, 209, 400
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	15
Bsp143I	GATC	6 cut(s)	137, 209, 257, 301, 455, 460
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	3 cut(s)	76, 210, 399
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	4 cut(s)	145, 309, 450, 455
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	10, 279
BssMI	GATC	6 cut(s)	137, 209, 257, 301, 455, 460
BssNI	GRCGYC	1 cut(s)	95
BssSI	CACGAG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	84, 218, 386, 501
BstF5I	GGATG	4 cut(s)	34, 275, 289, 436
BstKTI	GATC	6 cut(s)	140, 212, 260, 304, 458, 463
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	6 cut(s)	137, 209, 257, 301, 455, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 194
BstNSI	RCATGY	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	2 cut(s)	98, 254
BstX2I	RGATCY	3 cut(s)	137, 257, 455
BstYI	RGATCY	3 cut(s)	137, 257, 455
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	4 cut(s)	34, 275, 289, 436
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	195
CseI	GACGC	2 cut(s)	103, 194
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	2 cut(s)	109, 194
CviJI	RGCY	7 cut(s)	15, 88, 267, 290, 353, 485, 500
CviKI_1	RGCY	7 cut(s)	15, 88, 267, 290, 353, 485, 500
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	4 cut(s)	84, 218, 386, 501
DpnI	GATC	6 cut(s)	139, 211, 259, 303, 457, 462
DpnII	GATC	6 cut(s)	137, 209, 257, 301, 455, 460
EciI	GGCGGA	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	365
FaeI	CATG	2 cut(s)	112, 197
FaiI	YATR	6 cut(s)	110, 152, 195, 299, 345, 360
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	2 cut(s)	108, 193
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	4 cut(s)	41, 262, 296, 443
Fsp4HI	GCNGC	1 cut(s)	483
GluI	GCNGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	15
HgaI	GACGC	2 cut(s)	103, 194
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	112, 197
HinfI	GANTC	3 cut(s)	37, 160, 311
HphI	GGTGA	2 cut(s)	95, 194
Hpy188I	TCNGA	5 cut(s)	219, 280, 316, 389, 460
Hpy188III	TCNNGA	3 cut(s)	305, 370, 407
HpyAV	CCTTC	2 cut(s)	413, 477
HpyCH4V	TGCA	4 cut(s)	112, 193, 197, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 194
HpyF3I	CTNAG	4 cut(s)	84, 218, 386, 501
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	112, 197
Kzo9I	GATC	6 cut(s)	137, 209, 257, 301, 455, 460
LmnI	GCTCC	2 cut(s)	340, 497
LpnPI	CCDG	7 cut(s)	26, 78, 249, 253, 322, 383, 462
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	2 cut(s)	239, 283
MaeIII	GTNAC	2 cut(s)	5, 182
MalI	GATC	6 cut(s)	139, 211, 259, 303, 457, 462
MboI	GATC	6 cut(s)	137, 209, 257, 301, 455, 460
MboII	GAAGA	5 cut(s)	103, 137, 259, 428, 465
MflI	RGATCY	3 cut(s)	137, 257, 455
MluCI	AATT	3 cut(s)	48, 78, 365
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	6 cut(s)	5, 25, 127, 274, 415, 421
MslI	CAYNNNNRTG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	94, 194
NdeII	GATC	6 cut(s)	137, 209, 257, 301, 455, 460
NlaIII	CATG	2 cut(s)	112, 197
NlaIV	GGNNCC	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	37, 311
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	137, 257, 455
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	360
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	6 cut(s)	137, 209, 257, 301, 455, 460
SchI	GAGTC	1 cut(s)	169
SetI	ASST	7 cut(s)	67, 292, 355, 400, 450, 481, 502
SfaNI	GCATC	2 cut(s)	239, 283
SmiMI	CAYNNNNRTG	1 cut(s)	360
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	3 cut(s)	48, 78, 365
SsiI	CCGC	1 cut(s)	157
TaqI	TCGA	1 cut(s)	408
TasI	AATT	3 cut(s)	48, 78, 365
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	37, 311
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	7 cut(s)	138, 186, 300, 378, 429, 455, 459
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.