Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008626

Physical Location & Seq

Genomic Coordinates Reverse (-)

28542657 .. 28544411

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G292500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATGGCAGGGGCCGAGTTAGATGGGATGAGGCTAATCTGGGAGAAATCGAAGCAAATAAACCTGTAAGGCAGAAAATTACTGAGCCGAAGACGCCATACCACCCTATGATGACCGATGATGAGGATGGATCTCTGTCTCCTATACGGGGTAGCTTCAATGATTGTGTTGGTGATGCAGTTCATGCAGAAGCAATACGAACTGCTTTGACCGATGTGGCATCATCAAGTAGAAAGAACACCCCAAGATCTACTGGCTGGACATCATCTGAGGATGAGGCAGATGCTATGGAACAAGATGATGAAGATTCTGAGACAGATAAAAATGGTAGGAGTTTTAGGGAGCACAGAAGAGCTCATTATGATGAATTCCAGAAAGTAAAAGAACTCAGGCGAAAAGGCTCCTTTCTCGATGATGAAGATGAGGATGAGGATGTTGCGATGGGTAAGGAGAAGAGATCCGGTTCCTCGTTAACTGCTGGTGTGAAGGAAATAGATATCGACGAATATGCTACTGCCTCTTCGACTAAAAAAACTTCCGGACCTCCAGCTAATGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IPP-2

Protein Analysis

188

Amino Acids

20.71

Weight (kDa)

4.81

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52200 AT5G52200 AT5G52200
fragaria_vesca	FvH4_7g29250 FvH4_7g29250 FvH4_7g29250
malus_domestica	MD01G1199100.v1.1 MD07G1266900.v1.1
prunus_persica	Prupe.2G292500_v2.0.a1 Prupe.2G292500_v2.0.a1 Prupe.2G292500_v2.0.a1
pyrus_communis	pycom01g20900
rosa_chinensis	RchiOBHm_Chr1g0377001
rosa_laevigata	RLG00000026552
rosa_multiflora	Rmu_ssc0000155.1_g000030
rosa_roxburghii	Rroxscaffold_4G00281560
rosa_rugosa	Rorug01G0400500 Rorug01G0400600
rosa_samantha	Rh1AG417500 Rh1BG376900 Rh1CG390700 Rh1DG407700
rosa_wichuraiana	Rw1G036650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccIII	TCCGGA	1 cut(s)	539
AclWI	GGATC	2 cut(s)	139, 453
AcsI	RAATTY	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	149, 554
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	4 cut(s)	156, 356, 551, 560
AluI	AGCT	4 cut(s)	156, 356, 551, 560
Alw21I	GWGCWC	2 cut(s)	348, 358
Alw26I	GTCTC	2 cut(s)	144, 308
AlwI	GGATC	2 cut(s)	139, 453
Aor13HI	TCCGGA	1 cut(s)	539
AoxI	GGCC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	13, 542
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	358
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	348, 358
BccI	CCATC	3 cut(s)	18, 122, 436
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BcoDI	GTCTC	2 cut(s)	144, 308
BglII	AGATCT	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	13, 542
BmiI	GGNNCC	3 cut(s)	14, 403, 466
BmsI	GCATC	3 cut(s)	166, 230, 274
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	95
BsaWI	WCCGGW	2 cut(s)	461, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 554
Bse1I	ACTGG	1 cut(s)	259
BseAI	TCCGGA	1 cut(s)	539
BseGI	GGATG	5 cut(s)	34, 133, 280, 433, 439
BseLI	CCNNNNNNNGG	2 cut(s)	149, 554
BseMII	CTCAG	4 cut(s)	75, 261, 303, 403
BseNI	ACTGG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	348, 358
BsiSI	CCGG	2 cut(s)	462, 540
BslI	CCNNNNNNNGG	2 cut(s)	149, 554
BsmAI	GTCTC	2 cut(s)	144, 308
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	348, 358
Bsp13I	TCCGGA	1 cut(s)	539
Bsp143I	GATC	3 cut(s)	131, 248, 458
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	4 cut(s)	76, 262, 304, 402
BspEI	TCCGGA	1 cut(s)	539
BspLI	GGNNCC	3 cut(s)	14, 403, 466
BspPI	GGATC	2 cut(s)	139, 453
BspQI	GCTCTTC	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	131, 248, 458
BssNI	GRCGYC	1 cut(s)	95
Bst6I	CTCTTC	3 cut(s)	346, 449, 526
BstACI	GRCGYC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstDEI	CTNAG	5 cut(s)	84, 270, 312, 389, 561
BstF5I	GGATG	5 cut(s)	34, 133, 280, 433, 439
BstKTI	GATC	3 cut(s)	134, 251, 461
BstMAI	GTCTC	2 cut(s)	144, 308
BstMBI	GATC	3 cut(s)	131, 248, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 185, 557
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	3 cut(s)	131, 248, 458
BstYI	RGATCY	3 cut(s)	131, 248, 458
BsuRI	GGCC	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	455
BtsCI	GGATG	5 cut(s)	34, 133, 280, 433, 439
Cfr13I	GGNCC	2 cut(s)	13, 542
CseI	GACGC	1 cut(s)	103
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	9 cut(s)	15, 35, 88, 156, 258, 356, 402, 551, 560
CviKI_1	RGCY	9 cut(s)	15, 35, 88, 156, 258, 356, 402, 551, 560
DdeI	CTNAG	5 cut(s)	84, 270, 312, 389, 561
DpnI	GATC	3 cut(s)	133, 250, 460
DpnII	GATC	3 cut(s)	131, 248, 458
Eam1104I	CTCTTC	3 cut(s)	346, 449, 526
EarI	CTCTTC	3 cut(s)	346, 449, 526
Ecl136II	GAGCTC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	358
FaeI	CATG	1 cut(s)	188
FaiI	YATR	7 cut(s)	100, 110, 146, 186, 290, 363, 510
FatI	CATG	1 cut(s)	184
FokI	GGATG	5 cut(s)	41, 140, 287, 440, 446
FriOI	GRGCYC	1 cut(s)	358
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	462, 540
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	1 cut(s)	308
HpaI	GTTAAC	1 cut(s)	474
HpaII	CCGG	2 cut(s)	462, 540
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	2 cut(s)	271, 313
Hpy188III	TCNNGA	3 cut(s)	373, 410, 540
Hpy8I	GTNNAC	1 cut(s)	474
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	481
HpyCH4V	TGCA	2 cut(s)	179, 188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 185, 557
HpyF3I	CTNAG	5 cut(s)	84, 270, 312, 389, 561
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	188
Kpn2I	TCCGGA	1 cut(s)	539
KspAI	GTTAAC	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	131, 248, 458
LguI	GCTCTTC	1 cut(s)	346
LmnI	GCTCC	3 cut(s)	343, 407, 557
LpnPI	CCDG	9 cut(s)	26, 78, 240, 244, 376, 386, 465, 475, 553
LweI	GCATC	3 cut(s)	166, 230, 274
MalI	GATC	3 cut(s)	133, 250, 460
MboI	GATC	3 cut(s)	131, 248, 458
MboII	GAAGA	6 cut(s)	103, 317, 363, 431, 466, 513
MflI	RGATCY	3 cut(s)	131, 248, 458
MhlI	GDGCHC	2 cut(s)	348, 358
MluCI	AATT	2 cut(s)	78, 368
MnlI	CCTC	9 cut(s)	25, 118, 265, 271, 418, 424, 478, 529, 555
MroI	TCCGGA	1 cut(s)	539
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	462, 540
MwoI	GCNNNNNNNGC	3 cut(s)	94, 185, 557
NdeII	GATC	3 cut(s)	131, 248, 458
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	3 cut(s)	14, 403, 466
NmeAIII	GCCGAG	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	358
PspN4I	GGNNCC	3 cut(s)	14, 403, 466
PspPI	GGNCC	2 cut(s)	13, 542
PsuI	RGATCY	3 cut(s)	131, 248, 458
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	358
SapI	GCTCTTC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	473
Sau3AI	GATC	3 cut(s)	131, 248, 458
Sau96I	GGNCC	2 cut(s)	13, 542
SduI	GDGCHC	2 cut(s)	348, 358
SetI	ASST	6 cut(s)	67, 158, 358, 547, 553, 562
SfaNI	GCATC	3 cut(s)	166, 230, 274
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	78, 368
SstI	GAGCTC	1 cut(s)	358
TaqI	TCGA	4 cut(s)	51, 411, 501, 524
TaqII	GACCGA	2 cut(s)	131, 227
TasI	AATT	2 cut(s)	78, 368
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TspDTI	ATGAA	5 cut(s)	17, 173, 318, 381, 432
Van91I	CCANNNNNTGG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.