Rorug01G0400500

Protein phosphatase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008626
Physical Location & Seq
Reverse (-)
50916158 .. 50917114
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0400500.1

Sequence Viewer

Length: 957 bp
ATGGAGGGCAAGCGAAAAATCCATTGGAGAAGCTGGGAAAAACTTTGCTTACCTAAGCATGAAGGTGGCTTGGGATTCAAGAACATTTATGCCTACAATCTTGCCATGTTAGCCAAGCAAGGGTGGAGGCTCATCACCAGACCTAACTCGCTTATAGCTCAAGTGCTCACGGCTCGGTACTTTCCCCATTGCTCCTTTTGGGATGCCAATTTAGGTGATGCACCGTCTTATTCCTGGAGAAGTATTTTGGAAAGTAGATCATTACTCAAAGCTGGTACTTCGTGGAGAGTTGGGGATGGAACTCAAATTAGTATTTGGCATGATAATTGGGTACCAAATTGTCCTCAATATCTACTTCAGAAACCGGTGCACACTTCCCTTGAGACAGTAGCAGACCTCATTGATCCTACATCTAGAACCTGGATTTCCACCTTGGTTCATACTTTATTTAGCCCTCAGGTGGCTGCCAGTCTTTTGTGCATTCCATTGCGACATCATCCTATTCCTGTTAGAAGATGTTGGACCCCTGAAAAGAGAGGGTTATTTACGGTGAAAAGTGCCTACTGGATCGCTAGGCAGCAGGTGCTCGGAAATACGTTAGCTTCATCCTCGACGGGTGATCCTTTTCTGATGCTATGGAAATGTATTTGGAAGGCCAAGATACCAGGGAAAGTTCAAATATGTTGCTGGAGGGCGGTTAATAACTTGCTACCTACAAGGGAACAACTTTCGAAGAGAGGTTATGATGGAGAAATGGGATGCTTACTCTGCAATTACAGAATGGAGAGCTCAGATCATCTGTTTTGCAAATGTCCTACTGCTACGTCATTACTTTCAGGTACCCCGTTCTTGTTACAGTCCTCTATTCTACCCAACTTGGACTTTAAGGAATGGATGTTAGAACGAGCTCTTACTTTGAAGCCGGAAATTTTTGAGAAGCTTCTTATGATTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IPP-2

Protein Analysis

318

Amino Acids

36.46

Weight (kDa)

9.4

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 182 - 276 9.9e-19 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 571
Acc36I ACCTGC 1 cut(s) 571
Acc65I GGTACC 2 cut(s) 331, 839
AccB1I GGYRCC 2 cut(s) 331, 839
AciI CCGC 1 cut(s) 695
AclWI GGATC 3 cut(s) 398, 575, 614
AcsI RAATTY 1 cut(s) 927
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 4 cut(s) 179, 277, 333, 841
AfiI CCNNNNNNNGG 2 cut(s) 120, 460
AgeI ACCGGT 1 cut(s) 364
AgsI TTSAA 3 cut(s) 79, 677, 919
AjnI CCWGG 3 cut(s) 233, 419, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
AluBI AGCT 7 cut(s) 33, 158, 272, 602, 789, 908, 940
AluI AGCT 7 cut(s) 33, 158, 272, 602, 789, 908, 940
Alw21I GWGCWC 5 cut(s) 168, 372, 588, 791, 910
Alw26I GTCTC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 3 cut(s) 398, 575, 614
AoxI GGCC 1 cut(s) 654
ApaLI GTGCAC 1 cut(s) 368
ApeKI GCWGC 2 cut(s) 464, 577
ApoI RAATTY 1 cut(s) 927
AsiGI ACCGGT 1 cut(s) 364
Asp718I GGTACC 2 cut(s) 331, 839
AspS9I GGNCC 1 cut(s) 522
AsuHPI GGTGA 4 cut(s) 127, 227, 562, 629
AsuII TTCGAA 1 cut(s) 731
AvaII GGWCC 1 cut(s) 522
AxyI CCTNAGG 1 cut(s) 456
BaeGI GKGCMC 1 cut(s) 372
BanI GGYRCC 2 cut(s) 331, 839
BanII GRGCYC 2 cut(s) 791, 910
Bbv12I GWGCWC 5 cut(s) 168, 372, 588, 791, 910
BbvI GCAGC 2 cut(s) 451, 589
BccI CCATC 2 cut(s) 290, 740
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 3 cut(s) 235, 421, 666
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 3 cut(s) 414, 573, 955
BfuAI ACCTGC 1 cut(s) 571
BisI GCNGC 2 cut(s) 465, 578
BlsI GCNGC 2 cut(s) 466, 579
Bme1390I CCNGG 3 cut(s) 235, 421, 666
Bme18I GGWCC 1 cut(s) 522
BmgT120I GGNCC 1 cut(s) 522
BmiI GGNNCC 3 cut(s) 333, 524, 841
BmrFI CCNGG 3 cut(s) 235, 421, 666
BmsI GCATC 4 cut(s) 193, 208, 621, 749
BpmI CTGGAG 2 cut(s) 256, 709
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 731
BpuEI CTTGAG 2 cut(s) 144, 401
BsaJI CCNNGG 2 cut(s) 432, 665
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 460
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 468, 569
Bse21I CCTNAGG 1 cut(s) 456
Bse3DI GCAATG 2 cut(s) 187, 485
BseBI CCWGG 3 cut(s) 235, 421, 666
BseDI CCNNGG 2 cut(s) 432, 665
BseGI GGATG 6 cut(s) 208, 301, 496, 605, 764, 900
BseLI CCNNNNNNNGG 2 cut(s) 120, 460
BseMI GCAATG 2 cut(s) 187, 485
BseMII CTCAG 2 cut(s) 470, 804
BseNI ACTGG 2 cut(s) 468, 569
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 2 cut(s) 451, 589
BseYI CCCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 656
BshNI GGYRCC 2 cut(s) 331, 839
BshTI ACCGGT 1 cut(s) 364
BsiHKAI GWGCWC 5 cut(s) 168, 372, 588, 791, 910
BsiSI CCGG 2 cut(s) 365, 923
BslI CCNNNNNNNGG 2 cut(s) 120, 460
BsmAI GTCTC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 1 cut(s) 656
Bsp119I TTCGAA 1 cut(s) 731
Bsp1286I GDGCHC 5 cut(s) 168, 372, 588, 791, 910
Bsp143I GATC 5 cut(s) 257, 403, 567, 619, 793
BspACI CCGC 1 cut(s) 695
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 2 cut(s) 469, 803
BspLI GGNNCC 3 cut(s) 333, 524, 841
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 3 cut(s) 398, 575, 614
BspT104I TTCGAA 1 cut(s) 731
BspT107I GGYRCC 2 cut(s) 331, 839
BsrDI GCAATG 2 cut(s) 187, 485
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 2 cut(s) 468, 569
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 432, 665
BssMI GATC 5 cut(s) 257, 403, 567, 619, 793
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 235, 421, 666
Bst4CI ACNGT 4 cut(s) 225, 388, 550, 858
Bst6I CTCTTC 1 cut(s) 728
BstAPI GCANNNNNTGC 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 731
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 54, 456, 790
BstF5I GGATG 6 cut(s) 208, 301, 496, 605, 764, 900
BstKTI GATC 5 cut(s) 260, 406, 570, 622, 796
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 5 cut(s) 257, 403, 567, 619, 793
BstMWI GCNNNNNNNGC 3 cut(s) 110, 583, 768
BstNI CCWGG 3 cut(s) 235, 421, 666
BstSCI CCNGG 3 cut(s) 233, 419, 664
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 451, 589
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 1 cut(s) 656
BtsCI GGATG 6 cut(s) 208, 301, 496, 605, 764, 900
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 522
Csp6I GTAC 4 cut(s) 178, 276, 332, 840
CspAI ACCGGT 1 cut(s) 364
CviAII CATG 3 cut(s) 59, 106, 320
CviQI GTAC 4 cut(s) 178, 276, 332, 840
DdeI CTNAG 3 cut(s) 54, 456, 790
DpnI GATC 5 cut(s) 259, 405, 569, 621, 795
DpnII GATC 5 cut(s) 257, 403, 567, 619, 793
Eam1104I CTCTTC 1 cut(s) 728
EarI CTCTTC 1 cut(s) 728
Ecl136II GAGCTC 2 cut(s) 789, 908
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 2 cut(s) 791, 910
Eco47I GGWCC 1 cut(s) 522
Eco53kI GAGCTC 2 cut(s) 789, 908
Eco57I CTGAAG 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 456
EcoICRI GAGCTC 2 cut(s) 789, 908
EcoRII CCWGG 3 cut(s) 233, 419, 664
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 2 cut(s) 791, 910
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 3 cut(s) 62, 109, 323
FatI CATG 3 cut(s) 58, 105, 319
Fnu4HI GCNGC 2 cut(s) 465, 578
FokI GGATG 6 cut(s) 215, 308, 483, 592, 771, 907
FriOI GRGCYC 2 cut(s) 791, 910
Fsp4HI GCNGC 2 cut(s) 465, 578
FspBI CTAG 3 cut(s) 414, 573, 955
GluI GCNGC 2 cut(s) 465, 578
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 2 cut(s) 256, 709
HaeIII GGCC 1 cut(s) 656
HapII CCGG 2 cut(s) 365, 923
Hin1II CATG 3 cut(s) 62, 109, 323
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 1 cut(s) 75
HpaII CCGG 2 cut(s) 365, 923
HphI GGTGA 4 cut(s) 127, 227, 562, 629
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 4 cut(s) 360, 590, 630, 793
Hpy188III TCNNGA 2 cut(s) 79, 414
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 2 cut(s) 56, 646
HpyCH4III ACNGT 4 cut(s) 225, 388, 550, 858
HpyCH4IV ACGT 2 cut(s) 596, 824
HpyCH4V TGCA 5 cut(s) 221, 370, 480, 771, 807
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 583, 768
HpyF3I CTNAG 3 cut(s) 54, 456, 790
HpySE526I ACGT 2 cut(s) 596, 824
Hsp92II CATG 3 cut(s) 62, 109, 323
KpnI GGTACC 2 cut(s) 335, 843
Kzo9I GATC 5 cut(s) 257, 403, 567, 619, 793
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 2 cut(s) 451, 589
LweI GCATC 4 cut(s) 193, 208, 621, 749
MaeI CTAG 3 cut(s) 414, 573, 955
MaeII ACGT 2 cut(s) 596, 824
MaeIII GTNAC 1 cut(s) 852
MalI GATC 5 cut(s) 259, 405, 569, 621, 795
MboI GATC 5 cut(s) 257, 403, 567, 619, 793
MboII GAAGA 2 cut(s) 525, 745
MhlI GDGCHC 5 cut(s) 168, 372, 588, 791, 910
MluCI AATT 6 cut(s) 208, 306, 325, 337, 772, 927
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 9 cut(s) 120, 354, 407, 465, 530, 619, 684, 731, 871
MseI TTAA 2 cut(s) 699, 885
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 2 cut(s) 365, 923
MspR9I CCNGG 3 cut(s) 235, 421, 666
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 3 cut(s) 235, 421, 666
MwoI GCNNNNNNNGC 3 cut(s) 110, 583, 768
NdeII GATC 5 cut(s) 257, 403, 567, 619, 793
NlaIII CATG 3 cut(s) 62, 109, 323
NlaIV GGNNCC 3 cut(s) 333, 524, 841
NspV TTCGAA 1 cut(s) 731
PaqCI CACCTGC 1 cut(s) 571
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 75
PfoI TCCNGGA 1 cut(s) 233
PinAI ACCGGT 1 cut(s) 364
PkrI GCNGC 2 cut(s) 466, 579
Psp124BI GAGCTC 2 cut(s) 791, 910
Psp6I CCWGG 3 cut(s) 233, 419, 664
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 3 cut(s) 233, 419, 664
PspN4I GGNNCC 3 cut(s) 333, 524, 841
PspPI GGNCC 1 cut(s) 522
RsaI GTAC 4 cut(s) 179, 277, 333, 841
RsaNI GTAC 4 cut(s) 178, 276, 332, 840
RseI CAYNNNNRTG 1 cut(s) 63
SacI GAGCTC 2 cut(s) 791, 910
SaqAI TTAA 2 cut(s) 699, 885
SatI GCNGC 2 cut(s) 465, 578
Sau3AI GATC 5 cut(s) 257, 403, 567, 619, 793
Sau96I GGNCC 1 cut(s) 522
ScrFI CCNGG 3 cut(s) 235, 421, 666
SduI GDGCHC 5 cut(s) 168, 372, 588, 791, 910
SfaNI GCATC 4 cut(s) 193, 208, 621, 749
SfuI TTCGAA 1 cut(s) 731
SinI GGWCC 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 159, 380
SmoI CTYRAG 2 cut(s) 159, 380
Sse9I AATT 6 cut(s) 208, 306, 325, 337, 772, 927
SsiI CCGC 1 cut(s) 695
SspMI CTAG 3 cut(s) 414, 573, 955
SstI GAGCTC 2 cut(s) 791, 910
StyD4I CCNGG 3 cut(s) 233, 419, 664
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 4 cut(s) 225, 388, 550, 858
TaiI ACGT 2 cut(s) 599, 827
TaqI TCGA 2 cut(s) 611, 731
TasI AATT 6 cut(s) 208, 306, 325, 337, 772, 927
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 699, 885
Tru9I TTAA 2 cut(s) 699, 885
TseI GCWGC 2 cut(s) 464, 577
TspDTI ATGAA 3 cut(s) 75, 428, 594
VneI GTGCAC 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 522
XapI RAATTY 1 cut(s) 927
XbaI TCTAGA 1 cut(s) 413
XspI CTAG 3 cut(s) 414, 573, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.