Rh1DG407700

Protein phosphatase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008626
Physical Location & Seq
Reverse (-)
62602127 .. 62604657
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG407700.1

Sequence Viewer

Length: 450 bp
ATGAGTAACCGAGGCCGAGTTAGATGGGATGAGGAGAATCTGGGAGAAATTGAAGCAAATAAACCTGTAAGGCAGAAGATTACTGAGCCAAAGACGCCGTATCACCCCATGCAAACTGATGATGAAGATGATGAGGGATCTCTGTCTCCTATACGGCGGAGTCGGTTTGATGAATGTATTGGTGACGCAGTGCATGCAGAAGCGATACGATCTGCTTTGAGTGATGTGGCATCATCAAGTACAAAGAAGACCTCGAGATCTACTGGCTGGACATCATCCGAGGATGAAGCTGATGCTATGGATCAAGATGGTGAAGGTGTTCGTTTATTCCTTTTTCAACCTTTCAACCTACTTAACTCTTTTGATCGTCATTCATTACAACTTTTCACTACATTTATTTGGAGTAACATGATTGTTTATTATACCTTAGCCAGCCTACTTGTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IPP-2

Protein Analysis

149

Amino Acids

16.99

Weight (kDa)

4.76

Isoelectric Point (pI)

62.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPP-2 PF04979 7 - 100 1.3e-13 Protein phosphatase inhibitor 2 (IPP-2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclWI GGATC 2 cut(s) 145, 309
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 3 cut(s) 53, 338, 346
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 2 cut(s) 145, 309
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 318
AsuHPI GGTGA 3 cut(s) 95, 194, 323
AvaI CYCGRG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 254
BccI CCATC 2 cut(s) 18, 302
BceAI ACGGC 2 cut(s) 82, 170
BcoDI GTCTC 1 cut(s) 150
BglII AGATCT 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 253
BmsI GCATC 2 cut(s) 239, 283
BpiI GAAGAC 1 cut(s) 254
Bpu10I CCTNAGC 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 10, 279
Bse1I ACTGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 10, 279
BseGI GGATG 3 cut(s) 34, 275, 289
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 47
BshFI GGCC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 253
Bsp143I GATC 5 cut(s) 137, 209, 257, 301, 364
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 76
BspPI GGATC 2 cut(s) 145, 309
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 10, 279
BssMI GATC 5 cut(s) 137, 209, 257, 301, 364
BssNI GRCGYC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 195, 433
BstDEI CTNAG 2 cut(s) 84, 427
BstF5I GGATG 3 cut(s) 34, 275, 289
BstKTI GATC 5 cut(s) 140, 212, 260, 304, 367
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 5 cut(s) 137, 209, 257, 301, 364
BstMWI GCNNNNNNNGC 2 cut(s) 94, 194
BstNSI RCATGY 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 137, 257
BstYI RGATCY 2 cut(s) 137, 257
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 3 cut(s) 34, 275, 289
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 195, 433
CseI GACGC 2 cut(s) 103, 194
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 109, 194, 409
CviJI RGCY 6 cut(s) 15, 88, 267, 290, 431, 435
CviKI_1 RGCY 6 cut(s) 15, 88, 267, 290, 431, 435
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 84, 427
DpnI GATC 5 cut(s) 139, 211, 259, 303, 366
DpnII GATC 5 cut(s) 137, 209, 257, 301, 364
EciI GGCGGA 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 253
FaeI CATG 3 cut(s) 112, 197, 412
FaiI YATR 6 cut(s) 110, 152, 195, 299, 410, 423
FatI CATG 3 cut(s) 108, 193, 408
FokI GGATG 3 cut(s) 41, 262, 296
HaeIII GGCC 1 cut(s) 15
HgaI GACGC 2 cut(s) 103, 194
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 3 cut(s) 112, 197, 412
HinfI GANTC 2 cut(s) 37, 160
HphI GGTGA 3 cut(s) 95, 194, 323
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 255, 305
HpyAV CCTTC 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 112, 193, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 194
HpyF3I CTNAG 2 cut(s) 84, 427
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 3 cut(s) 112, 197, 412
Kzo9I GATC 5 cut(s) 137, 209, 257, 301, 364
LpnPI CCDG 5 cut(s) 26, 78, 249, 253, 445
LweI GCATC 2 cut(s) 239, 283
MaeIII GTNAC 3 cut(s) 5, 182, 404
MalI GATC 5 cut(s) 139, 211, 259, 303, 366
MboI GATC 5 cut(s) 137, 209, 257, 301, 364
MboII GAAGA 3 cut(s) 88, 137, 259
MflI RGATCY 2 cut(s) 137, 257
MluCI AATT 1 cut(s) 48
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 5 cut(s) 5, 25, 127, 262, 274
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 94, 194
NdeII GATC 5 cut(s) 137, 209, 257, 301, 364
NlaIII CATG 3 cut(s) 112, 197, 412
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 37
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PsuI RGATCY 2 cut(s) 137, 257
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 5 cut(s) 137, 209, 257, 301, 364
SchI GAGTC 1 cut(s) 169
SetI ASST 7 cut(s) 67, 254, 292, 319, 343, 351, 428
SfaNI GCATC 2 cut(s) 239, 283
Sfr274I CTCGAG 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SphI GCATGC 1 cut(s) 197
Sse9I AATT 1 cut(s) 48
SsiI CCGC 1 cut(s) 157
TaqI TCGA 1 cut(s) 254
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 138, 186, 300, 363
TspRI CASTG 1 cut(s) 195
XceI RCATGY 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.