Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008626

Physical Location & Seq

Genomic Coordinates Reverse (-)

19190301 .. 19191735

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAATTCTTAGAAATTGGCAGAGGCCGAGTTAGATGGGACGAGGCTAATATTGGAGAAATTGAAGCAAATAAACCTGTAAGGCAGAAAATTACTGAGCCGAAGACGCCATACCACCCCATGATGACCGATGATGAGTATGGATCTCTGTCTCCTATGCGGGGGGGTACCTTCGATGATTGTGTTGGTGATGCAGATCATGCAGAAGCAATACGAACTGCTTTGAGTGATGTGGCATCATCAAGTGGAAAGAGCACCCAACGGTCTACTGGCTGGACATCATCCGAGGATGAGGCTGATGCTATGGAACAAGATGATGAAGATTCTGAGAAAAGCAAGAGTTTTAGGGAGCACAGAAGAGCCCATTATGATGAATTCCAGAAAGTAAAAGAACTCAGGCGGAAAGCTTCTTTGCTCGATGATGAAGAGGAGGACGAGGACGAGAACCTTGACACAGATAAGGAGAAGGAGAAGAAATCTGGTTCCTCTTCGTTAACTGCCGGTGTCAAAGAAATAGATATCGACAAAGATGGTACCTCATCAACCAAAAGCTCTTCCGGACCTCCGGCGAATGGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IPP-2

Protein Analysis

194

Amino Acids

21.4

Weight (kDa)

4.67

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52200 AT5G52200 AT5G52200
fragaria_vesca	FvH4_7g29250 FvH4_7g29250 FvH4_7g29250
malus_domestica	MD01G1199100.v1.1 MD07G1266900.v1.1
prunus_persica	Prupe.2G292500_v2.0.a1 Prupe.2G292500_v2.0.a1 Prupe.2G292500_v2.0.a1
pyrus_communis	pycom01g20900
rosa_chinensis	RchiOBHm_Chr1g0377001
rosa_laevigata	RLG00000026552
rosa_multiflora	Rmu_ssc0000155.1_g000030
rosa_roxburghii	Rroxscaffold_4G00281560
rosa_rugosa	Rorug01G0400500 Rorug01G0400600
rosa_samantha	Rh1AG417500 Rh1BG376900 Rh1CG390700 Rh1DG407700
rosa_wichuraiana	Rw1G036650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	167, 533
AccB1I	GGYRCC	2 cut(s)	167, 533
AccI	GTMKAC	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	557
AciI	CCGC	2 cut(s)	160, 400
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	5, 374
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	2 cut(s)	169, 535
AfiI	CCNNNNNNNGG	2 cut(s)	161, 572
AgsI	TTSAA	1 cut(s)	65
AluBI	AGCT	2 cut(s)	407, 552
AluI	AGCT	2 cut(s)	407, 552
Alw21I	GWGCWC	2 cut(s)	257, 354
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	557
AoxI	GGCC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	5, 374
Asp718I	GGTACC	2 cut(s)	167, 533
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	560
BanI	GGYRCC	2 cut(s)	167, 533
BanII	GRGCYC	1 cut(s)	364
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	257, 354
BccI	CCATC	2 cut(s)	30, 524
BcoDI	GTCTC	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	3 cut(s)	169, 484, 535
BmsI	GCATC	3 cut(s)	181, 245, 289
BpiI	GAAGAC	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 572
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	281, 295
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	161, 572
BseMII	CTCAG	3 cut(s)	87, 318, 409
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	2 cut(s)	167, 533
BsiHKAI	GWGCWC	2 cut(s)	257, 354
BsiSI	CCGG	3 cut(s)	501, 558, 566
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	161, 572
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	3 cut(s)	257, 354, 364
Bsp13I	TCCGGA	1 cut(s)	557
Bsp143I	GATC	2 cut(s)	143, 196
BspACI	CCGC	2 cut(s)	160, 400
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	3 cut(s)	88, 319, 408
BspEI	TCCGGA	1 cut(s)	557
BspLI	GGNNCC	3 cut(s)	169, 484, 535
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	2 cut(s)	352, 559
BspT107I	GGYRCC	2 cut(s)	167, 533
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	143, 196
BssNI	GRCGYC	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	4 cut(s)	352, 420, 493, 559
BstACI	GRCGYC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstDEI	CTNAG	5 cut(s)	10, 96, 327, 395, 579
BstF5I	GGATG	2 cut(s)	281, 295
BstH2I	RGCGCY	1 cut(s)	579
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	2 cut(s)	146, 199
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	143, 196
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 200, 575
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	281, 295
CfoI	GCGC	1 cut(s)	578
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	168, 534
CviAII	CATG	2 cut(s)	121, 200
CviJI	RGCY	8 cut(s)	27, 47, 100, 273, 296, 362, 407, 552
CviKI_1	RGCY	8 cut(s)	27, 47, 100, 273, 296, 362, 407, 552
CviQI	GTAC	2 cut(s)	168, 534
DdeI	CTNAG	5 cut(s)	10, 96, 327, 395, 579
DpnI	GATC	2 cut(s)	145, 198
DpnII	GATC	2 cut(s)	143, 196
Eam1104I	CTCTTC	4 cut(s)	352, 420, 493, 559
EarI	CTCTTC	4 cut(s)	352, 420, 493, 559
EciI	GGCGGA	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	374
EcoRV	GATATC	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	2 cut(s)	124, 203
FaiI	YATR	7 cut(s)	112, 122, 141, 158, 201, 305, 369
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	2 cut(s)	120, 199
FauI	CCCGC	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	266
FokI	GGATG	2 cut(s)	268, 302
FriOI	GRGCYC	1 cut(s)	364
GlaI	GCGC	1 cut(s)	577
HaeII	RGCGCY	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	3 cut(s)	501, 558, 566
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	578
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	124, 203
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	1 cut(s)	323
HpaI	GTTAAC	1 cut(s)	495
HpaII	CCGG	3 cut(s)	501, 558, 566
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	267, 495
Hpy188I	TCNGA	2 cut(s)	286, 328
Hpy188III	TCNNGA	2 cut(s)	379, 558
Hpy8I	GTNNAC	2 cut(s)	267, 495
HpyAV	CCTTC	2 cut(s)	181, 460
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	194, 203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 200, 575
HpyF3I	CTNAG	5 cut(s)	10, 96, 327, 395, 579
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	124, 203
HspAI	GCGC	1 cut(s)	576
Kpn2I	TCCGGA	1 cut(s)	557
KpnI	GGTACC	2 cut(s)	171, 537
KspAI	GTTAAC	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	143, 196
LguI	GCTCTTC	2 cut(s)	352, 559
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	8 cut(s)	90, 255, 259, 382, 392, 465, 514, 571
LweI	GCATC	3 cut(s)	181, 245, 289
MalI	GATC	2 cut(s)	145, 198
MboI	GATC	2 cut(s)	143, 196
MboII	GAAGA	7 cut(s)	115, 332, 369, 437, 480, 484, 546
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	3 cut(s)	257, 354, 364
MluCI	AATT	5 cut(s)	5, 15, 60, 90, 374
MroI	TCCGGA	1 cut(s)	557
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	3 cut(s)	501, 558, 566
MwoI	GCNNNNNNNGC	3 cut(s)	106, 200, 575
NdeII	GATC	2 cut(s)	143, 196
NlaIII	CATG	2 cut(s)	124, 203
NlaIV	GGNNCC	3 cut(s)	169, 484, 535
NmeAIII	GCCGAG	1 cut(s)	53
PciSI	GCTCTTC	2 cut(s)	352, 559
PfeI	GAWTC	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	169, 484, 535
PspPI	GGNCC	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	2 cut(s)	169, 535
RsaNI	GTAC	2 cut(s)	168, 534
RseI	CAYNNNNRTG	1 cut(s)	369
SapI	GCTCTTC	2 cut(s)	352, 559
SaqAI	TTAA	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	143, 196
Sau96I	GGNCC	1 cut(s)	560
SduI	GDGCHC	3 cut(s)	257, 354, 364
SetI	ASST	7 cut(s)	79, 173, 409, 450, 539, 554, 565
SfaNI	GCATC	3 cut(s)	181, 245, 289
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	369
Sse9I	AATT	5 cut(s)	5, 15, 60, 90, 374
SsiI	CCGC	2 cut(s)	160, 400
SspI	AATATT	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	174, 417, 522
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	5 cut(s)	5, 15, 60, 90, 374
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TspDTI	ATGAA	4 cut(s)	17, 333, 387, 438
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	2 cut(s)	5, 374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.