Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003225

Physical Location & Seq

Genomic Coordinates Reverse (-)

21482140 .. 21483797

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATCAACCCGACCCGAAAAATGGCTCTGGTCTGATTCTCTCCGCCACTGAACCGCTGCGATCGTTTCTCGCTCTCGCCTCCGGTGATCGTCGTCTCTCCGACGAGCTCAGAGGAATTGCTTCCGATCTTCGCTCGAAGAACACCATTCCGTACAAATTGCTCCGCGCTATATGGACCGGATCCGATCCGTCGACCAGACCGGATTTGTTGGGACTTTTCTCCGGCTCCAATTTCGTCTTCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACTGAAACTGAGATTAGTGAAGCTCAGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGTTAAAGATATAACACCAAAGAAACAAGTCGAAGAGCCTTTCTCTTCTTACAAAGACCAGCTCGGTTTTGGTTTACATGTTGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTCCTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACTAGTTCTGGCGATGCTTGTGGAAACGCTTCTATTTATAATCAAAACGTCTAAAGATGATCAGATTCAGAGCTCTAAATCGTTCACTCAGAGCTCTCCATCGTTCACTCAGAGCTCTCCATCGTTCACTCCCACTACTAAGAAAAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vma12

Protein Analysis

222

Amino Acids

24.52

Weight (kDa)

9.57

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52980 AT5G52980
fragaria_vesca	FvH4_5g22440 FvH4_5g22440
malus_domestica	MD06G1036800.v1.1
prunus_persica	Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1
pyrus_communis	pycom06g03010
rosa_chinensis	RchiOBHm_Chr7g0210201 RchiOBHm_Chr7g0210231
rosa_laevigata	RLG00000003057
rosa_multiflora	Rmu_sc0005438.1_g000010 Rmu_sc0006908.1_g000007 Rmu_sc0019437.1_g000003
rosa_roxburghii	Rroxscaffold_3G00248540
rosa_rugosa	Rorug07G0119300 Rorug07G0119400 Rorug07G0119500 Rorug07G0119600 Rorug07G0119700 Rorug07G0119800
rosa_samantha	Rh1AG349500 Rh7AG252700 Rh7BG247800 Rh7CG269700 Rh7DG260300
rosa_wichuraiana	Rw1G031130 Rw7G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	1 cut(s)	168
AciI	CCGC	5 cut(s)	45, 56, 166, 478, 486
AclWI	GGATC	4 cut(s)	12, 177, 182, 190
AcuI	CTGAAG	1 cut(s)	445
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	475
AhlI	ACTAGT	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	8 cut(s)	109, 298, 334, 397, 467, 588, 609, 630
AluI	AGCT	8 cut(s)	109, 298, 334, 397, 467, 588, 609, 630
Alw21I	GWGCWC	4 cut(s)	111, 590, 611, 632
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	4 cut(s)	12, 177, 182, 190
ApeKI	GCWGC	2 cut(s)	58, 497
Asp700I	GAANNNNTTC	2 cut(s)	121, 543
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	98, 235
AvaII	GGWCC	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	182
BanII	GRGCYC	4 cut(s)	111, 590, 611, 632
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	4 cut(s)	111, 590, 611, 632
BbvI	GCAGC	2 cut(s)	45, 484
BccI	CCATC	2 cut(s)	622, 643
BciVI	GTATCC	1 cut(s)	443
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	443
BisI	GCNGC	2 cut(s)	59, 498
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	2 cut(s)	60, 499
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	184, 229
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	232
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
Bpu1102I	GCTNAGC	1 cut(s)	330
BsaWI	WCCGGW	3 cut(s)	83, 179, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	246, 439
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	7 cut(s)	124, 275, 313, 321, 482, 617, 638
BseNI	ACTGG	2 cut(s)	246, 439
BseXI	GCAGC	2 cut(s)	45, 484
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	4 cut(s)	111, 590, 611, 632
BsiSI	CCGG	4 cut(s)	84, 180, 203, 225
BslFI	GGGAC	2 cut(s)	228, 234
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	228, 234
Bsp1286I	GDGCHC	4 cut(s)	111, 590, 611, 632
Bsp143I	GATC	7 cut(s)	4, 62, 88, 127, 182, 187, 574
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	5 cut(s)	45, 56, 166, 478, 486
BspCNI	CTCAG	7 cut(s)	123, 276, 312, 322, 483, 616, 637
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	184, 229
BspPI	GGATC	4 cut(s)	12, 177, 182, 190
BspQI	GCTCTTC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	246, 439
BssMI	GATC	7 cut(s)	4, 62, 88, 127, 182, 187, 574
Bst6I	CTCTTC	2 cut(s)	363, 385
BstDEI	CTNAG	8 cut(s)	110, 284, 299, 330, 491, 603, 624, 654
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	7 cut(s)	7, 65, 91, 130, 185, 190, 577
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	7 cut(s)	4, 62, 88, 127, 182, 187, 574
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	416
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	45, 484
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	443
BtgZI	GCGATG	1 cut(s)	542
BtsIMutI	CAGTG	2 cut(s)	48, 432
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	413, 427
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	8 cut(s)	110, 284, 299, 330, 491, 603, 624, 654
DpnI	GATC	7 cut(s)	6, 64, 90, 129, 184, 189, 576
DpnII	GATC	7 cut(s)	4, 62, 88, 127, 182, 187, 574
Eam1104I	CTCTTC	2 cut(s)	363, 385
EarI	CTCTTC	2 cut(s)	363, 385
EciI	GGCGGA	1 cut(s)	34
Ecl136II	GAGCTC	4 cut(s)	109, 588, 609, 630
Eco24I	GRGCYC	4 cut(s)	111, 590, 611, 632
Eco47I	GGWCC	1 cut(s)	177
Eco53kI	GAGCTC	4 cut(s)	109, 588, 609, 630
Eco57I	CTGAAG	1 cut(s)	445
EcoICRI	GAGCTC	4 cut(s)	109, 588, 609, 630
EcoT38I	GRGCYC	4 cut(s)	111, 590, 611, 632
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	416, 430
FaiI	YATR	7 cut(s)	173, 175, 327, 347, 414, 428, 554
FaqI	GGGAC	2 cut(s)	228, 234
FatI	CATG	2 cut(s)	412, 426
FauI	CCCGC	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	59, 498
FriOI	GRGCYC	4 cut(s)	111, 590, 611, 632
Fsp4HI	GCNGC	2 cut(s)	59, 498
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	59, 498
HapII	CCGG	4 cut(s)	84, 180, 203, 225
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	416, 430
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	3 cut(s)	37, 508, 580
HpaII	CCGG	4 cut(s)	84, 180, 203, 225
HphI	GGTGA	2 cut(s)	98, 235
Hpy166II	GTNNAC	6 cut(s)	195, 410, 432, 600, 621, 642
Hpy8I	GTNNAC	6 cut(s)	195, 410, 432, 600, 621, 642
Hpy99I	CGWCG	3 cut(s)	96, 107, 196
HpyAV	CCTTC	2 cut(s)	313, 469
HpyCH4IV	ACGT	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	8 cut(s)	110, 284, 299, 330, 491, 603, 624, 654
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	2 cut(s)	416, 430
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	7 cut(s)	4, 62, 88, 127, 182, 187, 574
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	168, 233
Lsp1109I	GCAGC	2 cut(s)	45, 484
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	563
MalI	GATC	7 cut(s)	6, 64, 90, 129, 184, 189, 576
MbiI	CCGCTC	1 cut(s)	488
MboI	GATC	7 cut(s)	4, 62, 88, 127, 182, 187, 574
MboII	GAAGA	6 cut(s)	122, 151, 232, 284, 372, 380
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	4 cut(s)	111, 590, 611, 632
MluCI	AATT	3 cut(s)	117, 158, 232
MmeI	TCCRAC	2 cut(s)	126, 427
MnlI	CCTC	3 cut(s)	91, 107, 309
MroXI	GAANNNNTTC	2 cut(s)	121, 543
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	4 cut(s)	84, 180, 203, 225
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	494
NdeII	GATC	7 cut(s)	4, 62, 88, 127, 182, 187, 574
NlaIII	CATG	2 cut(s)	416, 430
NlaIV	GGNNCC	2 cut(s)	184, 229
NspI	RCATGY	1 cut(s)	416
PciI	ACATGT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	363
PdmI	GAANNNNTTC	2 cut(s)	121, 543
PfeI	GAWTC	3 cut(s)	37, 508, 580
PkrI	GCNGC	2 cut(s)	60, 499
Ple19I	CGATCG	1 cut(s)	65
PscI	ACATGT	1 cut(s)	412
PsiI	TTATAA	1 cut(s)	554
Psp124BI	GAGCTC	4 cut(s)	111, 590, 611, 632
PspN4I	GGNNCC	2 cut(s)	184, 229
PspPI	GGNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	182
PvuI	CGATCG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	4 cut(s)	111, 590, 611, 632
SalI	GTCGAC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	59, 498
Sau3AI	GATC	7 cut(s)	4, 62, 88, 127, 182, 187, 574
Sau96I	GGNCC	1 cut(s)	177
SduI	GDGCHC	4 cut(s)	111, 590, 611, 632
SetI	ASST	9 cut(s)	111, 300, 336, 399, 469, 566, 590, 611, 632
SfaNI	GCATC	1 cut(s)	519
SinI	GGWCC	1 cut(s)	177
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	3 cut(s)	117, 158, 232
SsiI	CCGC	5 cut(s)	45, 56, 166, 478, 486
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	4 cut(s)	111, 590, 611, 632
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	3 cut(s)	137, 194, 366
TasI	AATT	3 cut(s)	117, 158, 232
TfiI	GAWTC	3 cut(s)	37, 508, 580
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	55, 439
TseI	GCWGC	2 cut(s)	58, 497
TspGWI	ACGGA	2 cut(s)	141, 180
TspRI	CASTG	2 cut(s)	55, 439
VpaK11BI	GGWCC	1 cut(s)	177
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	194
XmnI	GAANNNNTTC	2 cut(s)	121, 543
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.