Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003225

Physical Location & Seq

Genomic Coordinates Forward (+)

22156204 .. 22160348

Gene Structure 4145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG247800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTACTGTTCTTTAAGTTTTATTTTTCCTTCGTTATATGACCAGGTCCCAACTTCTGTTAAACACACTCCAACCTTTGATCGATTTCTCTCTCGAACCATCTTTCCCGGAGACCCCAAAAAACGCGCGAAAATGAGCGGAGACTCTCCGGCACCGGCAACTGGACCCGGACTGGTGATATCGACCACGGCACCCATCCTCTCCTTCCTCGTCTCCGCCTCCACCGACCCACACCTCTCCAAGGACCTCCAGCAAACCGCCTCCAAGCTCTCCTCCAAATCCAATGTCCCCTACCGGGCCATCCGCGCCCTCTGGGTCGCTTCCCGGGCCTCCACCCGGCCCCAATTGGTCAAGCTCTTCTCCGGCTCCGGGTTCGTCTTCACCAGCCCCAAGCCCAGAGAGAAGAGTGAGGAGCTGAAGGCGAGGCTGAAGAAGCTGGAGGAGATATCAGAGAGGAATGCATATGCAGAGCTTGTGAAGGATATAACGCCTCGGAAAGATAGCGCACCGGAGCCGTTCTCTTCTTACAAGGATCAATTGGGCTTTGGTATGCCTAACTCATGCATCATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vma12

Protein Analysis

191

Amino Acids

21.02

Weight (kDa)

9.72

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52980 AT5G52980
fragaria_vesca	FvH4_5g22440 FvH4_5g22440
malus_domestica	MD06G1036800.v1.1
prunus_persica	Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1
pyrus_communis	pycom06g03010
rosa_chinensis	RchiOBHm_Chr7g0210201 RchiOBHm_Chr7g0210231
rosa_laevigata	RLG00000003057
rosa_multiflora	Rmu_sc0005438.1_g000010 Rmu_sc0006908.1_g000007 Rmu_sc0019437.1_g000003
rosa_roxburghii	Rroxscaffold_3G00248540
rosa_rugosa	Rorug07G0119300 Rorug07G0119400 Rorug07G0119500 Rorug07G0119600 Rorug07G0119700 Rorug07G0119800
rosa_samantha	Rh1AG349500 Rh7AG252700 Rh7BG247800 Rh7CG269700 Rh7DG260300
rosa_wichuraiana	Rw1G031130 Rw7G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	151, 190
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	3 cut(s)	126, 128, 306
AciI	CCGC	4 cut(s)	138, 216, 258, 304
AclWI	GGATC	1 cut(s)	540
AcuI	CTGAAG	2 cut(s)	437, 449
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	5 cut(s)	161, 241, 295, 336, 369
AjnI	CCWGG	1 cut(s)	42
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
AluBI	AGCT	5 cut(s)	268, 355, 415, 436, 472
AluI	AGCT	5 cut(s)	268, 355, 415, 436, 472
Alw26I	GTCTC	3 cut(s)	105, 135, 217
AlwI	GGATC	1 cut(s)	540
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	3 cut(s)	297, 327, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspLEI	GCGC	3 cut(s)	128, 308, 506
AspS9I	GGNCC	6 cut(s)	46, 164, 244, 297, 327, 339
AsuC2I	CCSGG	7 cut(s)	108, 168, 296, 325, 326, 337, 370
AsuHPI	GGTGA	2 cut(s)	187, 373
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	3 cut(s)	46, 164, 244
BanI	GGYRCC	2 cut(s)	151, 190
BbsI	GAAGAC	1 cut(s)	370
BccI	CCATC	3 cut(s)	107, 203, 308
BceAI	ACGGC	2 cut(s)	204, 499
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	7 cut(s)	108, 168, 296, 325, 326, 337, 370
BcoDI	GTCTC	3 cut(s)	105, 135, 217
Bme1390I	CCNGG	8 cut(s)	44, 108, 168, 296, 325, 326, 337, 370
Bme18I	GGWCC	3 cut(s)	46, 164, 244
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	6 cut(s)	46, 164, 244, 297, 327, 339
BmiI	GGNNCC	7 cut(s)	48, 153, 166, 192, 341, 367, 513
BmrFI	CCNGG	8 cut(s)	44, 108, 168, 296, 325, 326, 337, 370
BpiI	GAAGAC	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	2 cut(s)	233, 458
BpuMI	CCSGG	7 cut(s)	108, 168, 296, 325, 326, 337, 370
Bsa29I	ATCGAT	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	186, 240, 324, 491
BsaWI	WCCGGW	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 241, 295, 336, 369
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	166, 177
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	4 cut(s)	186, 240, 324, 491
BseGI	GGATG	2 cut(s)	195, 300
BseLI	CCNNNNNNNGG	5 cut(s)	161, 241, 295, 336, 369
BseNI	ACTGG	2 cut(s)	166, 177
BseRI	GAGGAG	3 cut(s)	262, 425, 455
Bsh1236I	CGCG	3 cut(s)	126, 128, 306
BshFI	GGCC	3 cut(s)	299, 329, 340
BshNI	GGYRCC	2 cut(s)	151, 190
BshVI	ATCGAT	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	32, 272
BslI	CCNNNNNNNGG	5 cut(s)	161, 241, 295, 336, 369
BsmAI	GTCTC	3 cut(s)	105, 135, 217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	32, 272
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	299, 329, 340
Bso31I	GGTCTC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	79, 532
BspACI	CCGC	4 cut(s)	138, 216, 258, 304
BspANI	GGCC	3 cut(s)	299, 329, 340
BspDI	ATCGAT	1 cut(s)	82
BspFNI	CGCG	3 cut(s)	126, 128, 306
BspLI	GGNNCC	7 cut(s)	48, 153, 166, 192, 341, 367, 513
BspPI	GGATC	1 cut(s)	540
BspQI	GCTCTTC	1 cut(s)	362
BspT107I	GGYRCC	2 cut(s)	151, 190
BspTNI	GGTCTC	1 cut(s)	105
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	166, 177
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	4 cut(s)	186, 240, 324, 491
BssMI	GATC	2 cut(s)	79, 532
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	3 cut(s)	362, 398, 526
BstDSI	CCRYGG	1 cut(s)	186
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	195, 300
BstFNI	CGCG	3 cut(s)	126, 128, 306
BstHHI	GCGC	3 cut(s)	128, 308, 506
BstKTI	GATC	2 cut(s)	82, 535
BstMAI	GTCTC	3 cut(s)	105, 135, 217
BstMBI	GATC	2 cut(s)	79, 532
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 326, 433
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	8 cut(s)	42, 106, 166, 294, 323, 324, 335, 368
BstUI	CGCG	3 cut(s)	126, 128, 306
BstV2I	GAAGAC	1 cut(s)	370
Bsu15I	ATCGAT	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	299, 329, 340
BsuTUI	ATCGAT	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	195, 300
CfoI	GCGC	3 cut(s)	128, 308, 506
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	6 cut(s)	46, 164, 244, 297, 327, 339
Cfr9I	CCCGGG	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	561
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	2 cut(s)	81, 534
DpnII	GATC	2 cut(s)	79, 532
Eam1104I	CTCTTC	3 cut(s)	362, 398, 526
EarI	CTCTTC	3 cut(s)	362, 398, 526
EciI	GGCGGA	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	105
Eco32I	GATATC	2 cut(s)	180, 447
Eco47I	GGWCC	3 cut(s)	46, 164, 244
Eco57I	CTGAAG	2 cut(s)	437, 449
Eco88I	CYCGRG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	2 cut(s)	46, 244
EcoRII	CCWGG	1 cut(s)	42
EcoRV	GATATC	2 cut(s)	180, 447
EcoT14I	CCWWGG	1 cut(s)	240
EcoT22I	ATGCAT	2 cut(s)	463, 566
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	1 cut(s)	564
FaiI	YATR	8 cut(s)	37, 39, 463, 465, 485, 551, 562, 569
FaqI	GGGAC	2 cut(s)	32, 272
FatI	CATG	1 cut(s)	560
FauNDI	CATATG	1 cut(s)	463
FokI	GGATG	2 cut(s)	182, 287
GlaI	GCGC	3 cut(s)	127, 307, 505
GsuI	CTGGAG	2 cut(s)	233, 458
HaeIII	GGCC	3 cut(s)	299, 329, 340
HhaI	GCGC	3 cut(s)	128, 308, 506
Hin1II	CATG	1 cut(s)	564
Hin6I	GCGC	3 cut(s)	126, 306, 504
HinP1I	GCGC	3 cut(s)	126, 306, 504
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	2 cut(s)	187, 373
Hpy188I	TCNGA	2 cut(s)	451, 495
Hpy188III	TCNNGA	2 cut(s)	93, 573
HpyAV	CCTTC	4 cut(s)	39, 214, 412, 472
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	461, 467, 564
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 326, 433
Hsp92II	CATG	1 cut(s)	564
HspAI	GCGC	3 cut(s)	126, 306, 504
Kzo9I	GATC	2 cut(s)	79, 532
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	3 cut(s)	371, 412, 511
MabI	ACCWGGT	1 cut(s)	42
MalI	GATC	2 cut(s)	81, 534
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	79, 532
MboII	GAAGA	5 cut(s)	349, 370, 415, 442, 513
MfeI	CAATTG	2 cut(s)	344, 536
MluCI	AATT	2 cut(s)	344, 536
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	95
Mph1103I	ATGCAT	2 cut(s)	463, 566
MseI	TTAA	2 cut(s)	14, 60
MspR9I	CCNGG	8 cut(s)	44, 108, 168, 296, 325, 326, 337, 370
MunI	CAATTG	2 cut(s)	344, 536
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	3 cut(s)	126, 128, 306
MwoI	GCNNNNNNNGC	3 cut(s)	305, 326, 433
NciI	CCSGG	7 cut(s)	108, 168, 296, 325, 326, 337, 370
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	79, 532
NlaIII	CATG	1 cut(s)	564
NlaIV	GGNNCC	7 cut(s)	48, 153, 166, 192, 341, 367, 513
NsiI	ATGCAT	2 cut(s)	463, 566
PciSI	GCTCTTC	1 cut(s)	362
PctI	GAATGC	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	106
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	2 cut(s)	46, 244
Psp5II	RGGWCCY	2 cut(s)	46, 244
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	7 cut(s)	48, 153, 166, 192, 341, 367, 513
PspPI	GGNCC	6 cut(s)	46, 164, 244, 297, 327, 339
PspPPI	RGGWCCY	2 cut(s)	46, 244
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	14, 60
Sau3AI	GATC	2 cut(s)	79, 532
Sau96I	GGNCC	6 cut(s)	46, 164, 244, 297, 327, 339
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	8 cut(s)	44, 108, 168, 296, 325, 326, 337, 370
SetI	ASST	9 cut(s)	48, 77, 237, 249, 270, 357, 417, 438, 474
SexAI	ACCWGGT	1 cut(s)	42
SinI	GGWCC	3 cut(s)	46, 164, 244
SmaI	CCCGGG	1 cut(s)	326
Sse9I	AATT	2 cut(s)	344, 536
SsiI	CCGC	4 cut(s)	138, 216, 258, 304
StyD4I	CCNGG	8 cut(s)	42, 106, 166, 294, 323, 324, 335, 368
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	82, 94, 182
TasI	AATT	2 cut(s)	344, 536
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	2 cut(s)	14, 60
Tru9I	TTAA	2 cut(s)	14, 60
TspMI	CCCGGG	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	3 cut(s)	46, 164, 244
XagI	CCTNNNNNAGG	1 cut(s)	239
XmaI	CCCGGG	1 cut(s)	324
Zsp2I	ATGCAT	2 cut(s)	463, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.